Wall clock time and date at job start Tue Mar 31 2020 12:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86806 * 119.99887 * 2 1 4 4 H 1.48505 * 109.46825 * 239.99867 * 3 2 1 5 5 H 1.48501 * 109.47101 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47565 * 119.99646 * 3 2 1 7 7 C 1.38811 * 120.00278 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99879 * 180.02562 * 7 2 1 9 9 N 1.36929 * 119.99670 * 359.97438 * 7 2 1 10 10 C 1.47424 * 125.65046 * 16.03575 * 9 7 2 11 11 C 1.54915 * 104.92830 * 155.79281 * 10 9 7 12 12 C 1.55443 * 101.45167 * 37.00549 * 11 10 9 13 13 C 1.47030 * 125.64757 * 196.01032 * 9 7 2 14 14 H 1.08998 * 109.88245 * 300.65314 * 13 9 7 15 15 C 1.52996 * 109.88402 * 61.66275 * 13 9 7 16 16 H 1.09001 * 109.50005 * 297.13772 * 15 13 9 17 17 C 1.53033 * 109.50017 * 177.03243 * 15 13 9 18 18 C 1.53032 * 109.53990 * 178.68560 * 17 15 13 19 19 C 1.53197 * 109.31497 * 61.36841 * 18 17 15 20 20 N 1.46920 * 108.77306 * 305.36570 * 19 18 17 21 21 C 1.34780 * 120.63352 * 233.63173 * 20 19 18 22 22 O 1.21496 * 120.00008 * 184.75135 * 21 20 19 23 23 C 1.48280 * 119.99647 * 4.74652 * 21 20 19 24 24 C 1.47487 * 128.71272 * 173.79255 * 23 21 20 25 25 N 1.30649 * 102.71692 * 179.90763 * 24 23 21 26 26 O 1.20837 * 109.61827 * 0.36561 * 25 24 23 27 27 N 1.20904 * 115.90930 * 359.73882 * 26 25 24 28 28 C 1.46926 * 118.73937 * 53.60617 * 20 19 18 29 29 H 0.97005 * 120.00504 * 0.02562 * 1 2 3 30 30 H 1.08997 * 110.37084 * 274.68205 * 10 9 7 31 31 H 1.08996 * 110.36548 * 36.90373 * 10 9 7 32 32 H 1.09004 * 111.00113 * 155.14164 * 11 10 9 33 33 H 1.09002 * 111.00619 * 278.98867 * 11 10 9 34 34 H 1.09000 * 110.70535 * 206.14293 * 12 11 10 35 35 H 1.09002 * 110.70758 * 82.89086 * 12 11 10 36 36 H 1.09002 * 109.46519 * 298.71054 * 17 15 13 37 37 H 1.09007 * 109.45618 * 58.66327 * 17 15 13 38 38 H 1.09001 * 109.50149 * 301.41460 * 18 17 15 39 39 H 1.09003 * 109.52619 * 181.33384 * 18 17 15 40 40 H 1.09000 * 109.58619 * 185.57646 * 19 18 17 41 41 H 1.09002 * 109.58521 * 65.15284 * 19 18 17 42 42 H 1.08003 * 128.63836 * 0.03487 * 24 23 21 43 43 H 1.08998 * 109.58900 * 186.60257 * 28 20 19 44 44 H 1.09003 * 109.70291 * 66.24808 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3879 0.0016 10 6 -0.1012 -2.5566 -0.3287 11 6 -0.2332 -4.0304 -0.7873 12 6 0.7614 -4.7424 0.1720 13 6 1.8919 -3.7040 0.3318 14 1 2.7108 -3.9366 -0.3489 15 6 2.3991 -3.7050 1.7752 16 1 3.2050 -2.9783 1.8782 17 6 2.9187 -5.0992 2.1332 18 6 3.4564 -5.0928 3.5659 19 6 2.3214 -4.7372 4.5315 20 7 1.7203 -3.4657 4.1069 21 6 1.6010 -2.4395 4.9725 22 8 1.0250 -1.4242 4.6354 23 6 2.1727 -2.5497 6.3362 24 6 2.2643 -1.5161 7.3843 25 7 2.8466 -2.1524 8.3656 26 8 3.0759 -3.2908 8.0315 27 7 2.7308 -3.5928 6.9128 28 6 1.2521 -3.3337 2.7205 29 1 -0.4851 0.8400 -0.0004 30 1 -0.7183 -2.3767 0.5516 31 1 -0.3862 -1.8814 -1.1354 32 1 -1.2497 -4.3956 -0.6408 33 1 0.0756 -4.1455 -1.8263 34 1 1.1411 -5.6597 -0.2780 35 1 0.2893 -4.9494 1.1324 36 1 2.1060 -5.8212 2.0536 37 1 3.7186 -5.3760 1.4463 38 1 4.2526 -4.3534 3.6525 39 1 3.8480 -6.0797 3.8125 40 1 2.7193 -4.6343 5.5410 41 1 1.5660 -5.5229 4.5126 42 1 1.9308 -0.4894 7.3499 43 1 0.9444 -2.3046 2.5351 44 1 0.4086 -4.0032 2.5521 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963377975.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:54 Heat of formation + Delta-G solvation = 121.311020 kcal Electronic energy + Delta-G solvation = -28557.704871 eV Core-core repulsion = 24709.767858 eV Total energy + Delta-G solvation = -3847.937012 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -47.05373 -40.18648 -38.31537 -36.51764 -34.97897 -34.62466 -32.97056 -32.26281 -31.05147 -29.27104 -27.34247 -26.27157 -24.94307 -24.44595 -23.77438 -22.73756 -21.27487 -20.40933 -19.73094 -19.19327 -18.46188 -18.22606 -17.35237 -16.58418 -16.07913 -15.14191 -15.05433 -14.84947 -14.53889 -14.26186 -14.10181 -13.84226 -13.36650 -13.11122 -12.98473 -12.80129 -12.41627 -12.12581 -11.86235 -11.56074 -11.52555 -11.50734 -11.29396 -10.93423 -10.86371 -10.78304 -10.76277 -10.49727 -10.20186 -10.14913 -10.06684 -9.86102 -9.77977 -9.60932 -9.55098 -8.52611 -8.42836 -6.72413 -5.70312 -3.05770 0.63008 1.19048 2.58369 3.01856 3.30444 3.34001 3.43708 3.48945 3.49182 3.80544 4.46249 4.53144 4.61754 4.94640 5.02550 5.14482 5.21272 5.32250 5.38549 5.54689 5.58873 5.66076 5.71651 5.83263 5.84746 5.90834 5.97333 6.07378 6.15923 6.21019 6.33435 6.36787 6.48514 6.58838 6.67952 6.76959 6.78136 6.96343 7.06482 7.43610 7.56074 7.66869 7.84248 8.05140 8.28491 8.33323 9.24875 9.86171 10.54801 11.42110 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012446 B = 0.004981 C = 0.003949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2249.265843 B = 5620.039262 C = 7089.521722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.004 3.996 3 Si 0.905 3.095 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.231 4.231 8 H 0.070 0.930 9 N -0.593 5.593 10 C 0.173 3.827 11 C -0.150 4.150 12 C -0.128 4.128 13 C 0.168 3.832 14 H 0.036 0.964 15 C -0.106 4.106 16 H 0.071 0.929 17 C -0.117 4.117 18 C -0.130 4.130 19 C 0.078 3.922 20 N -0.588 5.588 21 C 0.591 3.409 22 O -0.498 6.498 23 C -0.023 4.023 24 C 0.035 3.965 25 N -0.355 5.355 26 O 0.328 5.672 27 N -0.324 5.324 28 C 0.126 3.874 29 H 0.253 0.747 30 H 0.026 0.974 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.114 0.886 41 H 0.069 0.931 42 H 0.227 0.773 43 H 0.117 0.883 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.002 -11.557 10.746 16.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.194 4.194 3 Si 0.735 3.265 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.360 4.360 8 H 0.088 0.912 9 N -0.317 5.317 10 C 0.048 3.952 11 C -0.189 4.189 12 C -0.166 4.166 13 C 0.060 3.940 14 H 0.054 0.946 15 C -0.127 4.127 16 H 0.089 0.911 17 C -0.155 4.155 18 C -0.168 4.168 19 C -0.045 4.045 20 N -0.321 5.321 21 C 0.374 3.626 22 O -0.371 6.371 23 C -0.188 4.188 24 C -0.150 4.150 25 N -0.078 5.078 26 O 0.107 5.893 27 N -0.050 5.050 28 C 0.006 3.994 29 H 0.064 0.936 30 H 0.044 0.956 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.131 0.869 41 H 0.088 0.912 42 H 0.244 0.756 43 H 0.135 0.865 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.124 -11.530 11.241 16.622 hybrid contribution 0.143 1.518 -0.480 1.599 sum 4.267 -10.012 10.761 15.305 Atomic orbital electron populations 1.69900 1.04920 1.25293 1.55698 1.24852 0.95561 0.97587 1.01390 0.86320 0.78689 0.83659 0.77799 1.21274 1.21599 1.21132 1.18808 0.90091 0.82246 1.44837 0.91183 1.44484 1.06921 1.01433 1.78841 1.21396 0.85359 0.89788 0.98639 1.23072 0.97524 0.99865 0.98451 1.22715 0.97261 0.97265 0.99380 1.20913 0.94291 0.87392 0.91399 0.94638 1.21975 0.97908 0.95434 0.97407 0.91054 1.21642 1.00537 0.98053 0.95259 1.21875 0.97645 1.01529 0.95788 1.22466 0.96067 0.85200 1.00742 1.48086 1.59221 1.12577 1.12237 1.16665 0.80617 0.84249 0.81068 1.90934 1.41337 1.29122 1.75672 1.26551 1.02946 0.89563 0.99789 1.27755 0.97949 1.03168 0.86143 1.75049 1.15386 0.93525 1.23832 1.85075 1.57315 1.23110 1.23774 1.75179 1.11830 1.23077 0.94884 1.21915 0.95844 1.05740 0.75914 0.93637 0.95589 0.91547 0.92537 0.92456 0.92491 0.91728 0.91856 0.91913 0.91856 0.91013 0.86909 0.91242 0.75626 0.86459 0.91599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.58 10.63 55.49 0.59 -25.99 16 2 C 0.00 0.10 5.47 -17.43 -0.10 0.01 16 3 Si 0.90 22.43 29.55 -169.99 -5.02 17.40 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 6 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 7 C -0.23 -6.26 9.85 -15.06 -0.15 -6.40 16 8 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 9 N -0.59 -14.26 2.39 -162.57 -0.39 -14.65 16 10 C 0.17 4.05 5.39 -2.53 -0.01 4.03 16 11 C -0.15 -2.73 7.11 -24.42 -0.17 -2.90 16 12 C -0.13 -2.09 5.20 -24.74 -0.13 -2.22 16 13 C 0.17 3.23 2.97 -66.95 -0.20 3.03 16 14 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 15 C -0.11 -1.84 2.10 -90.50 -0.19 -2.03 16 16 H 0.07 1.43 8.06 -51.93 -0.42 1.01 16 17 C -0.12 -1.54 4.89 -26.70 -0.13 -1.67 16 18 C -0.13 -1.53 6.08 -26.61 -0.16 -1.69 16 19 C 0.08 0.98 6.34 -3.71 -0.02 0.95 16 20 N -0.59 -9.49 2.97 -173.71 -0.52 -10.01 16 21 C 0.59 10.17 7.72 -12.13 -0.09 10.08 16 22 O -0.50 -10.58 16.48 5.37 0.09 -10.50 16 23 C -0.02 -0.32 7.26 -80.07 -0.58 -0.90 16 24 C 0.04 0.40 12.63 -14.29 -0.18 0.22 16 25 N -0.35 -4.00 12.22 30.72 0.38 -3.63 16 26 O 0.33 3.64 11.65 27.26 0.32 3.96 16 27 N -0.32 -3.89 8.87 33.49 0.30 -3.59 16 28 C 0.13 2.32 5.27 -3.71 -0.02 2.30 16 29 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 30 H 0.03 0.66 8.03 -51.93 -0.42 0.25 16 31 H 0.07 1.75 7.02 -51.93 -0.36 1.39 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 1.00 5.43 -51.93 -0.28 0.72 16 36 H 0.06 0.77 7.04 -51.93 -0.37 0.41 16 37 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.11 1.34 3.86 -66.42 -0.26 1.08 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.23 1.99 8.06 -52.48 -0.42 1.57 16 43 H 0.12 2.80 6.64 -51.93 -0.34 2.46 16 44 H 0.07 1.16 5.97 -51.93 -0.31 0.85 16 LS Contribution 345.76 15.07 5.21 5.21 Total: -1.00 -30.53 345.76 -7.30 -37.83 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -6.11 Total: 1.14 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: -2.14 Total: 2.82 kcal Atomic # 7 Polarization: -58.22 SS G_CDS: 0.36 Total: -57.87 kcal Atomic # 8 Polarization: -6.95 SS G_CDS: 0.41 Total: -6.54 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.53 -7.30 -37.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963377975.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.139 kcal (2) G-P(sol) polarization free energy of solvation -30.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds