Wall clock time and date at job start Tue Mar 31 2020 12:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 120.00270 * 2 1 4 4 H 1.48497 * 109.46958 * 240.00247 * 3 2 1 5 5 H 1.48495 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47240 * 120.00210 * 3 2 1 7 7 C 1.38811 * 119.99460 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99739 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00409 * 0.02562 * 7 2 1 10 10 C 1.47427 * 125.64967 * 350.68611 * 9 7 2 11 11 C 1.54905 * 104.83434 * 204.09361 * 10 9 7 12 12 C 1.55152 * 101.58291 * 322.99440 * 11 10 9 13 13 C 1.47024 * 125.65160 * 170.64855 * 9 7 2 14 14 H 1.09003 * 109.88246 * 59.40195 * 13 9 7 15 15 C 1.53001 * 109.88405 * 298.39232 * 13 9 7 16 16 H 1.09007 * 109.52170 * 62.06755 * 15 13 9 17 17 C 1.53070 * 109.62526 * 182.09338 * 15 13 9 18 18 C 1.53035 * 109.65838 * 181.16744 * 17 15 13 19 19 C 1.53187 * 109.31710 * 298.70111 * 18 17 15 20 20 N 1.46929 * 108.77541 * 54.63576 * 19 18 17 21 21 C 1.34774 * 120.63563 * 126.36961 * 20 19 18 22 22 O 1.21497 * 120.00541 * 175.66723 * 21 20 19 23 23 C 1.48279 * 119.99656 * 355.66818 * 21 20 19 24 24 C 1.47487 * 128.71458 * 186.50733 * 23 21 20 25 25 N 1.30645 * 102.71966 * 179.91228 * 24 23 21 26 26 O 1.20832 * 109.61780 * 0.36527 * 25 24 23 27 27 N 1.20904 * 115.90888 * 359.73887 * 26 25 24 28 28 C 1.46927 * 118.73745 * 306.39174 * 20 19 18 29 29 H 0.97005 * 119.99219 * 0.02562 * 1 2 3 30 30 H 1.09003 * 110.36409 * 322.93739 * 10 9 7 31 31 H 1.09006 * 110.36196 * 85.25524 * 10 9 7 32 32 H 1.09007 * 111.00250 * 81.06961 * 11 10 9 33 33 H 1.09001 * 111.00124 * 204.87432 * 11 10 9 34 34 H 1.09005 * 110.71939 * 277.13524 * 12 11 10 35 35 H 1.08998 * 110.72098 * 153.86520 * 12 11 10 36 36 H 1.09003 * 109.34132 * 61.14519 * 17 15 13 37 37 H 1.08998 * 109.44133 * 301.25661 * 17 15 13 38 38 H 1.09008 * 109.49696 * 178.74816 * 18 17 15 39 39 H 1.09006 * 109.49819 * 58.65689 * 18 17 15 40 40 H 1.09001 * 109.59004 * 294.84749 * 19 18 17 41 41 H 1.09002 * 109.70623 * 174.49028 * 19 18 17 42 42 H 1.08008 * 128.63821 * 0.03959 * 24 23 21 43 43 H 1.09002 * 109.58725 * 173.38925 * 28 20 19 44 44 H 1.08998 * 109.59039 * 293.68249 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 -0.1280 -2.5412 0.1916 11 6 -0.3081 -3.9872 0.7170 12 6 0.7738 -4.7498 -0.0924 13 6 1.9179 -3.7195 -0.1964 14 1 2.6630 -3.9103 0.5760 15 6 2.5687 -3.8023 -1.5786 16 1 3.3743 -3.0710 -1.6464 17 6 3.1377 -5.2066 -1.7956 18 6 3.8144 -5.2818 -3.1662 19 6 2.7771 -5.0064 -4.2592 20 7 2.1243 -3.7204 -3.9784 21 6 2.0810 -2.7530 -4.9158 22 8 1.4707 -1.7248 -4.7000 23 6 2.7782 -2.9436 -6.2105 24 6 2.9670 -1.9761 -7.3076 25 7 3.6426 -2.6668 -8.1870 26 8 3.8297 -3.7846 -7.7680 27 7 3.3787 -4.0201 -6.6713 28 6 1.5199 -3.5090 -2.6560 29 1 -0.4849 0.8401 -0.0004 30 1 -0.4908 -1.8225 0.9265 31 1 -0.6521 -2.4137 -0.7557 32 1 -0.1067 -4.0421 1.7869 33 1 -1.3053 -4.3642 0.4896 34 1 0.4008 -5.0130 -1.0822 35 1 1.1030 -5.6387 0.4457 36 1 2.3283 -5.9352 -1.7498 37 1 3.8685 -5.4263 -1.0172 38 1 4.2380 -6.2761 -3.3088 39 1 4.6080 -4.5365 -3.2215 40 1 2.0314 -5.8014 -4.2641 41 1 3.2698 -4.9616 -5.2305 42 1 2.6320 -0.9511 -7.3680 43 1 1.1852 -2.4753 -2.5683 44 1 0.6702 -4.1801 -2.5309 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963377974.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:51 Heat of formation + Delta-G solvation = 122.597502 kcal Electronic energy + Delta-G solvation = -28510.122159 eV Core-core repulsion = 24662.240932 eV Total energy + Delta-G solvation = -3847.881226 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -47.07197 -40.21279 -38.33759 -36.54118 -34.99713 -34.64276 -32.99232 -32.27835 -31.06978 -29.27820 -27.34920 -26.28365 -24.96233 -24.46836 -23.79657 -22.75707 -21.28366 -20.41736 -19.73233 -19.21024 -18.48160 -18.24146 -17.37825 -16.59605 -16.11023 -15.16889 -15.07796 -14.87752 -14.55676 -14.26621 -14.10654 -13.83651 -13.37898 -13.13032 -13.00347 -12.82010 -12.43035 -12.10656 -11.87844 -11.57521 -11.54487 -11.52276 -11.31057 -10.95865 -10.88286 -10.80227 -10.76334 -10.51503 -10.21303 -10.17375 -10.06460 -9.85856 -9.79546 -9.58984 -9.51812 -8.55265 -8.45640 -6.77551 -5.66764 -3.02832 0.61157 1.17515 2.55911 2.98797 3.28798 3.32264 3.43933 3.49123 3.49284 3.78471 4.44101 4.52992 4.60164 4.92682 5.00763 5.12558 5.19645 5.30338 5.37325 5.53638 5.60599 5.64779 5.69519 5.81295 5.82847 5.90369 5.95311 6.05453 6.14289 6.19599 6.32726 6.36071 6.47599 6.58772 6.66966 6.73060 6.76983 6.94054 7.05299 7.40233 7.60471 7.64160 7.86978 8.02185 8.26734 8.34624 9.25589 9.87027 10.53113 11.42973 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012584 B = 0.004863 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.484694 B = 5756.892385 C = 7190.843171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.001 4.001 3 Si 0.907 3.093 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.226 4.226 8 H 0.072 0.928 9 N -0.594 5.594 10 C 0.168 3.832 11 C -0.150 4.150 12 C -0.129 4.129 13 C 0.169 3.831 14 H 0.037 0.963 15 C -0.106 4.106 16 H 0.071 0.929 17 C -0.117 4.117 18 C -0.130 4.130 19 C 0.079 3.921 20 N -0.588 5.588 21 C 0.592 3.408 22 O -0.500 6.500 23 C -0.024 4.024 24 C 0.035 3.965 25 N -0.355 5.355 26 O 0.329 5.671 27 N -0.324 5.324 28 C 0.125 3.875 29 H 0.252 0.748 30 H 0.081 0.919 31 H 0.020 0.980 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.064 0.936 35 H 0.057 0.943 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.070 0.930 41 H 0.114 0.886 42 H 0.227 0.773 43 H 0.115 0.885 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.117 -12.246 -10.114 16.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.198 4.198 3 Si 0.738 3.262 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.213 1.213 7 C -0.355 4.355 8 H 0.090 0.910 9 N -0.318 5.318 10 C 0.043 3.957 11 C -0.189 4.189 12 C -0.167 4.167 13 C 0.061 3.939 14 H 0.054 0.946 15 C -0.128 4.128 16 H 0.089 0.911 17 C -0.155 4.155 18 C -0.168 4.168 19 C -0.044 4.044 20 N -0.321 5.321 21 C 0.375 3.625 22 O -0.372 6.372 23 C -0.189 4.189 24 C -0.150 4.150 25 N -0.078 5.078 26 O 0.108 5.892 27 N -0.049 5.049 28 C 0.005 3.995 29 H 0.063 0.937 30 H 0.100 0.900 31 H 0.038 0.962 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.131 0.869 42 H 0.244 0.756 43 H 0.133 0.867 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.288 -12.249 -10.578 17.026 hybrid contribution 0.112 1.524 0.393 1.578 sum 5.400 -10.724 -10.185 15.745 Atomic orbital electron populations 1.69899 1.04852 1.25083 1.56509 1.24765 0.95608 0.97537 1.01887 0.86278 0.78604 0.83584 0.77780 1.21195 1.21604 1.21301 1.18859 0.90189 0.82334 1.44083 0.90983 1.44530 1.03527 1.00129 1.83613 1.21560 0.84600 0.90743 0.98809 1.23029 0.97034 0.99690 0.99134 1.22676 0.96967 0.97240 0.99793 1.20888 0.93683 0.87085 0.92287 0.94567 1.21998 0.98218 0.95514 0.97081 0.91081 1.21639 0.99931 0.97959 0.95946 1.21873 0.97919 1.01710 0.95331 1.22462 0.96068 0.84784 1.01126 1.48089 1.55495 1.14278 1.14241 1.16659 0.80850 0.84249 0.80781 1.90928 1.41690 1.26907 1.77693 1.26533 1.02632 0.89683 1.00039 1.27757 0.96827 1.03296 0.87124 1.75048 1.15949 0.93637 1.23134 1.85075 1.55262 1.24975 1.23935 1.75183 1.10207 1.22803 0.96756 1.21917 0.94621 1.05344 0.77574 0.93709 0.90045 0.96227 0.92432 0.92591 0.91740 0.92476 0.91852 0.91870 0.90965 0.91845 0.91210 0.86925 0.75615 0.86664 0.91506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.69 10.37 55.49 0.58 -26.12 16 2 C 0.00 -0.03 5.48 -17.43 -0.10 -0.13 16 3 Si 0.91 22.46 29.55 -169.99 -5.02 17.43 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.23 -6.12 9.87 -15.06 -0.15 -6.27 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.59 -14.31 2.42 -162.57 -0.39 -14.70 16 10 C 0.17 3.94 5.53 -2.53 -0.01 3.93 16 11 C -0.15 -2.74 7.08 -24.59 -0.17 -2.92 16 12 C -0.13 -2.10 5.21 -24.90 -0.13 -2.23 16 13 C 0.17 3.24 2.96 -66.95 -0.20 3.04 16 14 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 15 C -0.11 -1.84 2.10 -90.48 -0.19 -2.03 16 16 H 0.07 1.41 8.04 -51.92 -0.42 0.99 16 17 C -0.12 -1.52 4.91 -26.68 -0.13 -1.65 16 18 C -0.13 -1.51 6.08 -26.62 -0.16 -1.67 16 19 C 0.08 0.97 6.34 -3.71 -0.02 0.94 16 20 N -0.59 -9.35 2.97 -173.71 -0.52 -9.86 16 21 C 0.59 10.02 7.72 -12.13 -0.09 9.93 16 22 O -0.50 -10.45 16.48 5.37 0.09 -10.36 16 23 C -0.02 -0.32 7.26 -80.07 -0.58 -0.90 16 24 C 0.04 0.40 12.63 -14.29 -0.18 0.21 16 25 N -0.35 -3.95 12.22 30.71 0.38 -3.57 16 26 O 0.33 3.59 11.65 27.27 0.32 3.91 16 27 N -0.32 -3.83 8.87 33.49 0.30 -3.54 16 28 C 0.13 2.28 5.27 -3.71 -0.02 2.26 16 29 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 30 H 0.08 2.17 6.54 -51.93 -0.34 1.83 16 31 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.06 1.00 5.42 -51.93 -0.28 0.72 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.77 7.10 -51.93 -0.37 0.40 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.07 0.67 8.14 -51.92 -0.42 0.24 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.11 1.32 3.88 -65.85 -0.26 1.06 16 42 H 0.23 1.94 8.06 -52.48 -0.42 1.52 16 43 H 0.12 2.70 6.66 -51.93 -0.35 2.36 16 44 H 0.07 1.16 5.93 -51.93 -0.31 0.85 16 LS Contribution 345.36 15.07 5.20 5.20 Total: -1.00 -30.54 345.36 -7.31 -37.84 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -6.09 Total: 1.24 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: -2.14 Total: 2.52 kcal Atomic # 7 Polarization: -58.13 SS G_CDS: 0.34 Total: -57.79 kcal Atomic # 8 Polarization: -6.86 SS G_CDS: 0.41 Total: -6.45 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.54 -7.31 -37.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963377974.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.440 kcal (2) G-P(sol) polarization free energy of solvation -30.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds