Wall clock time and date at job start Tue Mar 31 2020 12:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00231 * 2 1 4 4 H 1.48496 * 109.47316 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47193 * 299.99997 * 3 2 1 6 6 H 1.48502 * 109.46949 * 60.00142 * 3 2 1 7 7 C 1.38816 * 119.99647 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99645 * 180.02562 * 7 2 1 9 9 N 1.36928 * 120.00602 * 359.97438 * 7 2 1 10 10 C 1.47755 * 125.82005 * 16.80576 * 9 7 2 11 11 C 1.54908 * 104.84404 * 155.83001 * 10 9 7 12 12 C 1.55158 * 101.58046 * 37.09072 * 11 10 9 13 13 C 1.47017 * 125.65529 * 196.89400 * 9 7 2 14 14 H 1.09001 * 109.88482 * 300.59935 * 13 9 7 15 15 C 1.53005 * 109.88233 * 61.60781 * 13 9 7 16 16 H 1.09007 * 109.49775 * 298.71366 * 15 13 9 17 17 C 1.53046 * 109.49576 * 58.80419 * 15 13 9 18 18 C 1.53039 * 109.53514 * 181.31886 * 17 15 13 19 19 C 1.53622 * 109.24342 * 298.51335 * 18 17 15 20 20 N 1.46922 * 108.54469 * 54.85621 * 19 18 17 21 21 C 1.34779 * 120.63135 * 126.36880 * 20 19 18 22 22 O 1.21499 * 120.00257 * 185.54903 * 21 20 19 23 23 C 1.48281 * 119.99848 * 5.54937 * 21 20 19 24 24 C 1.47490 * 128.71225 * 186.46770 * 23 21 20 25 25 N 1.30645 * 102.71237 * 180.02562 * 24 23 21 26 26 O 1.20834 * 109.62496 * 359.97438 * 25 24 23 27 27 N 1.20898 * 115.90643 * 0.02562 * 26 25 24 28 28 C 1.46924 * 118.73997 * 306.09845 * 20 19 18 29 29 H 0.96995 * 119.99420 * 359.97438 * 1 2 3 30 30 H 1.08995 * 110.28758 * 37.01631 * 10 9 7 31 31 H 1.09004 * 110.52223 * 274.75269 * 10 9 7 32 32 H 1.08995 * 110.99942 * 279.02053 * 11 10 9 33 33 H 1.08997 * 111.03414 * 155.18028 * 11 10 9 34 34 H 1.09005 * 110.72172 * 206.13548 * 12 11 10 35 35 H 1.08998 * 110.72004 * 82.86462 * 12 11 10 36 36 H 1.08998 * 109.45908 * 301.33732 * 17 15 13 37 37 H 1.08996 * 109.45930 * 61.29995 * 17 15 13 38 38 H 1.09000 * 109.49952 * 58.58537 * 18 17 15 39 39 H 1.09004 * 109.49313 * 178.64937 * 18 17 15 40 40 H 1.09001 * 109.73696 * 295.12077 * 19 18 17 41 41 H 1.09000 * 109.66688 * 174.55303 * 19 18 17 42 42 H 1.07999 * 128.63711 * 0.02562 * 24 23 21 43 43 H 1.09001 * 109.59072 * 173.64880 * 28 20 19 44 44 H 1.09012 * 109.58690 * 294.07087 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1001 -2.5635 -0.3464 11 6 -0.2207 -4.0411 -0.7955 12 6 0.7613 -4.7439 0.1788 13 6 1.8872 -3.7018 0.3461 14 1 2.7146 -3.9395 -0.3226 15 6 2.3764 -3.6925 1.7958 16 1 3.1620 -2.9455 1.9100 17 6 1.2095 -3.3538 2.7264 18 6 1.7048 -3.3119 4.1738 19 6 2.2477 -4.6952 4.5634 20 7 3.2727 -5.0870 3.5864 21 6 4.5035 -5.4561 3.9930 22 8 5.3721 -5.6805 3.1737 23 6 4.7976 -5.5882 5.4404 24 6 6.0914 -5.8487 6.0987 25 7 5.7713 -5.8651 7.3653 26 8 4.5856 -5.6669 7.4868 27 7 3.9695 -5.5026 6.4597 28 6 2.9286 -5.0747 2.1581 29 1 -0.4849 0.8401 0.0004 30 1 -0.3761 -1.8953 -1.1621 31 1 -0.7300 -2.3789 0.5239 32 1 0.1013 -4.1626 -1.8297 33 1 -1.2373 -4.4098 -0.6590 34 1 1.1488 -5.6631 -0.2606 35 1 0.2778 -4.9460 1.1345 36 1 0.7990 -2.3812 2.4548 37 1 0.4351 -4.1146 2.6295 38 1 2.4966 -2.5685 4.2661 39 1 0.8785 -3.0471 4.8335 40 1 1.4374 -5.4243 4.5552 41 1 2.6901 -4.6487 5.5585 42 1 7.0618 -5.9905 5.6463 43 1 3.8204 -5.2787 1.5655 44 1 2.1726 -5.8342 1.9577 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963377976.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:56 Heat of formation + Delta-G solvation = 101.555659 kcal Electronic energy + Delta-G solvation = -28113.861550 eV Core-core repulsion = 24265.067881 eV Total energy + Delta-G solvation = -3848.793669 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -47.99752 -41.52962 -39.86557 -37.89605 -35.98533 -35.60225 -34.63117 -33.71213 -32.55960 -31.20064 -28.57682 -27.62762 -26.44936 -25.96034 -24.84236 -23.96513 -22.73353 -21.97755 -21.12601 -20.13564 -19.86259 -19.20417 -18.72694 -18.35109 -17.30837 -16.84394 -16.51094 -16.17946 -15.92503 -15.69441 -15.65003 -15.27780 -14.72341 -14.40865 -14.21449 -13.92292 -13.80518 -13.67281 -13.51162 -13.18741 -12.92216 -12.85136 -12.71707 -12.49431 -12.44046 -12.01624 -11.96653 -11.88824 -11.79848 -11.72493 -11.68989 -11.48157 -11.38999 -11.13575 -10.93409 -10.63175 -9.82079 -8.71813 -7.85656 -5.19672 -0.41325 0.29451 1.37604 1.41906 1.43388 1.51976 1.72218 2.26693 2.43248 2.48713 2.78605 3.33976 3.37448 3.65395 3.68949 3.80794 3.91661 4.01057 4.12772 4.26365 4.28995 4.34987 4.41557 4.42317 4.50565 4.58442 4.76902 4.77791 4.82322 4.86078 4.90022 5.09594 5.14739 5.24554 5.27131 5.35033 5.50636 5.51228 5.58082 5.67756 5.71629 5.84601 6.07433 6.28415 6.68231 7.14750 7.33779 7.83107 8.51546 9.26074 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.016366 B = 0.003697 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.500860 B = 7572.291649 C = 8301.624195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.053 4.053 3 Si 0.960 3.040 4 H -0.273 1.273 5 H -0.292 1.292 6 H -0.293 1.293 7 C -0.227 4.227 8 H 0.065 0.935 9 N -0.606 5.606 10 C 0.180 3.820 11 C -0.136 4.136 12 C -0.117 4.117 13 C 0.158 3.842 14 H 0.026 0.974 15 C -0.094 4.094 16 H 0.033 0.967 17 C -0.097 4.097 18 C -0.127 4.127 19 C 0.094 3.906 20 N -0.587 5.587 21 C 0.598 3.402 22 O -0.547 6.547 23 C -0.049 4.049 24 C 0.052 3.948 25 N -0.359 5.359 26 O 0.342 5.658 27 N -0.317 5.317 28 C 0.126 3.874 29 H 0.245 0.755 30 H 0.022 0.978 31 H 0.002 0.998 32 H 0.059 0.941 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.039 0.961 37 H 0.075 0.925 38 H 0.042 0.958 39 H 0.090 0.910 40 H 0.097 0.903 41 H 0.114 0.886 42 H 0.254 0.746 43 H 0.082 0.918 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.954 -15.403 12.028 20.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.247 4.247 3 Si 0.789 3.211 4 H -0.198 1.198 5 H -0.219 1.219 6 H -0.220 1.220 7 C -0.356 4.356 8 H 0.083 0.917 9 N -0.330 5.330 10 C 0.055 3.945 11 C -0.175 4.175 12 C -0.154 4.154 13 C 0.051 3.949 14 H 0.044 0.956 15 C -0.115 4.115 16 H 0.052 0.948 17 C -0.134 4.134 18 C -0.165 4.165 19 C -0.028 4.028 20 N -0.319 5.319 21 C 0.384 3.616 22 O -0.424 6.424 23 C -0.213 4.213 24 C -0.133 4.133 25 N -0.083 5.083 26 O 0.117 5.883 27 N -0.038 5.038 28 C 0.004 3.996 29 H 0.055 0.945 30 H 0.041 0.959 31 H 0.020 0.980 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.110 0.890 35 H 0.102 0.898 36 H 0.058 0.942 37 H 0.093 0.907 38 H 0.061 0.939 39 H 0.108 0.892 40 H 0.115 0.885 41 H 0.132 0.868 42 H 0.270 0.730 43 H 0.101 0.899 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 4.788 -15.262 12.600 20.362 hybrid contribution 0.785 1.772 -1.093 2.225 sum 5.574 -13.490 11.507 18.587 Atomic orbital electron populations 1.70114 1.05945 1.24949 1.57887 1.25508 0.96330 1.00245 1.02620 0.85286 0.78240 0.80805 0.76722 1.19783 1.21946 1.22034 1.19143 0.90187 0.83805 1.42502 0.91732 1.44712 1.07771 1.02406 1.78143 1.21210 0.84680 0.92546 0.96059 1.22871 0.99824 0.95927 0.98871 1.22693 0.95515 0.97114 1.00120 1.21100 0.95272 0.86338 0.92178 0.95612 1.21747 0.97318 0.95257 0.97174 0.94790 1.21358 0.97169 1.01533 0.93389 1.21945 1.00915 0.96362 0.97276 1.22558 0.91328 0.96284 0.92590 1.48111 1.11247 1.63403 1.09093 1.16808 0.82616 0.77935 0.84290 1.90813 1.45969 1.52470 1.53187 1.26096 0.91743 1.07742 0.95730 1.28174 1.01253 0.97481 0.86431 1.75098 0.96037 1.16601 1.20541 1.85099 1.13834 1.60843 1.28530 1.75292 1.21722 1.12930 0.93826 1.21813 1.01424 0.97485 0.78897 0.94523 0.95936 0.97970 0.92181 0.89852 0.89035 0.89833 0.94207 0.90680 0.93864 0.89174 0.88527 0.86837 0.72968 0.89917 0.88190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.38 10.69 21.65 0.23 -55.15 16 2 C -0.05 -2.98 5.47 84.86 0.46 -2.51 16 3 Si 0.96 46.06 29.55 68.60 2.03 48.09 16 4 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 5 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 6 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 7 C -0.23 -12.47 9.82 84.04 0.83 -11.64 16 8 H 0.06 3.56 7.83 -2.91 -0.02 3.54 16 9 N -0.61 -29.45 2.32 -667.43 -1.55 -31.01 16 10 C 0.18 8.43 5.40 86.79 0.47 8.90 16 11 C -0.14 -4.63 7.09 31.99 0.23 -4.40 16 12 C -0.12 -3.42 5.11 31.78 0.16 -3.26 16 13 C 0.16 5.98 2.94 45.34 0.13 6.11 16 14 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 15 C -0.09 -3.21 2.11 -10.71 -0.02 -3.23 16 16 H 0.03 1.41 8.02 -2.38 -0.02 1.39 16 17 C -0.10 -3.20 4.74 30.62 0.15 -3.06 16 18 C -0.13 -3.42 6.10 30.82 0.19 -3.23 16 19 C 0.09 2.07 6.22 86.51 0.54 2.60 16 20 N -0.59 -15.04 2.97 -820.99 -2.43 -17.48 16 21 C 0.60 15.80 7.71 86.92 0.67 16.47 16 22 O -0.55 -17.27 16.47 -3.71 -0.06 -17.33 16 23 C -0.05 -1.03 7.20 44.29 0.32 -0.71 16 24 C 0.05 0.83 12.63 87.31 1.10 1.93 16 25 N -0.36 -6.17 12.22 -61.41 -0.75 -6.92 16 26 O 0.34 6.03 11.65 140.86 1.64 7.67 16 27 N -0.32 -6.11 9.00 -52.05 -0.47 -6.58 16 28 C 0.13 3.42 5.58 86.36 0.48 3.90 16 29 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 30 H 0.02 1.21 7.10 -2.39 -0.02 1.19 16 31 H 0.00 0.12 8.02 -2.39 -0.02 0.10 16 32 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.09 2.13 8.14 -2.38 -0.02 2.11 16 35 H 0.08 2.20 5.52 -2.39 -0.01 2.19 16 36 H 0.04 1.74 7.55 -2.39 -0.02 1.72 16 37 H 0.07 2.17 6.09 -2.39 -0.01 2.16 16 38 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.09 2.12 8.14 -2.38 -0.02 2.10 16 40 H 0.10 1.73 8.14 -2.39 -0.02 1.72 16 41 H 0.11 2.35 4.21 -5.67 -0.02 2.32 16 42 H 0.25 2.37 8.06 -2.91 -0.02 2.35 16 43 H 0.08 2.44 7.00 -2.39 -0.02 2.42 16 44 H 0.10 2.22 6.96 -2.38 -0.02 2.20 16 Total: -1.00 -67.20 345.94 5.35 -61.86 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: 1.01 Total: 8.98 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: 5.70 Total: 7.86 kcal Atomic # 7 Polarization: -112.16 SS G_CDS: -4.97 Total: -117.13 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 1.58 Total: -9.66 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -67.20 5.35 -61.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963377976.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.411 kcal (2) G-P(sol) polarization free energy of solvation -67.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds