Wall clock time and date at job start Tue Mar 31 2020 13:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.32217 * 120.50873 * 2 1 4 4 C 1.31907 * 121.14097 * 179.97438 * 3 2 1 5 5 N 1.31760 * 122.19901 * 359.97438 * 4 3 2 6 6 C 1.32745 * 120.86823 * 359.76705 * 5 4 3 7 7 O 1.35276 * 120.61490 * 180.26446 * 6 5 4 8 8 C 1.39767 * 120.51136 * 179.97438 * 2 1 3 9 9 C 1.47539 * 120.98061 * 359.97438 * 8 2 1 10 10 O 1.21588 * 120.00006 * 89.99469 * 9 8 2 11 11 N 1.34777 * 119.99694 * 270.00501 * 9 8 2 12 12 C 1.46500 * 119.99627 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.49937 * 324.92582 * 12 11 9 14 14 C 1.53191 * 109.49943 * 84.99623 * 12 11 9 15 15 N 1.46921 * 108.77627 * 65.34883 * 14 12 11 16 16 C 1.36938 * 120.62815 * 233.58427 * 15 14 12 17 17 H 1.08006 * 120.00055 * 151.54802 * 16 15 14 18 18 C 1.38816 * 120.00384 * 331.55034 * 16 15 14 19 19 N 1.31624 * 119.99356 * 343.57477 * 18 16 15 20 20 Si 1.86793 * 120.00395 * 163.57499 * 18 16 15 21 21 H 1.48493 * 109.47484 * 90.00085 * 20 18 16 22 22 H 1.48503 * 109.47169 * 210.00310 * 20 18 16 23 23 H 1.48506 * 109.47138 * 329.99723 * 20 18 16 24 24 C 1.46928 * 118.74352 * 53.60697 * 15 14 12 25 25 C 1.53187 * 108.89143 * 306.32518 * 24 15 14 26 26 C 1.53044 * 109.52249 * 204.84565 * 12 11 9 27 27 H 1.08993 * 109.46173 * 181.38342 * 26 12 11 28 28 C 1.53013 * 109.45660 * 61.41704 * 26 12 11 29 29 H 1.09005 * 109.47072 * 270.01919 * 1 2 3 30 30 H 1.08997 * 109.47145 * 30.01605 * 1 2 3 31 31 H 1.08996 * 109.47173 * 150.02260 * 1 2 3 32 32 H 1.08006 * 118.90483 * 180.02562 * 4 3 2 33 33 H 0.96700 * 114.00022 * 270.22015 * 7 6 5 34 34 H 0.97001 * 120.00074 * 359.97438 * 11 9 8 35 35 H 1.08996 * 109.58739 * 305.55318 * 14 12 11 36 36 H 1.09003 * 109.58074 * 185.13492 * 14 12 11 37 37 H 0.96997 * 119.99488 * 180.02562 * 19 18 16 38 38 H 1.09008 * 109.58443 * 66.17860 * 24 15 14 39 39 H 1.08991 * 109.58632 * 186.45700 * 24 15 14 40 40 H 1.09004 * 109.49887 * 174.66096 * 25 24 15 41 41 H 1.09002 * 109.49521 * 294.75175 * 25 24 15 42 42 H 1.09003 * 109.46798 * 59.99649 * 28 26 12 43 43 H 1.08998 * 109.47117 * 179.97438 * 28 26 12 44 44 H 1.08996 * 109.46904 * 299.99707 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1782 1.1391 0.0000 4 6 3.4972 1.1537 0.0005 5 7 4.2115 0.0465 0.0015 6 6 3.6234 -1.1435 0.0067 7 8 4.3618 -2.2769 0.0131 8 6 2.2166 -1.2041 0.0005 9 6 1.5124 -2.5006 0.0017 10 8 1.2218 -3.0355 -1.0508 11 7 1.1912 -3.0919 1.1694 12 6 0.4924 -4.3796 1.1706 13 1 -0.2001 -4.4184 0.3298 14 6 1.5129 -5.5152 1.0454 15 7 2.3554 -5.5287 2.2490 16 6 3.7203 -5.4871 2.1457 17 1 4.3087 -5.0490 2.9384 18 6 4.3476 -6.0080 1.0223 19 7 3.6914 -6.8177 0.2183 20 14 6.1226 -5.5599 0.6515 21 1 7.0274 -6.5395 1.3049 22 1 6.3433 -5.5852 -0.8168 23 1 6.4085 -4.1986 1.1715 24 6 1.7058 -5.5881 3.5655 25 6 0.6837 -4.4515 3.6660 26 6 -0.2841 -4.5389 2.4797 27 1 -0.7836 -5.5076 2.4900 28 6 -1.3281 -3.4259 2.5918 29 1 -0.3633 0.0003 1.0277 30 1 -0.3633 0.8898 -0.5141 31 1 -0.3633 -0.8901 -0.5135 32 1 4.0088 2.1049 0.0009 33 1 4.5804 -2.6089 -0.8684 34 1 1.4233 -2.6653 2.0091 35 1 2.1352 -5.3520 0.1655 36 1 0.9904 -6.4675 0.9544 37 1 4.1299 -7.1819 -0.5665 38 1 1.1991 -6.5464 3.6801 39 1 2.4558 -5.4755 4.3484 40 1 0.1290 -4.5425 4.6000 41 1 1.2020 -3.4929 3.6422 42 1 -2.0178 -3.4887 1.7501 43 1 -1.8815 -3.5395 3.5239 44 1 -0.8288 -2.4571 2.5811 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000967940345.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:42 Heat of formation + Delta-G solvation = -5.460042 kcal Electronic energy + Delta-G solvation = -29106.058300 eV Core-core repulsion = 25252.624082 eV Total energy + Delta-G solvation = -3853.434218 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.34025 -39.45954 -37.65139 -37.43803 -34.21495 -34.13206 -32.86467 -31.85377 -30.99941 -29.35976 -28.55982 -27.33076 -25.14766 -24.01128 -22.81993 -22.30356 -21.11207 -20.86326 -18.79792 -18.71576 -18.01341 -17.67763 -16.70787 -16.22444 -15.41581 -15.01172 -14.89142 -14.36116 -14.15438 -13.95823 -13.78514 -13.65261 -13.41748 -13.27373 -13.01805 -12.85638 -12.63472 -12.61358 -12.04937 -11.96868 -11.61159 -11.42992 -11.15768 -11.12852 -10.90695 -10.65897 -10.53773 -10.38727 -10.22101 -9.92517 -9.77839 -9.63102 -9.50658 -9.37030 -9.34279 -8.46170 -8.41814 -6.61862 -5.73336 -3.16291 0.59608 0.85914 2.83859 3.26082 3.41002 3.46414 3.52334 3.55975 3.69484 3.87701 4.20977 4.55156 4.83500 4.95373 5.11751 5.17173 5.19925 5.26590 5.32416 5.34792 5.44242 5.55887 5.57860 5.74386 5.83247 5.88855 5.95869 6.10907 6.13657 6.24292 6.31616 6.40914 6.48983 6.60831 6.73249 6.78127 6.84078 6.95347 7.32659 7.48808 7.65852 7.84198 7.93081 7.95949 8.49468 8.59431 9.24906 9.88841 10.43869 11.34743 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010583 B = 0.007163 C = 0.004899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2645.236780 B = 3907.854038 C = 5713.508243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.219 3.781 3 N -0.532 5.532 4 C 0.328 3.672 5 N -0.544 5.544 6 C 0.404 3.596 7 O -0.451 6.451 8 C -0.244 4.244 9 C 0.578 3.422 10 O -0.536 6.536 11 N -0.680 5.680 12 C 0.124 3.876 13 H 0.078 0.922 14 C 0.161 3.839 15 N -0.585 5.585 16 C -0.245 4.245 17 H 0.061 0.939 18 C 0.010 3.990 19 N -0.902 5.902 20 Si 0.891 3.109 21 H -0.291 1.291 22 H -0.291 1.291 23 H -0.270 1.270 24 C 0.142 3.858 25 C -0.129 4.129 26 C -0.094 4.094 27 H 0.079 0.921 28 C -0.144 4.144 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.202 0.798 33 H 0.412 0.588 34 H 0.396 0.604 35 H 0.098 0.902 36 H 0.026 0.974 37 H 0.252 0.748 38 H 0.018 0.982 39 H 0.053 0.947 40 H 0.054 0.946 41 H 0.052 0.948 42 H 0.051 0.949 43 H 0.050 0.950 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.983 12.940 1.905 15.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.073 3.927 3 N -0.248 5.248 4 C 0.040 3.960 5 N -0.270 5.270 6 C 0.217 3.783 7 O -0.259 6.259 8 C -0.253 4.253 9 C 0.360 3.640 10 O -0.414 6.414 11 N -0.329 5.329 12 C 0.018 3.982 13 H 0.096 0.904 14 C 0.035 3.965 15 N -0.308 5.308 16 C -0.374 4.374 17 H 0.078 0.922 18 C -0.189 4.189 19 N -0.546 5.546 20 Si 0.720 3.280 21 H -0.218 1.218 22 H -0.217 1.217 23 H -0.195 1.195 24 C 0.015 3.985 25 C -0.169 4.169 26 C -0.113 4.113 27 H 0.097 0.903 28 C -0.202 4.202 29 H 0.109 0.891 30 H 0.107 0.893 31 H 0.104 0.896 32 H 0.219 0.781 33 H 0.273 0.727 34 H 0.231 0.769 35 H 0.116 0.884 36 H 0.044 0.956 37 H 0.062 0.938 38 H 0.036 0.964 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.670 13.241 1.605 15.386 hybrid contribution 1.026 -0.533 -0.266 1.187 sum -6.644 12.708 1.340 14.402 Atomic orbital electron populations 1.20884 0.87215 1.04738 1.04091 1.21750 0.97574 0.86143 0.87240 1.68249 1.10227 1.29452 1.16919 1.24882 0.86287 0.96142 0.88663 1.68100 1.42723 0.98801 1.17343 1.19576 0.85899 0.86109 0.86763 1.84813 1.72009 1.35020 1.34015 1.21953 0.95271 0.97214 1.10850 1.17359 0.78740 0.83130 0.84736 1.90810 1.54516 1.64839 1.31232 1.45790 1.57679 1.22073 1.07352 1.21893 0.94931 0.84674 0.96655 0.90446 1.21191 0.91267 0.91677 0.92407 1.43952 1.02313 1.85467 0.99062 1.19012 0.81620 1.31914 1.04877 0.92164 1.24941 0.97366 0.96901 0.99655 1.70006 1.36609 1.31908 1.16099 0.86460 0.85337 0.78925 0.77246 1.21820 1.21749 1.19516 1.20929 0.93791 0.94168 0.89598 1.22136 0.97660 1.00695 0.96370 1.21372 0.95416 0.99228 0.95279 0.90268 1.21859 0.98551 0.98760 1.01024 0.89137 0.89278 0.89581 0.78122 0.72657 0.76925 0.88396 0.95647 0.93778 0.96423 0.92873 0.92711 0.92888 0.93001 0.93073 0.93177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 9.85 36.00 0.35 -0.83 16 2 C 0.22 2.99 6.86 -81.86 -0.56 2.43 16 3 N -0.53 -6.95 10.36 -10.52 -0.11 -7.06 16 4 C 0.33 4.10 12.27 -92.09 -1.13 2.97 16 5 N -0.54 -8.38 10.45 -14.32 -0.15 -8.53 16 6 C 0.40 6.87 7.85 -16.18 -0.13 6.75 16 7 O -0.45 -8.43 13.10 -17.52 -0.23 -8.66 16 8 C -0.24 -3.94 5.67 -104.56 -0.59 -4.54 16 9 C 0.58 10.48 5.48 -12.47 -0.07 10.41 16 10 O -0.54 -11.44 16.77 5.29 0.09 -11.35 16 11 N -0.68 -11.68 4.25 -54.73 -0.23 -11.91 16 12 C 0.12 2.23 2.24 -67.81 -0.15 2.08 16 13 H 0.08 1.42 7.58 -51.93 -0.39 1.03 16 14 C 0.16 3.73 4.90 -3.71 -0.02 3.71 16 15 N -0.59 -13.83 2.91 -172.32 -0.50 -14.34 16 16 C -0.24 -6.53 9.58 -15.06 -0.14 -6.67 16 17 H 0.06 1.62 7.88 -52.48 -0.41 1.21 16 18 C 0.01 0.27 4.93 -17.43 -0.09 0.19 16 19 N -0.90 -26.03 11.19 55.49 0.62 -25.41 16 20 Si 0.89 21.75 29.58 -169.99 -5.03 16.72 16 21 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 23 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 24 C 0.14 2.78 6.50 -3.71 -0.02 2.75 16 25 C -0.13 -1.99 5.23 -26.46 -0.14 -2.12 16 26 C -0.09 -1.39 2.48 -90.41 -0.22 -1.61 16 27 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 28 C -0.14 -1.70 9.05 37.16 0.34 -1.36 16 29 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.09 1.00 7.18 -51.93 -0.37 0.62 16 32 H 0.20 1.65 8.06 -52.48 -0.42 1.23 16 33 H 0.41 6.42 9.06 45.56 0.41 6.83 16 34 H 0.40 6.47 6.63 -40.82 -0.27 6.20 16 35 H 0.10 2.66 6.07 -51.93 -0.32 2.35 16 36 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 38 H 0.02 0.35 8.14 -51.92 -0.42 -0.07 16 39 H 0.05 1.04 7.93 -51.93 -0.41 0.63 16 40 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.05 0.82 6.41 -51.93 -0.33 0.49 16 42 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.05 0.57 7.54 -51.93 -0.39 0.18 16 LS Contribution 360.61 15.07 5.43 5.43 Total: -1.00 -32.69 360.61 -8.11 -40.81 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -5.43 Total: 10.15 kcal Atomic # 6 Polarization: 16.72 SS G_CDS: -2.58 Total: 14.15 kcal Atomic # 7 Polarization: -66.87 SS G_CDS: -0.37 Total: -67.25 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: -0.14 Total: -20.01 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.03 Total: 16.72 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.69 -8.11 -40.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967940345.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.348 kcal (2) G-P(sol) polarization free energy of solvation -32.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds