Wall clock time and date at job start Tue Mar 31 2020 13:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.32221 * 120.50575 * 2 1 4 4 C 1.31911 * 121.13991 * 179.72626 * 3 2 1 5 5 N 1.31753 * 122.19601 * 359.97438 * 4 3 2 6 6 C 1.32746 * 120.87075 * 0.02562 * 5 4 3 7 7 O 1.35279 * 120.61176 * 180.02562 * 6 5 4 8 8 C 1.39761 * 120.51213 * 179.71999 * 2 1 3 9 9 C 1.47538 * 120.97956 * 0.25648 * 8 2 1 10 10 O 1.21588 * 119.99932 * 89.99780 * 9 8 2 11 11 N 1.34779 * 119.99677 * 270.00209 * 9 8 2 12 12 C 1.46504 * 119.99682 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.49954 * 34.99602 * 12 11 9 14 14 C 1.53192 * 109.49369 * 274.93007 * 12 11 9 15 15 N 1.46932 * 108.76818 * 185.45019 * 14 12 11 16 16 C 1.36940 * 120.60469 * 233.57746 * 15 14 12 17 17 H 1.08004 * 119.99944 * 27.65682 * 16 15 14 18 18 C 1.38810 * 120.00236 * 207.66440 * 16 15 14 19 19 N 1.31612 * 120.00196 * 17.34879 * 18 16 15 20 20 Si 1.86808 * 119.99988 * 197.35831 * 18 16 15 21 21 H 1.48502 * 109.47187 * 59.99321 * 20 18 16 22 22 H 1.48497 * 109.47127 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.46911 * 299.99800 * 20 18 16 24 24 C 1.46923 * 118.77148 * 53.55445 * 15 14 12 25 25 C 1.53195 * 108.77338 * 306.41432 * 24 15 14 26 26 C 1.53041 * 109.49567 * 155.06238 * 12 11 9 27 27 H 1.08997 * 109.46062 * 61.29267 * 26 12 11 28 28 C 1.53003 * 109.45882 * 301.33083 * 26 12 11 29 29 H 1.08999 * 109.47346 * 89.99966 * 1 2 3 30 30 H 1.08997 * 109.47269 * 210.00197 * 1 2 3 31 31 H 1.08999 * 109.47416 * 330.00288 * 1 2 3 32 32 H 1.07995 * 118.89781 * 180.02562 * 4 3 2 33 33 H 0.96701 * 114.00314 * 89.99800 * 7 6 5 34 34 H 0.96993 * 119.99939 * 359.97438 * 11 9 8 35 35 H 1.08996 * 109.58791 * 305.19862 * 14 12 11 36 36 H 1.08991 * 109.58903 * 65.63045 * 14 12 11 37 37 H 0.97000 * 120.00281 * 179.97438 * 19 18 16 38 38 H 1.08993 * 109.59111 * 186.62351 * 24 15 14 39 39 H 1.09002 * 109.69969 * 66.26492 * 24 15 14 40 40 H 1.08994 * 109.49730 * 294.68167 * 25 24 15 41 41 H 1.08994 * 109.49891 * 174.58070 * 25 24 15 42 42 H 1.09000 * 109.46646 * 60.00160 * 28 26 12 43 43 H 1.09000 * 109.47118 * 180.02562 * 28 26 12 44 44 H 1.09000 * 109.47269 * 300.00787 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1782 1.1392 0.0000 4 6 3.4972 1.1538 0.0054 5 7 4.2115 0.0467 0.0115 6 6 3.6233 -1.1434 0.0120 7 8 4.3618 -2.2767 0.0188 8 6 2.2166 -1.2041 0.0059 9 6 1.5124 -2.5006 0.0066 10 8 1.2263 -3.0375 -1.0461 11 7 1.1863 -3.0896 1.1741 12 6 0.4875 -4.3773 1.1748 13 1 0.8354 -4.9804 0.3361 14 6 -1.0203 -4.1408 1.0439 15 7 -1.7143 -5.4289 1.1776 16 6 -2.5978 -5.8478 0.2188 17 1 -2.4841 -5.5153 -0.8025 18 6 -3.6396 -6.6994 0.5595 19 7 -3.9926 -6.8360 1.8201 20 14 -4.5406 -7.6519 -0.7711 21 1 -3.5805 -8.5286 -1.4886 22 1 -5.6025 -8.4845 -0.1511 23 1 -5.1547 -6.7002 -1.7315 24 6 -1.4423 -6.2594 2.3587 25 6 0.0704 -6.4722 2.4741 26 6 0.7732 -5.1127 2.4861 27 1 0.4034 -4.5201 3.3229 28 6 2.2817 -5.3202 2.6360 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 4.0086 2.1050 0.0056 33 1 4.5723 -2.6038 0.9042 34 1 1.4148 -2.6614 2.0138 35 1 -1.3536 -3.4634 1.8301 36 1 -1.2388 -3.7070 0.0681 37 1 -4.7209 -7.4308 2.0581 38 1 -1.9397 -7.2232 2.2502 39 1 -1.8100 -5.7572 3.2536 40 1 0.4216 -7.0558 1.6232 41 1 0.2933 -7.0051 3.3983 42 1 2.7823 -4.3520 2.6457 43 1 2.4854 -5.8444 3.5697 44 1 2.6520 -5.9122 1.7990 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000967940346.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:45 Heat of formation + Delta-G solvation = -8.814809 kcal Electronic energy + Delta-G solvation = -27861.396216 eV Core-core repulsion = 24007.816524 eV Total energy + Delta-G solvation = -3853.579692 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.67182 -39.64979 -38.09713 -37.67667 -34.58095 -34.47107 -33.13297 -32.15775 -31.14593 -29.36250 -28.64537 -27.37110 -25.42566 -24.08924 -23.15037 -22.46588 -21.16462 -20.59447 -19.59437 -19.23845 -18.34865 -17.62568 -16.90888 -16.63546 -15.88377 -15.36033 -14.85397 -14.56641 -14.41328 -14.32508 -13.79866 -13.63777 -13.52537 -13.38797 -13.24482 -13.10313 -12.88166 -12.53867 -12.33552 -12.10883 -11.73654 -11.57388 -11.54236 -11.09329 -10.81072 -10.73819 -10.67318 -10.32779 -10.22999 -10.15737 -9.92907 -9.77618 -9.72416 -9.66624 -9.56128 -8.93490 -8.43834 -6.71763 -5.81314 -3.23544 0.28086 0.55933 2.46980 2.89671 3.12219 3.25275 3.39856 3.44671 3.47845 3.64694 3.91395 4.44571 4.54679 4.63708 4.83875 4.99189 5.05436 5.19980 5.31187 5.33296 5.40637 5.41336 5.54688 5.63458 5.80191 5.86813 5.93038 5.97106 6.08221 6.14045 6.20660 6.45991 6.46788 6.54947 6.58313 6.65384 6.75723 6.89591 6.95405 7.30794 7.52684 7.60997 7.63800 7.80446 8.19859 8.42797 9.19095 9.81209 10.36183 11.27392 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.018215 B = 0.003582 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.822631 B = 7814.097711 C = 8608.010210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.229 3.771 3 N -0.526 5.526 4 C 0.332 3.668 5 N -0.544 5.544 6 C 0.396 3.604 7 O -0.466 6.466 8 C -0.246 4.246 9 C 0.573 3.427 10 O -0.512 6.512 11 N -0.711 5.711 12 C 0.131 3.869 13 H 0.089 0.911 14 C 0.142 3.858 15 N -0.586 5.586 16 C -0.253 4.253 17 H 0.067 0.933 18 C 0.004 3.996 19 N -0.903 5.903 20 Si 0.903 3.097 21 H -0.283 1.283 22 H -0.290 1.290 23 H -0.282 1.282 24 C 0.167 3.833 25 C -0.134 4.134 26 C -0.091 4.091 27 H 0.067 0.933 28 C -0.144 4.144 29 H 0.097 0.903 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.206 0.794 33 H 0.410 0.590 34 H 0.394 0.606 35 H 0.018 0.982 36 H 0.058 0.942 37 H 0.254 0.746 38 H 0.090 0.910 39 H 0.019 0.981 40 H 0.058 0.942 41 H 0.055 0.945 42 H 0.044 0.956 43 H 0.052 0.948 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.772 12.253 3.917 19.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.084 3.916 3 N -0.242 5.242 4 C 0.045 3.955 5 N -0.269 5.269 6 C 0.208 3.792 7 O -0.273 6.273 8 C -0.256 4.256 9 C 0.355 3.645 10 O -0.386 6.386 11 N -0.361 5.361 12 C 0.026 3.974 13 H 0.107 0.893 14 C 0.014 3.986 15 N -0.309 5.309 16 C -0.383 4.383 17 H 0.084 0.916 18 C -0.194 4.194 19 N -0.548 5.548 20 Si 0.732 3.268 21 H -0.209 1.209 22 H -0.216 1.216 23 H -0.208 1.208 24 C 0.041 3.959 25 C -0.173 4.173 26 C -0.110 4.110 27 H 0.086 0.914 28 C -0.201 4.201 29 H 0.115 0.885 30 H 0.106 0.894 31 H 0.111 0.889 32 H 0.222 0.778 33 H 0.270 0.730 34 H 0.227 0.773 35 H 0.036 0.964 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.108 0.892 39 H 0.037 0.963 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.063 0.937 43 H 0.071 0.929 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 14.840 12.542 2.611 19.605 hybrid contribution -0.492 -1.106 0.221 1.230 sum 14.348 11.436 2.833 18.565 Atomic orbital electron populations 1.20971 0.86582 1.04932 1.04948 1.21885 0.97913 0.85904 0.85945 1.68320 1.10135 1.29433 1.16288 1.24967 0.86316 0.96080 0.88152 1.68048 1.42651 0.98678 1.17509 1.19378 0.85548 0.85892 0.88363 1.84712 1.72548 1.35974 1.34091 1.21870 0.95064 0.97201 1.11426 1.17497 0.78902 0.83339 0.84753 1.90880 1.53072 1.63580 1.31093 1.46149 1.59169 1.23500 1.07316 1.21886 0.94697 0.82083 0.98708 0.89287 1.21188 0.88752 0.89341 0.99353 1.43971 1.47663 1.15566 1.23675 1.19178 1.04121 1.26107 0.88857 0.91575 1.25004 0.96453 1.01858 0.96097 1.70020 1.29558 1.39377 1.15827 0.86364 0.79050 0.80082 0.81272 1.20948 1.21636 1.20816 1.20846 0.89011 0.97605 0.88396 1.22253 1.00026 0.94450 1.00610 1.21310 0.94957 0.98216 0.96504 0.91429 1.21855 0.96091 1.00624 1.01544 0.88479 0.89383 0.88925 0.77803 0.72954 0.77256 0.96433 0.92298 0.93576 0.89199 0.96302 0.92341 0.92651 0.93733 0.92857 0.92739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.21 9.86 36.00 0.35 -0.85 16 2 C 0.23 2.66 6.86 -81.86 -0.56 2.10 16 3 N -0.53 -5.69 10.36 -10.53 -0.11 -5.80 16 4 C 0.33 3.14 12.27 -92.09 -1.13 2.01 16 5 N -0.54 -6.10 10.45 -14.32 -0.15 -6.25 16 6 C 0.40 4.72 7.85 -16.19 -0.13 4.59 16 7 O -0.47 -5.07 13.10 -17.53 -0.23 -5.30 16 8 C -0.25 -3.10 5.67 -104.57 -0.59 -3.69 16 9 C 0.57 8.46 5.48 -12.47 -0.07 8.40 16 10 O -0.51 -10.06 16.77 5.29 0.09 -9.97 16 11 N -0.71 -9.18 4.37 -54.73 -0.24 -9.42 16 12 C 0.13 2.16 2.06 -67.81 -0.14 2.02 16 13 H 0.09 1.73 7.58 -51.93 -0.39 1.34 16 14 C 0.14 2.89 6.09 -3.71 -0.02 2.86 16 15 N -0.59 -14.29 3.00 -172.32 -0.52 -14.81 16 16 C -0.25 -6.93 9.58 -15.06 -0.14 -7.08 16 17 H 0.07 1.83 7.89 -52.48 -0.41 1.41 16 18 C 0.00 0.12 4.91 -17.43 -0.09 0.04 16 19 N -0.90 -25.69 11.19 55.49 0.62 -25.07 16 20 Si 0.90 21.72 29.59 -169.99 -5.03 16.69 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 C 0.17 3.78 5.31 -3.71 -0.02 3.76 16 25 C -0.13 -2.34 5.36 -26.61 -0.14 -2.49 16 26 C -0.09 -1.33 2.27 -90.57 -0.21 -1.53 16 27 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 28 C -0.14 -1.65 9.02 37.16 0.34 -1.31 16 29 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.09 0.97 7.17 -51.93 -0.37 0.60 16 31 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.21 1.10 8.06 -52.49 -0.42 0.68 16 33 H 0.41 2.29 9.06 45.56 0.41 2.71 16 34 H 0.39 3.91 8.29 -40.82 -0.34 3.57 16 35 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.06 1.29 7.93 -51.93 -0.41 0.88 16 37 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 38 H 0.09 2.31 6.03 -51.93 -0.31 2.00 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.04 0.41 7.36 -51.93 -0.38 0.03 16 43 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 363.68 15.07 5.48 5.48 Total: -1.00 -33.92 363.68 -8.21 -42.13 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -5.58 Total: 3.48 kcal Atomic # 6 Polarization: 11.37 SS G_CDS: -2.55 Total: 8.82 kcal Atomic # 7 Polarization: -60.94 SS G_CDS: -0.39 Total: -61.33 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: -0.14 Total: -15.27 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.03 Total: 16.69 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.92 -8.21 -42.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967940346.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.311 kcal (2) G-P(sol) polarization free energy of solvation -33.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds