Wall clock time and date at job start Tue Mar 31 2020 12:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00231 * 2 1 4 4 H 1.48496 * 109.47316 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47193 * 299.99997 * 3 2 1 6 6 H 1.48502 * 109.46949 * 60.00142 * 3 2 1 7 7 C 1.38816 * 119.99647 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99645 * 180.02562 * 7 2 1 9 9 N 1.36928 * 120.00602 * 359.97438 * 7 2 1 10 10 C 1.47755 * 125.82005 * 16.80576 * 9 7 2 11 11 C 1.54908 * 104.84404 * 155.83001 * 10 9 7 12 12 C 1.55158 * 101.58046 * 37.09072 * 11 10 9 13 13 C 1.47017 * 125.65529 * 196.89400 * 9 7 2 14 14 H 1.09001 * 109.88482 * 300.59935 * 13 9 7 15 15 C 1.53005 * 109.88233 * 61.60781 * 13 9 7 16 16 H 1.09007 * 109.49775 * 298.71366 * 15 13 9 17 17 C 1.53046 * 109.49576 * 58.80419 * 15 13 9 18 18 C 1.53039 * 109.53514 * 181.31886 * 17 15 13 19 19 C 1.53622 * 109.24342 * 298.51335 * 18 17 15 20 20 N 1.46922 * 108.54469 * 54.85621 * 19 18 17 21 21 C 1.34779 * 120.63135 * 126.36880 * 20 19 18 22 22 O 1.21499 * 120.00257 * 185.54903 * 21 20 19 23 23 C 1.48281 * 119.99848 * 5.54937 * 21 20 19 24 24 C 1.47490 * 128.71225 * 186.46770 * 23 21 20 25 25 N 1.30645 * 102.71237 * 180.02562 * 24 23 21 26 26 O 1.20834 * 109.62496 * 359.97438 * 25 24 23 27 27 N 1.20898 * 115.90643 * 0.02562 * 26 25 24 28 28 C 1.46924 * 118.73997 * 306.09845 * 20 19 18 29 29 H 0.96995 * 119.99420 * 359.97438 * 1 2 3 30 30 H 1.08995 * 110.28758 * 37.01631 * 10 9 7 31 31 H 1.09004 * 110.52223 * 274.75269 * 10 9 7 32 32 H 1.08995 * 110.99942 * 279.02053 * 11 10 9 33 33 H 1.08997 * 111.03414 * 155.18028 * 11 10 9 34 34 H 1.09005 * 110.72172 * 206.13548 * 12 11 10 35 35 H 1.08998 * 110.72004 * 82.86462 * 12 11 10 36 36 H 1.08998 * 109.45908 * 301.33732 * 17 15 13 37 37 H 1.08996 * 109.45930 * 61.29995 * 17 15 13 38 38 H 1.09000 * 109.49952 * 58.58537 * 18 17 15 39 39 H 1.09004 * 109.49313 * 178.64937 * 18 17 15 40 40 H 1.09001 * 109.73696 * 295.12077 * 19 18 17 41 41 H 1.09000 * 109.66688 * 174.55303 * 19 18 17 42 42 H 1.07999 * 128.63711 * 0.02562 * 24 23 21 43 43 H 1.09001 * 109.59072 * 173.64880 * 28 20 19 44 44 H 1.09012 * 109.58690 * 294.07087 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1001 -2.5635 -0.3464 11 6 -0.2207 -4.0411 -0.7955 12 6 0.7613 -4.7439 0.1788 13 6 1.8872 -3.7018 0.3461 14 1 2.7146 -3.9395 -0.3226 15 6 2.3764 -3.6925 1.7958 16 1 3.1620 -2.9455 1.9100 17 6 1.2095 -3.3538 2.7264 18 6 1.7048 -3.3119 4.1738 19 6 2.2477 -4.6952 4.5634 20 7 3.2727 -5.0870 3.5864 21 6 4.5035 -5.4561 3.9930 22 8 5.3721 -5.6805 3.1737 23 6 4.7976 -5.5882 5.4404 24 6 6.0914 -5.8487 6.0987 25 7 5.7713 -5.8651 7.3653 26 8 4.5856 -5.6669 7.4868 27 7 3.9695 -5.5026 6.4597 28 6 2.9286 -5.0747 2.1581 29 1 -0.4849 0.8401 0.0004 30 1 -0.3761 -1.8953 -1.1621 31 1 -0.7300 -2.3789 0.5239 32 1 0.1013 -4.1626 -1.8297 33 1 -1.2373 -4.4098 -0.6590 34 1 1.1488 -5.6631 -0.2606 35 1 0.2778 -4.9460 1.1345 36 1 0.7990 -2.3812 2.4548 37 1 0.4351 -4.1146 2.6295 38 1 2.4966 -2.5685 4.2661 39 1 0.8785 -3.0471 4.8335 40 1 1.4374 -5.4243 4.5552 41 1 2.6901 -4.6487 5.5585 42 1 7.0618 -5.9905 5.6463 43 1 3.8204 -5.2787 1.5655 44 1 2.1726 -5.8342 1.9577 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963377976.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:57 Heat of formation + Delta-G solvation = 118.099836 kcal Electronic energy + Delta-G solvation = -28113.144141 eV Core-core repulsion = 24265.067881 eV Total energy + Delta-G solvation = -3848.076260 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -47.18729 -40.35959 -38.44177 -36.56278 -35.08991 -34.77470 -32.87579 -32.31387 -31.27126 -29.36999 -27.29087 -26.40858 -24.98565 -24.53596 -23.92020 -22.64541 -21.48753 -20.47590 -19.77112 -19.32189 -18.48215 -18.30471 -17.48746 -16.69574 -16.10274 -15.33343 -15.14114 -15.05233 -14.57109 -14.30266 -14.18556 -13.89136 -13.47076 -13.20142 -12.99624 -12.86871 -12.47195 -12.17570 -11.95307 -11.74966 -11.60163 -11.59019 -11.17885 -11.03343 -10.89913 -10.87885 -10.68086 -10.54598 -10.30599 -10.23851 -10.06811 -9.95319 -9.70487 -9.69969 -9.47525 -8.65478 -8.58592 -6.76512 -5.77594 -3.12300 0.47959 1.05048 2.38864 2.75057 3.15567 3.21149 3.36640 3.44212 3.45341 3.63644 4.31132 4.47015 4.49374 4.98659 5.04556 5.14681 5.17191 5.19471 5.42248 5.45375 5.59483 5.68988 5.69971 5.74893 5.80266 5.87967 5.92968 6.04514 6.10168 6.23957 6.32042 6.41742 6.50660 6.57713 6.62947 6.73439 6.97304 6.99733 7.12718 7.17299 7.51356 7.62928 7.76270 7.79118 8.14441 8.26853 9.18597 9.79703 10.50070 11.35201 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016366 B = 0.003697 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.500860 B = 7572.291649 C = 8301.624195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.001 4.001 3 Si 0.904 3.096 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.225 4.225 8 H 0.072 0.928 9 N -0.589 5.589 10 C 0.175 3.825 11 C -0.149 4.149 12 C -0.131 4.131 13 C 0.168 3.832 14 H 0.034 0.966 15 C -0.105 4.105 16 H 0.073 0.927 17 C -0.107 4.107 18 C -0.132 4.132 19 C 0.087 3.913 20 N -0.583 5.583 21 C 0.598 3.402 22 O -0.520 6.520 23 C -0.030 4.030 24 C 0.036 3.964 25 N -0.354 5.354 26 O 0.333 5.667 27 N -0.319 5.319 28 C 0.115 3.885 29 H 0.252 0.748 30 H 0.064 0.936 31 H 0.027 0.973 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.067 0.933 36 H 0.091 0.909 37 H 0.056 0.944 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.105 0.895 42 H 0.227 0.773 43 H 0.091 0.909 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.499 -12.869 10.688 17.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.198 4.198 3 Si 0.735 3.265 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.354 4.354 8 H 0.090 0.910 9 N -0.313 5.313 10 C 0.050 3.950 11 C -0.188 4.188 12 C -0.169 4.169 13 C 0.059 3.941 14 H 0.052 0.948 15 C -0.126 4.126 16 H 0.091 0.909 17 C -0.144 4.144 18 C -0.170 4.170 19 C -0.036 4.036 20 N -0.315 5.315 21 C 0.381 3.619 22 O -0.395 6.395 23 C -0.196 4.196 24 C -0.150 4.150 25 N -0.077 5.077 26 O 0.110 5.890 27 N -0.042 5.042 28 C -0.006 4.006 29 H 0.062 0.938 30 H 0.082 0.918 31 H 0.045 0.955 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.109 0.891 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.122 0.878 42 H 0.244 0.756 43 H 0.109 0.891 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.335 -12.704 11.257 17.519 hybrid contribution 0.879 0.985 -0.697 1.493 sum 5.214 -11.719 10.560 16.614 Atomic orbital electron populations 1.69939 1.04906 1.24999 1.56297 1.24883 0.95587 0.97596 1.01758 0.86166 0.79011 0.84124 0.77235 1.20488 1.21778 1.21774 1.18965 0.90253 0.82233 1.43903 0.90971 1.44528 1.07412 1.01599 1.77771 1.21421 0.85385 0.89707 0.98490 1.22993 0.97603 0.99802 0.98384 1.22705 0.97415 0.97209 0.99542 1.20883 0.94278 0.87529 0.91379 0.94846 1.21991 0.98237 0.94279 0.98107 0.90899 1.21519 0.97150 1.03915 0.91827 1.22007 1.00924 0.95342 0.98754 1.22503 0.91090 0.97270 0.92700 1.48064 1.10780 1.63400 1.09236 1.16613 0.83126 0.78677 0.83456 1.90830 1.45276 1.51247 1.52101 1.26382 0.90457 1.05913 0.96806 1.27732 1.00986 0.99274 0.87018 1.75060 0.96282 1.16029 1.20331 1.85098 1.13643 1.61205 1.29021 1.75360 1.21575 1.13510 0.93781 1.22008 1.01232 0.99178 0.78225 0.93804 0.91813 0.95467 0.92491 0.92558 0.92550 0.91441 0.89053 0.92589 0.91810 0.90935 0.90936 0.87762 0.75648 0.89063 0.90909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.73 10.69 55.49 0.59 -25.14 16 2 C 0.00 -0.03 5.47 -17.43 -0.10 -0.13 16 3 Si 0.90 21.65 29.55 -169.99 -5.02 16.63 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 7 C -0.22 -5.94 9.82 -15.06 -0.15 -6.09 16 8 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 9 N -0.59 -13.88 2.32 -162.31 -0.38 -14.26 16 10 C 0.17 3.98 5.40 -2.35 -0.01 3.97 16 11 C -0.15 -2.66 7.09 -24.58 -0.17 -2.83 16 12 C -0.13 -2.11 5.11 -24.90 -0.13 -2.24 16 13 C 0.17 3.20 2.94 -66.95 -0.20 3.00 16 14 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 15 C -0.10 -1.80 2.11 -90.50 -0.19 -1.99 16 16 H 0.07 1.46 8.02 -51.93 -0.42 1.04 16 17 C -0.11 -1.78 4.74 -26.69 -0.13 -1.91 16 18 C -0.13 -1.85 6.10 -26.39 -0.16 -2.01 16 19 C 0.09 1.07 6.22 -3.49 -0.02 1.04 16 20 N -0.58 -8.04 2.97 -173.46 -0.51 -8.55 16 21 C 0.60 8.39 7.71 -12.13 -0.09 8.30 16 22 O -0.52 -8.51 16.47 5.37 0.09 -8.42 16 23 C -0.03 -0.35 7.20 -80.07 -0.58 -0.93 16 24 C 0.04 0.33 12.63 -14.29 -0.18 0.15 16 25 N -0.35 -3.49 12.22 30.72 0.38 -3.11 16 26 O 0.33 3.34 11.65 27.27 0.32 3.66 16 27 N -0.32 -3.47 9.00 33.49 0.30 -3.17 16 28 C 0.11 1.67 5.58 -3.72 -0.02 1.65 16 29 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 30 H 0.06 1.65 7.10 -51.93 -0.37 1.28 16 31 H 0.03 0.67 8.02 -51.93 -0.42 0.25 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.07 1.02 5.52 -51.93 -0.29 0.74 16 36 H 0.09 1.93 7.55 -51.93 -0.39 1.54 16 37 H 0.06 0.87 6.09 -51.93 -0.32 0.55 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.10 1.21 4.21 -53.69 -0.23 0.99 16 42 H 0.23 1.40 8.06 -52.49 -0.42 0.98 16 43 H 0.09 1.41 7.00 -51.93 -0.36 1.04 16 44 H 0.07 0.95 6.96 -51.92 -0.36 0.59 16 LS Contribution 345.94 15.07 5.21 5.21 Total: -1.00 -29.19 345.94 -7.23 -36.41 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -6.07 Total: 0.74 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: -2.12 Total: -0.01 kcal Atomic # 7 Polarization: -54.61 SS G_CDS: 0.38 Total: -54.23 kcal Atomic # 8 Polarization: -5.16 SS G_CDS: 0.41 Total: -4.75 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.19 -7.23 -36.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963377976.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.514 kcal (2) G-P(sol) polarization free energy of solvation -29.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds