Wall clock time and date at job start Tue Mar 31 2020 13:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.32217 * 120.50873 * 2 1 4 4 C 1.31907 * 121.14097 * 179.97438 * 3 2 1 5 5 N 1.31760 * 122.19901 * 359.97438 * 4 3 2 6 6 C 1.32745 * 120.86823 * 359.76705 * 5 4 3 7 7 O 1.35276 * 120.61490 * 180.26446 * 6 5 4 8 8 C 1.39767 * 120.51136 * 179.97438 * 2 1 3 9 9 C 1.47539 * 120.98061 * 359.97438 * 8 2 1 10 10 O 1.21588 * 120.00006 * 89.99469 * 9 8 2 11 11 N 1.34777 * 119.99694 * 270.00501 * 9 8 2 12 12 C 1.46500 * 119.99627 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.49937 * 324.92582 * 12 11 9 14 14 C 1.53191 * 109.49943 * 84.99623 * 12 11 9 15 15 N 1.46921 * 108.77627 * 65.34883 * 14 12 11 16 16 C 1.36938 * 120.62815 * 233.58427 * 15 14 12 17 17 H 1.08006 * 120.00055 * 151.54802 * 16 15 14 18 18 C 1.38816 * 120.00384 * 331.55034 * 16 15 14 19 19 N 1.31624 * 119.99356 * 343.57477 * 18 16 15 20 20 Si 1.86793 * 120.00395 * 163.57499 * 18 16 15 21 21 H 1.48493 * 109.47484 * 90.00085 * 20 18 16 22 22 H 1.48503 * 109.47169 * 210.00310 * 20 18 16 23 23 H 1.48506 * 109.47138 * 329.99723 * 20 18 16 24 24 C 1.46928 * 118.74352 * 53.60697 * 15 14 12 25 25 C 1.53187 * 108.89143 * 306.32518 * 24 15 14 26 26 C 1.53044 * 109.52249 * 204.84565 * 12 11 9 27 27 H 1.08993 * 109.46173 * 181.38342 * 26 12 11 28 28 C 1.53013 * 109.45660 * 61.41704 * 26 12 11 29 29 H 1.09005 * 109.47072 * 270.01919 * 1 2 3 30 30 H 1.08997 * 109.47145 * 30.01605 * 1 2 3 31 31 H 1.08996 * 109.47173 * 150.02260 * 1 2 3 32 32 H 1.08006 * 118.90483 * 180.02562 * 4 3 2 33 33 H 0.96700 * 114.00022 * 270.22015 * 7 6 5 34 34 H 0.97001 * 120.00074 * 359.97438 * 11 9 8 35 35 H 1.08996 * 109.58739 * 305.55318 * 14 12 11 36 36 H 1.09003 * 109.58074 * 185.13492 * 14 12 11 37 37 H 0.96997 * 119.99488 * 180.02562 * 19 18 16 38 38 H 1.09008 * 109.58443 * 66.17860 * 24 15 14 39 39 H 1.08991 * 109.58632 * 186.45700 * 24 15 14 40 40 H 1.09004 * 109.49887 * 174.66096 * 25 24 15 41 41 H 1.09002 * 109.49521 * 294.75175 * 25 24 15 42 42 H 1.09003 * 109.46798 * 59.99649 * 28 26 12 43 43 H 1.08998 * 109.47117 * 179.97438 * 28 26 12 44 44 H 1.08996 * 109.46904 * 299.99707 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1782 1.1391 0.0000 4 6 3.4972 1.1537 0.0005 5 7 4.2115 0.0465 0.0015 6 6 3.6234 -1.1435 0.0067 7 8 4.3618 -2.2769 0.0131 8 6 2.2166 -1.2041 0.0005 9 6 1.5124 -2.5006 0.0017 10 8 1.2218 -3.0355 -1.0508 11 7 1.1912 -3.0919 1.1694 12 6 0.4924 -4.3796 1.1706 13 1 -0.2001 -4.4184 0.3298 14 6 1.5129 -5.5152 1.0454 15 7 2.3554 -5.5287 2.2490 16 6 3.7203 -5.4871 2.1457 17 1 4.3087 -5.0490 2.9384 18 6 4.3476 -6.0080 1.0223 19 7 3.6914 -6.8177 0.2183 20 14 6.1226 -5.5599 0.6515 21 1 7.0274 -6.5395 1.3049 22 1 6.3433 -5.5852 -0.8168 23 1 6.4085 -4.1986 1.1715 24 6 1.7058 -5.5881 3.5655 25 6 0.6837 -4.4515 3.6660 26 6 -0.2841 -4.5389 2.4797 27 1 -0.7836 -5.5076 2.4900 28 6 -1.3281 -3.4259 2.5918 29 1 -0.3633 0.0003 1.0277 30 1 -0.3633 0.8898 -0.5141 31 1 -0.3633 -0.8901 -0.5135 32 1 4.0088 2.1049 0.0009 33 1 4.5804 -2.6089 -0.8684 34 1 1.4233 -2.6653 2.0091 35 1 2.1352 -5.3520 0.1655 36 1 0.9904 -6.4675 0.9544 37 1 4.1299 -7.1819 -0.5665 38 1 1.1991 -6.5464 3.6801 39 1 2.4558 -5.4755 4.3484 40 1 0.1290 -4.5425 4.6000 41 1 1.2020 -3.4929 3.6422 42 1 -2.0178 -3.4887 1.7501 43 1 -1.8815 -3.5395 3.5239 44 1 -0.8288 -2.4571 2.5811 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000967940345.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:41 Heat of formation + Delta-G solvation = -30.805833 kcal Electronic energy + Delta-G solvation = -29107.157376 eV Core-core repulsion = 25252.624082 eV Total energy + Delta-G solvation = -3854.533294 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.51143 -40.89158 -39.07498 -38.82654 -35.90526 -35.31957 -34.34154 -33.09919 -32.72970 -30.82843 -29.65113 -28.87980 -26.42145 -25.67359 -23.98820 -23.78392 -22.73331 -22.17968 -20.29724 -20.03074 -19.18868 -19.00653 -18.60178 -17.40086 -16.91087 -16.70800 -16.22484 -15.76191 -15.67113 -15.42938 -15.25895 -14.97865 -14.75056 -14.53689 -14.37490 -14.08927 -13.85148 -13.69209 -13.57483 -13.13191 -13.10487 -12.97775 -12.72143 -12.58789 -12.48688 -12.40473 -12.21097 -11.91791 -11.56052 -11.46581 -11.32516 -11.06820 -10.99370 -10.62137 -10.52318 -10.50032 -10.00161 -8.59571 -7.82427 -5.26714 -0.54107 -0.27300 1.39592 1.42304 1.44473 1.57390 2.15034 2.20542 2.51152 2.53094 2.91277 3.15272 3.34452 3.55683 3.71271 3.79369 3.89628 3.99570 4.09921 4.15039 4.23624 4.52536 4.58802 4.65142 4.69774 4.71113 4.82843 4.88628 4.92115 4.97354 5.10357 5.17654 5.18743 5.25432 5.27645 5.48497 5.51456 5.61734 5.65951 5.69795 5.74852 6.22746 6.43166 6.52952 6.84469 7.18117 7.19588 7.91666 8.41352 9.22429 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010583 B = 0.007163 C = 0.004899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2645.236780 B = 3907.854038 C = 5713.508243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.229 3.771 3 N -0.528 5.528 4 C 0.336 3.664 5 N -0.560 5.560 6 C 0.389 3.611 7 O -0.477 6.477 8 C -0.263 4.263 9 C 0.582 3.418 10 O -0.576 6.576 11 N -0.671 5.671 12 C 0.135 3.865 13 H 0.073 0.927 14 C 0.170 3.830 15 N -0.598 5.598 16 C -0.241 4.241 17 H 0.057 0.943 18 C -0.039 4.039 19 N -0.933 5.933 20 Si 0.946 3.054 21 H -0.293 1.293 22 H -0.294 1.294 23 H -0.267 1.267 24 C 0.134 3.866 25 C -0.116 4.116 26 C -0.087 4.087 27 H 0.079 0.921 28 C -0.135 4.135 29 H 0.114 0.886 30 H 0.109 0.891 31 H 0.074 0.926 32 H 0.246 0.754 33 H 0.417 0.583 34 H 0.402 0.598 35 H 0.052 0.948 36 H -0.001 1.001 37 H 0.244 0.756 38 H 0.015 0.985 39 H 0.051 0.949 40 H 0.091 0.909 41 H 0.055 0.945 42 H 0.056 0.944 43 H 0.074 0.926 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.464 15.891 3.616 18.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.083 3.917 3 N -0.244 5.244 4 C 0.050 3.950 5 N -0.286 5.286 6 C 0.202 3.798 7 O -0.286 6.286 8 C -0.272 4.272 9 C 0.366 3.634 10 O -0.456 6.456 11 N -0.319 5.319 12 C 0.030 3.970 13 H 0.091 0.909 14 C 0.043 3.957 15 N -0.321 5.321 16 C -0.372 4.372 17 H 0.075 0.925 18 C -0.234 4.234 19 N -0.580 5.580 20 Si 0.776 3.224 21 H -0.221 1.221 22 H -0.221 1.221 23 H -0.192 1.192 24 C 0.009 3.991 25 C -0.155 4.155 26 C -0.106 4.106 27 H 0.098 0.902 28 C -0.193 4.193 29 H 0.133 0.867 30 H 0.128 0.872 31 H 0.093 0.907 32 H 0.262 0.738 33 H 0.279 0.721 34 H 0.239 0.761 35 H 0.071 0.929 36 H 0.017 0.983 37 H 0.054 0.946 38 H 0.033 0.967 39 H 0.069 0.931 40 H 0.109 0.891 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.093 0.907 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.161 16.228 3.365 18.936 hybrid contribution 1.486 -1.418 -0.761 2.191 sum -7.675 14.809 2.604 16.882 Atomic orbital electron populations 1.21002 0.84892 1.05135 1.05678 1.22227 0.98997 0.85257 0.85233 1.68415 1.10406 1.28623 1.16938 1.25821 0.86340 0.96749 0.86118 1.68154 1.43248 0.98830 1.18365 1.19721 0.86166 0.86215 0.87725 1.84751 1.72598 1.36329 1.34957 1.21796 0.94924 0.97052 1.13454 1.17635 0.77920 0.83615 0.84188 1.90784 1.56090 1.66131 1.32593 1.45688 1.57285 1.21425 1.07509 1.21601 0.93477 0.83098 0.98868 0.90896 1.20901 0.91376 0.92613 0.90773 1.44120 1.01640 1.85655 1.00731 1.19225 0.83239 1.30352 1.04350 0.92505 1.25517 1.00409 0.97454 1.00011 1.70159 1.37781 1.33579 1.16457 0.85586 0.81751 0.78460 0.76643 1.22071 1.22074 1.19153 1.21139 0.94692 0.95971 0.87277 1.22008 0.96700 0.98563 0.98226 1.21337 0.95710 1.00904 0.92690 0.90244 1.21775 0.97590 0.97339 1.02558 0.86738 0.87230 0.90745 0.73815 0.72052 0.76140 0.92944 0.98307 0.94642 0.96728 0.93085 0.89100 0.92620 0.92468 0.90704 0.92453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.01 9.85 71.23 0.70 -1.31 16 2 C 0.23 5.77 6.86 42.87 0.29 6.06 16 3 N -0.53 -12.19 10.36 -187.20 -1.94 -14.13 16 4 C 0.34 7.45 12.27 180.86 2.22 9.67 16 5 N -0.56 -16.53 10.45 -312.04 -3.26 -19.79 16 6 C 0.39 13.20 7.85 85.18 0.67 13.87 16 7 O -0.48 -18.42 13.10 -85.61 -1.12 -19.54 16 8 C -0.26 -8.37 5.67 -19.82 -0.11 -8.49 16 9 C 0.58 21.32 5.48 86.70 0.47 21.79 16 10 O -0.58 -25.43 16.77 -3.99 -0.07 -25.50 16 11 N -0.67 -22.74 4.25 -445.32 -1.89 -24.63 16 12 C 0.14 4.88 2.24 45.07 0.10 4.98 16 13 H 0.07 2.71 7.58 -2.39 -0.02 2.69 16 14 C 0.17 8.19 4.90 86.36 0.42 8.62 16 15 N -0.60 -28.83 2.91 -699.11 -2.04 -30.86 16 16 C -0.24 -13.16 9.58 84.03 0.81 -12.36 16 17 H 0.06 3.10 7.88 -2.91 -0.02 3.08 16 18 C -0.04 -2.19 4.93 84.86 0.42 -1.77 16 19 N -0.93 -56.48 11.19 21.65 0.24 -56.24 16 20 Si 0.95 46.43 29.58 68.60 2.03 48.46 16 21 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 22 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 23 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 24 C 0.13 5.16 6.50 86.36 0.56 5.72 16 25 C -0.12 -3.24 5.23 30.77 0.16 -3.08 16 26 C -0.09 -2.39 2.48 -10.66 -0.03 -2.41 16 27 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 28 C -0.14 -2.64 9.05 71.99 0.65 -1.99 16 29 H 0.11 1.58 8.14 -2.38 -0.02 1.56 16 30 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.07 1.58 7.18 -2.39 -0.02 1.57 16 32 H 0.25 3.00 8.06 -2.91 -0.02 2.97 16 33 H 0.42 13.91 9.06 -74.06 -0.67 13.24 16 34 H 0.40 12.57 6.63 -92.71 -0.61 11.96 16 35 H 0.05 3.02 6.07 -2.39 -0.01 3.00 16 36 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 37 H 0.24 14.59 8.31 -92.71 -0.77 13.82 16 38 H 0.01 0.58 8.14 -2.38 -0.02 0.56 16 39 H 0.05 1.95 7.93 -2.39 -0.02 1.94 16 40 H 0.09 1.97 8.14 -2.38 -0.02 1.96 16 41 H 0.06 1.55 6.41 -2.39 -0.02 1.54 16 42 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.06 1.05 7.54 -2.39 -0.02 1.03 16 Total: -1.00 -74.62 360.61 -0.94 -75.57 By element: Atomic # 1 Polarization: 27.58 SS G_CDS: -0.24 Total: 27.34 kcal Atomic # 6 Polarization: 31.98 SS G_CDS: 7.34 Total: 39.32 kcal Atomic # 7 Polarization: -136.76 SS G_CDS: -8.89 Total: -145.65 kcal Atomic # 8 Polarization: -43.85 SS G_CDS: -1.19 Total: -45.04 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Total: -74.62 -0.94 -75.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967940345.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.760 kcal (2) G-P(sol) polarization free energy of solvation -74.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds