Wall clock time and date at job start Tue Mar 31 2020 12:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86806 * 119.99887 * 2 1 4 4 H 1.48505 * 109.46825 * 239.99867 * 3 2 1 5 5 H 1.48501 * 109.47101 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47565 * 119.99646 * 3 2 1 7 7 C 1.38811 * 120.00278 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99879 * 180.02562 * 7 2 1 9 9 N 1.36929 * 119.99670 * 359.97438 * 7 2 1 10 10 C 1.47424 * 125.65046 * 16.03575 * 9 7 2 11 11 C 1.54915 * 104.92830 * 155.79281 * 10 9 7 12 12 C 1.55443 * 101.45167 * 37.00549 * 11 10 9 13 13 C 1.47030 * 125.64757 * 196.01032 * 9 7 2 14 14 H 1.08998 * 109.88245 * 300.65314 * 13 9 7 15 15 C 1.52996 * 109.88402 * 61.66275 * 13 9 7 16 16 H 1.09001 * 109.50005 * 297.13772 * 15 13 9 17 17 C 1.53033 * 109.50017 * 177.03243 * 15 13 9 18 18 C 1.53032 * 109.53990 * 178.68560 * 17 15 13 19 19 C 1.53197 * 109.31497 * 61.36841 * 18 17 15 20 20 N 1.46920 * 108.77306 * 305.36570 * 19 18 17 21 21 C 1.34780 * 120.63352 * 233.63173 * 20 19 18 22 22 O 1.21496 * 120.00008 * 184.75135 * 21 20 19 23 23 C 1.48280 * 119.99647 * 4.74652 * 21 20 19 24 24 C 1.47487 * 128.71272 * 173.79255 * 23 21 20 25 25 N 1.30649 * 102.71692 * 179.90763 * 24 23 21 26 26 O 1.20837 * 109.61827 * 0.36561 * 25 24 23 27 27 N 1.20904 * 115.90930 * 359.73882 * 26 25 24 28 28 C 1.46926 * 118.73937 * 53.60617 * 20 19 18 29 29 H 0.97005 * 120.00504 * 0.02562 * 1 2 3 30 30 H 1.08997 * 110.37084 * 274.68205 * 10 9 7 31 31 H 1.08996 * 110.36548 * 36.90373 * 10 9 7 32 32 H 1.09004 * 111.00113 * 155.14164 * 11 10 9 33 33 H 1.09002 * 111.00619 * 278.98867 * 11 10 9 34 34 H 1.09000 * 110.70535 * 206.14293 * 12 11 10 35 35 H 1.09002 * 110.70758 * 82.89086 * 12 11 10 36 36 H 1.09002 * 109.46519 * 298.71054 * 17 15 13 37 37 H 1.09007 * 109.45618 * 58.66327 * 17 15 13 38 38 H 1.09001 * 109.50149 * 301.41460 * 18 17 15 39 39 H 1.09003 * 109.52619 * 181.33384 * 18 17 15 40 40 H 1.09000 * 109.58619 * 185.57646 * 19 18 17 41 41 H 1.09002 * 109.58521 * 65.15284 * 19 18 17 42 42 H 1.08003 * 128.63836 * 0.03487 * 24 23 21 43 43 H 1.08998 * 109.58900 * 186.60257 * 28 20 19 44 44 H 1.09003 * 109.70291 * 66.24808 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3879 0.0016 10 6 -0.1012 -2.5566 -0.3287 11 6 -0.2332 -4.0304 -0.7873 12 6 0.7614 -4.7424 0.1720 13 6 1.8919 -3.7040 0.3318 14 1 2.7108 -3.9366 -0.3489 15 6 2.3991 -3.7050 1.7752 16 1 3.2050 -2.9783 1.8782 17 6 2.9187 -5.0992 2.1332 18 6 3.4564 -5.0928 3.5659 19 6 2.3214 -4.7372 4.5315 20 7 1.7203 -3.4657 4.1069 21 6 1.6010 -2.4395 4.9725 22 8 1.0250 -1.4242 4.6354 23 6 2.1727 -2.5497 6.3362 24 6 2.2643 -1.5161 7.3843 25 7 2.8466 -2.1524 8.3656 26 8 3.0759 -3.2908 8.0315 27 7 2.7308 -3.5928 6.9128 28 6 1.2521 -3.3337 2.7205 29 1 -0.4851 0.8400 -0.0004 30 1 -0.7183 -2.3767 0.5516 31 1 -0.3862 -1.8814 -1.1354 32 1 -1.2497 -4.3956 -0.6408 33 1 0.0756 -4.1455 -1.8263 34 1 1.1411 -5.6597 -0.2780 35 1 0.2893 -4.9494 1.1324 36 1 2.1060 -5.8212 2.0536 37 1 3.7186 -5.3760 1.4463 38 1 4.2526 -4.3534 3.6525 39 1 3.8480 -6.0797 3.8125 40 1 2.7193 -4.6343 5.5410 41 1 1.5660 -5.5229 4.5126 42 1 1.9308 -0.4894 7.3499 43 1 0.9444 -2.3046 2.5351 44 1 0.4086 -4.0032 2.5521 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963377975.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:53 Heat of formation + Delta-G solvation = 102.716183 kcal Electronic energy + Delta-G solvation = -28558.511203 eV Core-core repulsion = 24709.767858 eV Total energy + Delta-G solvation = -3848.743345 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.04539 -41.52773 -39.82965 -37.94931 -36.04182 -35.64483 -34.67484 -33.80695 -32.34718 -31.14305 -28.77036 -27.54655 -26.48492 -25.97220 -24.82742 -24.08619 -22.51477 -21.94518 -21.22472 -20.17941 -19.84970 -19.27635 -18.77336 -18.33806 -17.47173 -16.82496 -16.43851 -16.16454 -15.87500 -15.71096 -15.62276 -15.28958 -14.62350 -14.37796 -14.26074 -14.02784 -13.86085 -13.71364 -13.34697 -13.07846 -12.92075 -12.84076 -12.76354 -12.63267 -12.48045 -12.09199 -11.96934 -11.90468 -11.82907 -11.71218 -11.57336 -11.42149 -11.33039 -11.13488 -11.07704 -10.62275 -9.76267 -8.72554 -7.84908 -5.18787 -0.44620 0.23678 1.37187 1.39362 1.43185 1.47774 1.73527 2.23546 2.39296 2.48776 2.77225 3.33649 3.37482 3.60447 3.65085 3.90024 3.91540 4.06269 4.13780 4.17233 4.30648 4.32104 4.36801 4.38503 4.58642 4.71404 4.80978 4.82014 4.91979 4.94702 5.02803 5.08010 5.13812 5.23213 5.28804 5.34977 5.42232 5.50575 5.57758 5.62541 5.70081 5.83582 6.13259 6.28849 6.74635 7.14934 7.30297 7.84557 8.51132 9.26479 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012446 B = 0.004981 C = 0.003949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2249.265843 B = 5620.039262 C = 7089.521722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.055 4.055 3 Si 0.959 3.041 4 H -0.274 1.274 5 H -0.295 1.295 6 H -0.287 1.287 7 C -0.228 4.228 8 H 0.068 0.932 9 N -0.611 5.611 10 C 0.178 3.822 11 C -0.137 4.137 12 C -0.113 4.113 13 C 0.158 3.842 14 H 0.038 0.962 15 C -0.095 4.095 16 H 0.034 0.966 17 C -0.108 4.108 18 C -0.125 4.125 19 C 0.074 3.926 20 N -0.589 5.589 21 C 0.586 3.414 22 O -0.555 6.555 23 C -0.044 4.044 24 C 0.045 3.955 25 N -0.353 5.353 26 O 0.350 5.650 27 N -0.310 5.310 28 C 0.139 3.861 29 H 0.244 0.756 30 H -0.008 1.008 31 H 0.025 0.975 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.098 0.902 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.048 0.952 39 H 0.111 0.889 40 H 0.122 0.878 41 H 0.093 0.907 42 H 0.247 0.753 43 H 0.054 0.946 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.517 -15.055 11.864 19.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.249 4.249 3 Si 0.788 3.212 4 H -0.200 1.200 5 H -0.221 1.221 6 H -0.214 1.214 7 C -0.358 4.358 8 H 0.086 0.914 9 N -0.335 5.335 10 C 0.053 3.947 11 C -0.176 4.176 12 C -0.151 4.151 13 C 0.051 3.949 14 H 0.056 0.944 15 C -0.117 4.117 16 H 0.053 0.947 17 C -0.146 4.146 18 C -0.163 4.163 19 C -0.047 4.047 20 N -0.320 5.320 21 C 0.371 3.629 22 O -0.431 6.431 23 C -0.208 4.208 24 C -0.140 4.140 25 N -0.076 5.076 26 O 0.123 5.877 27 N -0.032 5.032 28 C 0.017 3.983 29 H 0.053 0.947 30 H 0.010 0.990 31 H 0.043 0.957 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.116 0.884 35 H 0.094 0.906 36 H 0.104 0.896 37 H 0.096 0.904 38 H 0.067 0.933 39 H 0.129 0.871 40 H 0.139 0.861 41 H 0.111 0.889 42 H 0.263 0.737 43 H 0.072 0.928 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.678 -15.103 12.338 20.311 hybrid contribution -0.268 2.541 -0.768 2.668 sum 5.409 -12.561 11.570 17.914 Atomic orbital electron populations 1.70103 1.06087 1.24981 1.57792 1.25532 0.96313 1.00472 1.02588 0.85451 0.77515 0.80327 0.77892 1.19959 1.22125 1.21386 1.19061 0.90244 0.83777 1.42694 0.91389 1.44698 1.07199 1.02462 1.79114 1.21156 0.84755 0.92919 0.95884 1.22939 0.99750 0.95680 0.99183 1.22701 0.95261 0.97393 0.99734 1.21200 0.95482 0.85842 0.92332 0.94424 1.21793 0.96175 0.97749 0.95959 0.94696 1.21601 1.01656 0.94815 0.96522 1.21882 0.96716 1.03249 0.94440 1.22783 0.96918 0.83671 1.01352 1.48206 1.58772 1.13867 1.11168 1.17060 0.79923 0.83618 0.82310 1.90903 1.43904 1.31199 1.77124 1.26010 1.04871 0.91140 0.98791 1.28077 0.97041 1.03690 0.85153 1.75097 1.15555 0.93381 1.23524 1.85073 1.56420 1.23102 1.23104 1.75134 1.10758 1.22357 0.94943 1.21522 0.96761 1.02166 0.77844 0.94685 0.99008 0.95679 0.90101 0.91741 0.88393 0.90592 0.89584 0.90442 0.93284 0.87063 0.86146 0.88932 0.73704 0.92780 0.90523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.50 10.63 21.65 0.23 -58.27 16 2 C -0.06 -3.24 5.47 84.86 0.46 -2.78 16 3 Si 0.96 48.20 29.55 68.60 2.03 50.23 16 4 H -0.27 -13.06 7.11 99.48 0.71 -12.35 16 5 H -0.30 -14.94 7.11 99.48 0.71 -14.23 16 6 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 7 C -0.23 -12.90 9.85 84.03 0.83 -12.07 16 8 H 0.07 3.78 7.83 -2.91 -0.02 3.75 16 9 N -0.61 -30.41 2.39 -668.25 -1.60 -32.01 16 10 C 0.18 8.69 5.39 86.86 0.47 9.16 16 11 C -0.14 -4.76 7.11 32.09 0.23 -4.53 16 12 C -0.11 -3.33 5.20 31.88 0.17 -3.17 16 13 C 0.16 5.93 2.97 45.34 0.13 6.07 16 14 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 15 C -0.10 -3.26 2.10 -10.72 -0.02 -3.29 16 16 H 0.03 1.43 8.06 -2.39 -0.02 1.41 16 17 C -0.11 -2.44 4.89 30.62 0.15 -2.29 16 18 C -0.12 -2.46 6.08 30.67 0.19 -2.27 16 19 C 0.07 1.63 6.34 86.37 0.55 2.18 16 20 N -0.59 -18.89 2.97 -821.81 -2.44 -21.34 16 21 C 0.59 20.75 7.72 86.91 0.67 21.43 16 22 O -0.55 -25.22 16.48 -3.70 -0.06 -25.28 16 23 C -0.04 -1.18 7.26 44.29 0.32 -0.86 16 24 C 0.05 0.98 12.63 87.31 1.10 2.08 16 25 N -0.35 -7.23 12.22 -61.42 -0.75 -7.98 16 26 O 0.35 6.88 11.65 140.85 1.64 8.52 16 27 N -0.31 -6.78 8.87 -52.05 -0.46 -7.24 16 28 C 0.14 5.22 5.27 86.36 0.45 5.67 16 29 H 0.24 14.97 8.31 -92.70 -0.77 14.20 16 30 H -0.01 -0.44 8.03 -2.39 -0.02 -0.46 16 31 H 0.02 1.40 7.02 -2.39 -0.02 1.38 16 32 H 0.08 2.43 8.14 -2.38 -0.02 2.41 16 33 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.08 2.08 5.43 -2.39 -0.01 2.07 16 36 H 0.09 1.62 7.04 -2.39 -0.02 1.60 16 37 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 38 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.12 2.50 3.86 -29.37 -0.11 2.39 16 41 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.25 4.12 8.06 -2.91 -0.02 4.10 16 43 H 0.05 2.77 6.64 -2.39 -0.02 2.76 16 44 H 0.08 2.67 5.97 -2.39 -0.01 2.66 16 Total: -1.00 -73.75 345.76 5.21 -68.55 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: 0.92 Total: 9.48 kcal Atomic # 6 Polarization: 9.64 SS G_CDS: 5.70 Total: 15.34 kcal Atomic # 7 Polarization: -121.82 SS G_CDS: -5.02 Total: -126.84 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: 1.58 Total: -16.76 kcal Atomic # 14 Polarization: 48.20 SS G_CDS: 2.03 Total: 50.23 kcal Total: -73.75 5.21 -68.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963377975.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.263 kcal (2) G-P(sol) polarization free energy of solvation -73.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds