Wall clock time and date at job start Tue Mar 31 2020 12:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86795 * 119.99865 * 2 1 4 4 H 1.48499 * 109.47012 * 274.97656 * 3 2 1 5 5 H 1.48497 * 109.47255 * 34.97637 * 3 2 1 6 6 H 1.48503 * 109.47291 * 154.97686 * 3 2 1 7 7 C 1.38813 * 119.99973 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99628 * 172.62863 * 7 2 1 9 9 N 1.36936 * 120.00040 * 352.89846 * 7 2 1 10 10 C 1.47018 * 125.64720 * 4.98916 * 9 7 2 11 11 C 1.54325 * 107.27005 * 181.02523 * 10 9 7 12 12 C 1.55148 * 102.94325 * 22.18925 * 11 10 9 13 13 H 1.08998 * 111.00674 * 82.57821 * 12 11 10 14 14 C 1.53005 * 111.00665 * 206.42725 * 12 11 10 15 15 H 1.08995 * 109.49581 * 59.93763 * 14 12 11 16 16 C 1.53041 * 109.49407 * 299.84017 * 14 12 11 17 17 C 1.53040 * 109.53692 * 178.68303 * 16 14 12 18 18 C 1.53200 * 109.31292 * 61.36574 * 17 16 14 19 19 N 1.46930 * 108.77209 * 305.36573 * 18 17 16 20 20 C 1.34779 * 120.62930 * 233.58660 * 19 18 17 21 21 O 1.21501 * 120.00139 * 173.56663 * 20 19 18 22 22 C 1.48280 * 119.99802 * 353.56616 * 20 19 18 23 23 C 1.47494 * 128.70944 * 173.50022 * 22 20 19 24 24 N 1.30647 * 102.71574 * 179.97438 * 23 22 20 25 25 O 1.20832 * 109.61951 * 0.02562 * 24 23 22 26 26 N 1.20901 * 115.90915 * 359.68656 * 25 24 23 27 27 C 1.46921 * 118.74168 * 53.61180 * 19 18 17 28 28 C 1.47419 * 125.64660 * 184.68084 * 9 7 2 29 29 H 0.96999 * 120.00140 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.88357 * 300.43522 * 10 9 7 31 31 H 1.08996 * 109.88795 * 61.45267 * 10 9 7 32 32 H 1.08999 * 110.72449 * 140.55703 * 11 10 9 33 33 H 1.09007 * 110.71887 * 263.65061 * 11 10 9 34 34 H 1.09002 * 109.46044 * 298.69531 * 16 14 12 35 35 H 1.08994 * 109.46484 * 58.66267 * 16 14 12 36 36 H 1.09000 * 109.49941 * 301.41580 * 17 16 14 37 37 H 1.08991 * 109.52717 * 181.33086 * 17 16 14 38 38 H 1.09005 * 109.58281 * 185.58046 * 18 17 16 39 39 H 1.08997 * 109.70424 * 65.21963 * 18 17 16 40 40 H 1.07999 * 128.64145 * 0.02811 * 23 22 20 41 41 H 1.08997 * 109.58629 * 186.60614 * 27 19 18 42 42 H 1.08995 * 109.59095 * 66.17034 * 27 19 18 43 43 H 1.09006 * 110.37024 * 274.74724 * 28 9 7 44 44 H 1.09008 * 110.37076 * 37.07107 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3925 2.1071 -1.3948 5 1 1.5042 2.6200 0.8026 6 1 3.5964 1.4121 0.5922 7 6 2.0103 -1.2022 0.0005 8 1 3.0836 -1.2060 -0.1195 9 7 1.3335 -2.3835 0.1477 10 6 -0.1279 -2.5317 0.2099 11 6 -0.4282 -4.0327 0.4056 12 6 0.8938 -4.5758 1.0092 13 1 0.9329 -4.4017 2.0845 14 6 1.0731 -6.0613 0.6896 15 1 1.0986 -6.2004 -0.3911 16 6 -0.0943 -6.8553 1.2802 17 6 0.0669 -8.3371 0.9330 18 6 1.3686 -8.8625 1.5467 19 7 2.4799 -8.0130 1.0972 20 6 3.5650 -8.5555 0.5100 21 8 4.4234 -7.8368 0.0378 22 6 3.7112 -10.0294 0.4402 23 6 4.7378 -10.8223 -0.2618 24 7 4.3884 -12.0513 0.0111 25 8 3.3988 -12.0473 0.7044 26 7 2.9608 -10.9581 0.9937 27 6 2.3862 -6.5609 1.3005 28 6 1.9494 -3.7178 0.2635 29 1 -0.4850 0.8400 -0.0004 30 1 -0.5228 -1.9620 1.0511 31 1 -0.5762 -2.1796 -0.7191 32 1 -1.2559 -4.1730 1.1009 33 1 -0.6440 -4.5106 -0.5500 34 1 -0.1040 -6.7353 2.3635 35 1 -1.0319 -6.4852 0.8656 36 1 0.1017 -8.4553 -0.1500 37 1 -0.7768 -8.8990 1.3335 38 1 1.5381 -9.8888 1.2206 39 1 1.3012 -8.8310 2.6341 40 1 5.5714 -10.4737 -0.8534 41 1 3.2270 -6.0686 0.8121 42 1 2.4001 -6.3397 2.3677 43 1 2.1477 -4.1313 -0.7255 44 1 2.8705 -3.6615 0.8437 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961261911.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:11 Heat of formation + Delta-G solvation = 94.822286 kcal Electronic energy + Delta-G solvation = -27296.128774 eV Core-core repulsion = 23447.043124 eV Total energy + Delta-G solvation = -3849.085650 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -47.99718 -41.50167 -39.73711 -38.13267 -36.08335 -35.61638 -35.03354 -33.62895 -32.52876 -30.88905 -28.81481 -27.92001 -26.40466 -25.97293 -24.84183 -23.96675 -22.42890 -21.70809 -20.98697 -20.69667 -20.12506 -19.19829 -18.87774 -18.45790 -17.28666 -16.92981 -16.63109 -16.11736 -15.89679 -15.62571 -15.51206 -15.24902 -14.77439 -14.33260 -14.16327 -14.04551 -13.84316 -13.81082 -13.63470 -13.44712 -13.04388 -12.75666 -12.71385 -12.46837 -12.24676 -12.14464 -12.04315 -11.88559 -11.82755 -11.80028 -11.72534 -11.63894 -11.37588 -11.20583 -11.03001 -10.68307 -9.83115 -8.89108 -7.86968 -5.20827 -0.41730 0.29206 1.36736 1.44218 1.45733 1.55595 1.70791 2.26373 2.43816 2.48841 2.78742 3.30449 3.38004 3.60981 3.65592 3.68395 3.84092 3.93458 4.04309 4.18271 4.24766 4.29120 4.42215 4.42359 4.54377 4.62259 4.68620 4.76323 4.85409 4.87357 4.92455 4.96377 5.10509 5.11114 5.15323 5.31906 5.37758 5.42210 5.46452 5.54876 5.69730 5.79295 6.06232 6.20576 6.68662 7.10604 7.33607 7.78577 8.43360 9.23952 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.025522 B = 0.002714 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.825774 B =10314.269864 C =11211.805254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.066 4.066 3 Si 0.977 3.023 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.269 1.269 7 C -0.245 4.245 8 H 0.078 0.922 9 N -0.630 5.630 10 C 0.181 3.819 11 C -0.118 4.118 12 C -0.075 4.075 13 H 0.082 0.918 14 C -0.075 4.075 15 H 0.062 0.938 16 C -0.113 4.113 17 C -0.126 4.126 18 C 0.085 3.915 19 N -0.588 5.588 20 C 0.597 3.403 21 O -0.549 6.549 22 C -0.047 4.047 23 C 0.049 3.951 24 N -0.358 5.358 25 O 0.343 5.657 26 N -0.314 5.314 27 C 0.119 3.881 28 C 0.135 3.865 29 H 0.247 0.753 30 H 0.012 0.988 31 H -0.002 1.002 32 H 0.085 0.915 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.058 0.942 37 H 0.104 0.896 38 H 0.112 0.888 39 H 0.091 0.909 40 H 0.251 0.749 41 H 0.076 0.924 42 H 0.090 0.910 43 H 0.013 0.987 44 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.075 -26.346 4.349 26.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.259 4.259 3 Si 0.805 3.195 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.193 1.193 7 C -0.374 4.374 8 H 0.096 0.904 9 N -0.356 5.356 10 C 0.056 3.944 11 C -0.156 4.156 12 C -0.095 4.095 13 H 0.101 0.899 14 C -0.094 4.094 15 H 0.081 0.919 16 C -0.150 4.150 17 C -0.164 4.164 18 C -0.037 4.037 19 N -0.319 5.319 20 C 0.382 3.618 21 O -0.425 6.425 22 C -0.211 4.211 23 C -0.137 4.137 24 N -0.082 5.082 25 O 0.118 5.882 26 N -0.035 5.035 27 C -0.003 4.003 28 C 0.010 3.990 29 H 0.056 0.944 30 H 0.030 0.970 31 H 0.017 0.983 32 H 0.104 0.896 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.076 0.924 37 H 0.122 0.878 38 H 0.129 0.871 39 H 0.109 0.891 40 H 0.267 0.733 41 H 0.094 0.906 42 H 0.108 0.892 43 H 0.030 0.970 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 1.954 -26.722 4.516 27.172 hybrid contribution 0.808 2.339 -0.694 2.570 sum 2.762 -24.384 3.822 24.836 Atomic orbital electron populations 1.70207 1.06294 1.25264 1.58132 1.25662 0.96623 1.01006 1.02610 0.85089 0.77869 0.79257 0.77307 1.21473 1.21738 1.19336 1.19451 0.91578 0.84155 1.42206 0.90401 1.44844 1.02745 1.02120 1.85906 1.20952 0.83634 0.92619 0.97209 1.22717 0.97471 0.94681 1.00726 1.22210 0.94735 0.92876 0.99665 0.89930 1.21324 0.95045 0.92933 1.00128 0.91946 1.21599 0.97478 0.94174 1.01757 1.21895 0.97271 0.96225 1.01041 1.22562 0.84997 0.95195 1.00900 1.48078 1.17824 1.08687 1.57344 1.16838 0.82528 0.83783 0.78635 1.90852 1.42848 1.60963 1.47854 1.26048 0.96384 0.96441 1.02260 1.28164 1.00932 0.85063 0.99509 1.75112 1.01314 1.22594 1.09144 1.85097 1.30280 1.25878 1.46975 1.75301 1.19323 0.92359 1.16537 1.21791 0.98785 0.77870 1.01851 1.21818 0.95649 0.85106 0.96454 0.94385 0.96965 0.98339 0.89620 0.91569 0.90304 0.90655 0.92361 0.87772 0.87082 0.89086 0.73282 0.90568 0.89217 0.96964 0.94392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.47 10.36 21.65 0.22 -58.25 16 2 C -0.07 -3.87 5.48 84.86 0.46 -3.41 16 3 Si 0.98 46.88 29.56 68.60 2.03 48.91 16 4 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 5 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 6 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 7 C -0.24 -14.25 10.26 84.03 0.86 -13.39 16 8 H 0.08 4.38 7.84 -2.91 -0.02 4.35 16 9 N -0.63 -33.44 3.39 -691.56 -2.35 -35.78 16 10 C 0.18 9.07 5.38 86.73 0.47 9.53 16 11 C -0.12 -4.10 5.28 31.78 0.17 -3.93 16 12 C -0.08 -2.36 2.58 -9.33 -0.02 -2.38 16 13 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 14 C -0.07 -1.77 1.86 -10.71 -0.02 -1.79 16 15 H 0.06 1.68 8.07 -2.39 -0.02 1.66 16 16 C -0.11 -1.94 4.97 30.62 0.15 -1.79 16 17 C -0.13 -1.73 6.08 30.67 0.19 -1.54 16 18 C 0.08 1.24 6.17 86.36 0.53 1.78 16 19 N -0.59 -12.17 2.97 -821.80 -2.44 -14.62 16 20 C 0.60 13.92 7.71 86.91 0.67 14.59 16 21 O -0.55 -16.54 16.47 -3.72 -0.06 -16.60 16 22 C -0.05 -0.84 7.18 44.29 0.32 -0.52 16 23 C 0.05 0.67 12.63 87.31 1.10 1.78 16 24 N -0.36 -5.30 12.22 -61.43 -0.75 -6.05 16 25 O 0.34 4.98 11.65 140.86 1.64 6.62 16 26 N -0.31 -4.88 9.03 -52.05 -0.47 -5.35 16 27 C 0.12 2.77 5.51 86.37 0.48 3.25 16 28 C 0.13 5.61 6.06 86.93 0.53 6.13 16 29 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 30 H 0.01 0.68 7.31 -2.39 -0.02 0.66 16 31 H 0.00 -0.09 7.59 -2.39 -0.02 -0.11 16 32 H 0.09 2.54 8.09 -2.39 -0.02 2.52 16 33 H 0.07 2.17 8.04 -2.38 -0.02 2.15 16 34 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.07 1.32 7.22 -2.39 -0.02 1.30 16 36 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.11 1.57 4.26 -3.69 -0.02 1.55 16 39 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.25 2.01 8.06 -2.91 -0.02 1.99 16 41 H 0.08 2.19 6.60 -2.39 -0.02 2.17 16 42 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.01 0.53 7.99 -2.38 -0.02 0.51 16 44 H 0.04 1.56 8.14 -2.38 -0.02 1.54 16 Total: -1.00 -72.45 350.51 4.71 -67.73 By element: Atomic # 1 Polarization: 4.07 SS G_CDS: 1.01 Total: 5.08 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: 5.88 Total: 8.31 kcal Atomic # 7 Polarization: -114.26 SS G_CDS: -5.79 Total: -120.04 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 1.58 Total: -9.99 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 2.03 Total: 48.91 kcal Total: -72.45 4.71 -67.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961261911.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.556 kcal (2) G-P(sol) polarization free energy of solvation -72.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds