Wall clock time and date at job start Tue Mar 31 2020 12:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 120.00270 * 2 1 4 4 H 1.48497 * 109.46958 * 240.00247 * 3 2 1 5 5 H 1.48495 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47240 * 120.00210 * 3 2 1 7 7 C 1.38811 * 119.99460 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99739 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00409 * 0.02562 * 7 2 1 10 10 C 1.47427 * 125.64967 * 350.68611 * 9 7 2 11 11 C 1.54905 * 104.83434 * 204.09361 * 10 9 7 12 12 C 1.55152 * 101.58291 * 322.99440 * 11 10 9 13 13 C 1.47024 * 125.65160 * 170.64855 * 9 7 2 14 14 H 1.09003 * 109.88246 * 59.40195 * 13 9 7 15 15 C 1.53001 * 109.88405 * 298.39232 * 13 9 7 16 16 H 1.09007 * 109.52170 * 62.06755 * 15 13 9 17 17 C 1.53070 * 109.62526 * 182.09338 * 15 13 9 18 18 C 1.53035 * 109.65838 * 181.16744 * 17 15 13 19 19 C 1.53187 * 109.31710 * 298.70111 * 18 17 15 20 20 N 1.46929 * 108.77541 * 54.63576 * 19 18 17 21 21 C 1.34774 * 120.63563 * 126.36961 * 20 19 18 22 22 O 1.21497 * 120.00541 * 175.66723 * 21 20 19 23 23 C 1.48279 * 119.99656 * 355.66818 * 21 20 19 24 24 C 1.47487 * 128.71458 * 186.50733 * 23 21 20 25 25 N 1.30645 * 102.71966 * 179.91228 * 24 23 21 26 26 O 1.20832 * 109.61780 * 0.36527 * 25 24 23 27 27 N 1.20904 * 115.90888 * 359.73887 * 26 25 24 28 28 C 1.46927 * 118.73745 * 306.39174 * 20 19 18 29 29 H 0.97005 * 119.99219 * 0.02562 * 1 2 3 30 30 H 1.09003 * 110.36409 * 322.93739 * 10 9 7 31 31 H 1.09006 * 110.36196 * 85.25524 * 10 9 7 32 32 H 1.09007 * 111.00250 * 81.06961 * 11 10 9 33 33 H 1.09001 * 111.00124 * 204.87432 * 11 10 9 34 34 H 1.09005 * 110.71939 * 277.13524 * 12 11 10 35 35 H 1.08998 * 110.72098 * 153.86520 * 12 11 10 36 36 H 1.09003 * 109.34132 * 61.14519 * 17 15 13 37 37 H 1.08998 * 109.44133 * 301.25661 * 17 15 13 38 38 H 1.09008 * 109.49696 * 178.74816 * 18 17 15 39 39 H 1.09006 * 109.49819 * 58.65689 * 18 17 15 40 40 H 1.09001 * 109.59004 * 294.84749 * 19 18 17 41 41 H 1.09002 * 109.70623 * 174.49028 * 19 18 17 42 42 H 1.08008 * 128.63821 * 0.03959 * 24 23 21 43 43 H 1.09002 * 109.58725 * 173.38925 * 28 20 19 44 44 H 1.08998 * 109.59039 * 293.68249 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6963 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 -0.1280 -2.5412 0.1916 11 6 -0.3081 -3.9872 0.7170 12 6 0.7738 -4.7498 -0.0924 13 6 1.9179 -3.7195 -0.1964 14 1 2.6630 -3.9103 0.5760 15 6 2.5687 -3.8023 -1.5786 16 1 3.3743 -3.0710 -1.6464 17 6 3.1377 -5.2066 -1.7956 18 6 3.8144 -5.2818 -3.1662 19 6 2.7771 -5.0064 -4.2592 20 7 2.1243 -3.7204 -3.9784 21 6 2.0810 -2.7530 -4.9158 22 8 1.4707 -1.7248 -4.7000 23 6 2.7782 -2.9436 -6.2105 24 6 2.9670 -1.9761 -7.3076 25 7 3.6426 -2.6668 -8.1870 26 8 3.8297 -3.7846 -7.7680 27 7 3.3787 -4.0201 -6.6713 28 6 1.5199 -3.5090 -2.6560 29 1 -0.4849 0.8401 -0.0004 30 1 -0.4908 -1.8225 0.9265 31 1 -0.6521 -2.4137 -0.7557 32 1 -0.1067 -4.0421 1.7869 33 1 -1.3053 -4.3642 0.4896 34 1 0.4008 -5.0130 -1.0822 35 1 1.1030 -5.6387 0.4457 36 1 2.3283 -5.9352 -1.7498 37 1 3.8685 -5.4263 -1.0172 38 1 4.2380 -6.2761 -3.3088 39 1 4.6080 -4.5365 -3.2215 40 1 2.0314 -5.8014 -4.2641 41 1 3.2698 -4.9616 -5.2305 42 1 2.6320 -0.9511 -7.3680 43 1 1.1852 -2.4753 -2.5683 44 1 0.6702 -4.1801 -2.5309 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963377974.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:50 Heat of formation + Delta-G solvation = 104.038922 kcal Electronic energy + Delta-G solvation = -28510.926919 eV Core-core repulsion = 24662.240932 eV Total energy + Delta-G solvation = -3848.685987 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.04750 -41.53753 -39.84341 -37.96152 -36.04553 -35.64646 -34.68643 -33.81031 -32.35777 -31.15058 -28.76481 -27.55197 -26.50031 -25.98003 -24.83315 -24.09420 -22.51236 -21.94463 -21.22816 -20.18053 -19.86217 -19.27552 -18.78719 -18.33936 -17.49029 -16.85010 -16.44956 -16.15219 -15.86782 -15.71217 -15.62726 -15.29370 -14.62642 -14.38512 -14.26674 -13.99214 -13.86186 -13.71599 -13.35513 -13.10845 -12.94761 -12.83104 -12.76465 -12.64815 -12.48342 -12.09934 -11.96509 -11.90743 -11.80626 -11.72196 -11.56051 -11.40715 -11.33816 -11.13139 -11.08604 -10.64272 -9.77298 -8.77629 -7.80907 -5.15735 -0.44832 0.23763 1.36412 1.39894 1.43808 1.48404 1.72528 2.23295 2.39260 2.49237 2.76905 3.33511 3.37560 3.60558 3.64197 3.88801 3.91148 4.05450 4.12558 4.18056 4.29815 4.31237 4.36776 4.37612 4.57905 4.70222 4.80529 4.81237 4.91874 4.93948 5.01447 5.07538 5.12911 5.22753 5.28498 5.33660 5.41433 5.50988 5.56676 5.61045 5.73010 5.85446 6.12031 6.30354 6.73467 7.15336 7.30209 7.85412 8.49678 9.27424 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012584 B = 0.004863 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.484694 B = 5756.892385 C = 7190.843171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.061 4.061 3 Si 0.961 3.039 4 H -0.288 1.288 5 H -0.295 1.295 6 H -0.274 1.274 7 C -0.223 4.223 8 H 0.070 0.930 9 N -0.612 5.612 10 C 0.172 3.828 11 C -0.137 4.137 12 C -0.114 4.114 13 C 0.159 3.841 14 H 0.038 0.962 15 C -0.096 4.096 16 H 0.035 0.965 17 C -0.108 4.108 18 C -0.125 4.125 19 C 0.074 3.926 20 N -0.588 5.588 21 C 0.587 3.413 22 O -0.555 6.555 23 C -0.045 4.045 24 C 0.046 3.954 25 N -0.353 5.353 26 O 0.349 5.651 27 N -0.311 5.311 28 C 0.138 3.862 29 H 0.243 0.757 30 H 0.040 0.960 31 H -0.014 1.014 32 H 0.063 0.937 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.111 0.889 39 H 0.048 0.952 40 H 0.093 0.907 41 H 0.121 0.879 42 H 0.247 0.753 43 H 0.053 0.947 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.725 -15.753 -10.959 20.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.254 4.254 3 Si 0.791 3.209 4 H -0.215 1.215 5 H -0.221 1.221 6 H -0.200 1.200 7 C -0.353 4.353 8 H 0.088 0.912 9 N -0.336 5.336 10 C 0.047 3.953 11 C -0.176 4.176 12 C -0.151 4.151 13 C 0.052 3.948 14 H 0.056 0.944 15 C -0.117 4.117 16 H 0.053 0.947 17 C -0.146 4.146 18 C -0.163 4.163 19 C -0.047 4.047 20 N -0.320 5.320 21 C 0.372 3.628 22 O -0.432 6.432 23 C -0.208 4.208 24 C -0.139 4.139 25 N -0.076 5.076 26 O 0.123 5.877 27 N -0.032 5.032 28 C 0.016 3.984 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.004 0.996 32 H 0.081 0.919 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.116 0.884 36 H 0.104 0.896 37 H 0.095 0.905 38 H 0.130 0.870 39 H 0.067 0.933 40 H 0.111 0.889 41 H 0.138 0.862 42 H 0.263 0.737 43 H 0.071 0.929 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 6.933 -15.831 -11.396 20.702 hybrid contribution -0.326 2.549 0.597 2.638 sum 6.607 -13.282 -10.800 18.349 Atomic orbital electron populations 1.70122 1.05992 1.24789 1.58512 1.25463 0.96389 1.00426 1.03118 0.85406 0.77430 0.80251 0.77846 1.21513 1.22082 1.19982 1.19118 0.90353 0.83863 1.41959 0.91177 1.44745 1.03945 1.01286 1.83607 1.21310 0.84162 0.93613 0.96242 1.22888 0.99307 0.95836 0.99534 1.22660 0.94601 0.97218 1.00652 1.21183 0.94931 0.85474 0.93224 0.94429 1.21810 0.96602 0.97882 0.95455 0.94674 1.21600 1.00917 0.94698 0.97375 1.21879 0.97058 1.03464 0.93879 1.22776 0.96772 0.83219 1.01912 1.48206 1.55104 1.15559 1.13118 1.17048 0.80317 0.83594 0.81884 1.90897 1.44169 1.29039 1.79081 1.26002 1.04235 0.91210 0.99382 1.28083 0.95952 1.03867 0.86040 1.75095 1.16090 0.93510 1.22884 1.85073 1.54401 1.24946 1.23289 1.75139 1.09216 1.22033 0.96813 1.21536 0.95526 1.01880 0.79438 0.94735 0.94130 0.99558 0.91856 0.90162 0.90529 0.88427 0.89585 0.90479 0.87050 0.93264 0.88899 0.86170 0.73677 0.92853 0.90360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.55 10.37 21.65 0.22 -58.32 16 2 C -0.06 -3.58 5.48 84.86 0.46 -3.11 16 3 Si 0.96 48.20 29.55 68.60 2.03 50.23 16 4 H -0.29 -14.42 7.11 99.48 0.71 -13.71 16 5 H -0.29 -14.86 7.11 99.48 0.71 -14.15 16 6 H -0.27 -13.03 7.11 99.48 0.71 -12.32 16 7 C -0.22 -12.64 9.87 84.03 0.83 -11.81 16 8 H 0.07 3.89 7.83 -2.91 -0.02 3.86 16 9 N -0.61 -30.51 2.42 -668.25 -1.62 -32.13 16 10 C 0.17 8.42 5.53 86.85 0.48 8.90 16 11 C -0.14 -4.80 7.08 31.98 0.23 -4.58 16 12 C -0.11 -3.35 5.21 31.78 0.17 -3.19 16 13 C 0.16 5.95 2.96 45.34 0.13 6.08 16 14 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 15 C -0.10 -3.26 2.10 -10.70 -0.02 -3.28 16 16 H 0.03 1.43 8.04 -2.38 -0.02 1.41 16 17 C -0.11 -2.41 4.91 30.63 0.15 -2.26 16 18 C -0.12 -2.42 6.08 30.67 0.19 -2.23 16 19 C 0.07 1.61 6.34 86.36 0.55 2.16 16 20 N -0.59 -18.55 2.97 -821.81 -2.44 -21.00 16 21 C 0.59 20.41 7.72 86.92 0.67 21.08 16 22 O -0.56 -24.80 16.48 -3.70 -0.06 -24.86 16 23 C -0.04 -1.16 7.26 44.29 0.32 -0.84 16 24 C 0.05 0.97 12.63 87.31 1.10 2.07 16 25 N -0.35 -7.12 12.22 -61.45 -0.75 -7.87 16 26 O 0.35 6.77 11.65 140.86 1.64 8.41 16 27 N -0.31 -6.67 8.87 -52.05 -0.46 -7.13 16 28 C 0.14 5.10 5.27 86.36 0.45 5.55 16 29 H 0.24 14.87 8.31 -92.70 -0.77 14.10 16 30 H 0.04 2.30 6.54 -2.39 -0.02 2.28 16 31 H -0.01 -0.74 8.14 -2.38 -0.02 -0.76 16 32 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 33 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.08 2.09 5.42 -2.38 -0.01 2.08 16 35 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.09 1.60 7.10 -2.39 -0.02 1.58 16 37 H 0.08 1.57 8.14 -2.39 -0.02 1.56 16 38 H 0.11 1.41 8.14 -2.38 -0.02 1.39 16 39 H 0.05 1.11 8.14 -2.38 -0.02 1.10 16 40 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.12 2.45 3.88 -28.30 -0.11 2.34 16 42 H 0.25 4.01 8.06 -2.91 -0.02 3.98 16 43 H 0.05 2.68 6.66 -2.39 -0.02 2.67 16 44 H 0.08 2.67 5.93 -2.39 -0.01 2.65 16 Total: -1.00 -73.50 345.36 5.19 -68.31 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: 0.92 Total: 9.80 kcal Atomic # 6 Polarization: 8.84 SS G_CDS: 5.71 Total: 14.56 kcal Atomic # 7 Polarization: -121.40 SS G_CDS: -5.05 Total: -126.45 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: 1.58 Total: -16.45 kcal Atomic # 14 Polarization: 48.20 SS G_CDS: 2.03 Total: 50.23 kcal Total: -73.50 5.19 -68.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963377974.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.349 kcal (2) G-P(sol) polarization free energy of solvation -73.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds