Wall clock time and date at job start Tue Mar 31 2020 13:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.32221 * 120.50575 * 2 1 4 4 C 1.31911 * 121.13991 * 179.72626 * 3 2 1 5 5 N 1.31753 * 122.19601 * 359.97438 * 4 3 2 6 6 C 1.32746 * 120.87075 * 0.02562 * 5 4 3 7 7 O 1.35279 * 120.61176 * 180.02562 * 6 5 4 8 8 C 1.39761 * 120.51213 * 179.71999 * 2 1 3 9 9 C 1.47538 * 120.97956 * 0.25648 * 8 2 1 10 10 O 1.21588 * 119.99932 * 89.99780 * 9 8 2 11 11 N 1.34779 * 119.99677 * 270.00209 * 9 8 2 12 12 C 1.46504 * 119.99682 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.49954 * 34.99602 * 12 11 9 14 14 C 1.53192 * 109.49369 * 274.93007 * 12 11 9 15 15 N 1.46932 * 108.76818 * 185.45019 * 14 12 11 16 16 C 1.36940 * 120.60469 * 233.57746 * 15 14 12 17 17 H 1.08004 * 119.99944 * 27.65682 * 16 15 14 18 18 C 1.38810 * 120.00236 * 207.66440 * 16 15 14 19 19 N 1.31612 * 120.00196 * 17.34879 * 18 16 15 20 20 Si 1.86808 * 119.99988 * 197.35831 * 18 16 15 21 21 H 1.48502 * 109.47187 * 59.99321 * 20 18 16 22 22 H 1.48497 * 109.47127 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.46911 * 299.99800 * 20 18 16 24 24 C 1.46923 * 118.77148 * 53.55445 * 15 14 12 25 25 C 1.53195 * 108.77338 * 306.41432 * 24 15 14 26 26 C 1.53041 * 109.49567 * 155.06238 * 12 11 9 27 27 H 1.08997 * 109.46062 * 61.29267 * 26 12 11 28 28 C 1.53003 * 109.45882 * 301.33083 * 26 12 11 29 29 H 1.08999 * 109.47346 * 89.99966 * 1 2 3 30 30 H 1.08997 * 109.47269 * 210.00197 * 1 2 3 31 31 H 1.08999 * 109.47416 * 330.00288 * 1 2 3 32 32 H 1.07995 * 118.89781 * 180.02562 * 4 3 2 33 33 H 0.96701 * 114.00314 * 89.99800 * 7 6 5 34 34 H 0.96993 * 119.99939 * 359.97438 * 11 9 8 35 35 H 1.08996 * 109.58791 * 305.19862 * 14 12 11 36 36 H 1.08991 * 109.58903 * 65.63045 * 14 12 11 37 37 H 0.97000 * 120.00281 * 179.97438 * 19 18 16 38 38 H 1.08993 * 109.59111 * 186.62351 * 24 15 14 39 39 H 1.09002 * 109.69969 * 66.26492 * 24 15 14 40 40 H 1.08994 * 109.49730 * 294.68167 * 25 24 15 41 41 H 1.08994 * 109.49891 * 174.58070 * 25 24 15 42 42 H 1.09000 * 109.46646 * 60.00160 * 28 26 12 43 43 H 1.09000 * 109.47118 * 180.02562 * 28 26 12 44 44 H 1.09000 * 109.47269 * 300.00787 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1782 1.1392 0.0000 4 6 3.4972 1.1538 0.0054 5 7 4.2115 0.0467 0.0115 6 6 3.6233 -1.1434 0.0120 7 8 4.3618 -2.2767 0.0188 8 6 2.2166 -1.2041 0.0059 9 6 1.5124 -2.5006 0.0066 10 8 1.2263 -3.0375 -1.0461 11 7 1.1863 -3.0896 1.1741 12 6 0.4875 -4.3773 1.1748 13 1 0.8354 -4.9804 0.3361 14 6 -1.0203 -4.1408 1.0439 15 7 -1.7143 -5.4289 1.1776 16 6 -2.5978 -5.8478 0.2188 17 1 -2.4841 -5.5153 -0.8025 18 6 -3.6396 -6.6994 0.5595 19 7 -3.9926 -6.8360 1.8201 20 14 -4.5406 -7.6519 -0.7711 21 1 -3.5805 -8.5286 -1.4886 22 1 -5.6025 -8.4845 -0.1511 23 1 -5.1547 -6.7002 -1.7315 24 6 -1.4423 -6.2594 2.3587 25 6 0.0704 -6.4722 2.4741 26 6 0.7732 -5.1127 2.4861 27 1 0.4034 -4.5201 3.3229 28 6 2.2817 -5.3202 2.6360 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3634 -0.8899 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 4.0086 2.1050 0.0056 33 1 4.5723 -2.6038 0.9042 34 1 1.4148 -2.6614 2.0138 35 1 -1.3536 -3.4634 1.8301 36 1 -1.2388 -3.7070 0.0681 37 1 -4.7209 -7.4308 2.0581 38 1 -1.9397 -7.2232 2.2502 39 1 -1.8100 -5.7572 3.2536 40 1 0.4216 -7.0558 1.6232 41 1 0.2933 -7.0051 3.3983 42 1 2.7823 -4.3520 2.6457 43 1 2.4854 -5.8444 3.5697 44 1 2.6520 -5.9122 1.7990 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000967940346.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:44 Heat of formation + Delta-G solvation = -35.532201 kcal Electronic energy + Delta-G solvation = -27862.554769 eV Core-core repulsion = 24007.816524 eV Total energy + Delta-G solvation = -3854.738245 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.56529 -40.90365 -39.18018 -38.88395 -36.21700 -35.37351 -34.51578 -33.10958 -33.00681 -30.68253 -29.70632 -28.89470 -26.48177 -25.75417 -24.06214 -23.83987 -22.71343 -21.84919 -21.09369 -20.05316 -19.23070 -18.80748 -18.70565 -17.60173 -17.16266 -16.76977 -16.21882 -15.80099 -15.77047 -15.40829 -15.35027 -15.12256 -14.86446 -14.52332 -14.42439 -14.16760 -13.93637 -13.74494 -13.58606 -13.20005 -13.15877 -13.12383 -12.74486 -12.65558 -12.48785 -12.32457 -12.03169 -11.95760 -11.66175 -11.50002 -11.49157 -11.27706 -11.00561 -10.69172 -10.60509 -10.53485 -10.19436 -8.69636 -7.90667 -5.35400 -0.56062 -0.29320 1.30755 1.44778 1.46746 1.53900 1.91485 2.16225 2.41486 2.50124 2.86899 3.11082 3.23920 3.45538 3.73232 3.76253 3.79268 4.01187 4.06537 4.11753 4.20577 4.44423 4.49373 4.51956 4.61358 4.66518 4.76555 4.88325 4.93317 4.95795 5.04077 5.08399 5.15285 5.15573 5.21922 5.41189 5.46654 5.54478 5.63177 5.64548 5.78050 6.32960 6.36368 6.40804 6.83132 7.06926 7.13654 7.83043 8.32027 9.14822 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.018215 B = 0.003582 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.822631 B = 7814.097711 C = 8608.010210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.230 3.770 3 N -0.532 5.532 4 C 0.340 3.660 5 N -0.553 5.553 6 C 0.402 3.598 7 O -0.478 6.478 8 C -0.264 4.264 9 C 0.582 3.418 10 O -0.567 6.567 11 N -0.690 5.690 12 C 0.150 3.850 13 H 0.058 0.942 14 C 0.143 3.857 15 N -0.606 5.606 16 C -0.269 4.269 17 H 0.053 0.947 18 C -0.040 4.040 19 N -0.927 5.927 20 Si 0.961 3.039 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.278 1.278 24 C 0.172 3.828 25 C -0.123 4.123 26 C -0.083 4.083 27 H 0.082 0.918 28 C -0.136 4.136 29 H 0.093 0.907 30 H 0.076 0.924 31 H 0.112 0.888 32 H 0.246 0.754 33 H 0.431 0.569 34 H 0.414 0.586 35 H 0.026 0.974 36 H 0.033 0.967 37 H 0.252 0.748 38 H 0.053 0.947 39 H 0.006 0.994 40 H 0.045 0.955 41 H 0.082 0.918 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.926 13.711 5.038 22.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.084 3.916 3 N -0.248 5.248 4 C 0.054 3.946 5 N -0.279 5.279 6 C 0.213 3.787 7 O -0.289 6.289 8 C -0.273 4.273 9 C 0.367 3.633 10 O -0.445 6.445 11 N -0.341 5.341 12 C 0.043 3.957 13 H 0.077 0.923 14 C 0.016 3.984 15 N -0.329 5.329 16 C -0.399 4.399 17 H 0.071 0.929 18 C -0.236 4.236 19 N -0.573 5.573 20 Si 0.789 3.211 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.204 1.204 24 C 0.047 3.953 25 C -0.163 4.163 26 C -0.102 4.102 27 H 0.101 0.899 28 C -0.193 4.193 29 H 0.111 0.889 30 H 0.095 0.905 31 H 0.131 0.869 32 H 0.262 0.738 33 H 0.296 0.704 34 H 0.251 0.749 35 H 0.044 0.956 36 H 0.052 0.948 37 H 0.061 0.939 38 H 0.072 0.928 39 H 0.024 0.976 40 H 0.064 0.936 41 H 0.101 0.899 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 17.040 14.030 3.792 22.396 hybrid contribution -1.138 -1.467 -0.129 1.861 sum 15.902 12.563 3.664 20.594 Atomic orbital electron populations 1.20983 0.86232 1.05345 1.04808 1.22018 0.98323 0.85919 0.85315 1.68423 1.10826 1.28682 1.16881 1.25837 0.85981 0.97071 0.85693 1.68188 1.42672 0.98723 1.18282 1.19447 0.85242 0.86477 0.87491 1.84664 1.72296 1.35818 1.36156 1.21625 0.95436 0.96006 1.14268 1.17776 0.77887 0.83653 0.84030 1.90858 1.55319 1.65235 1.33078 1.45832 1.58000 1.22223 1.08065 1.21358 0.91936 0.83353 0.99013 0.92342 1.21234 0.91195 0.87820 0.98130 1.44184 1.47834 1.17287 1.23623 1.19355 1.04847 1.26505 0.89181 0.92878 1.25653 0.97313 1.02697 0.97983 1.70145 1.29989 1.39900 1.17251 0.85441 0.77897 0.78746 0.78978 1.20726 1.21309 1.20433 1.20709 0.92260 0.95271 0.87107 1.22083 0.96240 0.96544 1.01412 1.21243 0.97379 0.96159 0.95404 0.89920 1.21787 0.93000 1.02384 1.02138 0.88901 0.90511 0.86919 0.73830 0.70423 0.74850 0.95638 0.94822 0.93872 0.92820 0.97606 0.93635 0.89906 0.90978 0.90928 0.93697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.32 9.86 71.23 0.70 -1.62 16 2 C 0.23 5.01 6.86 42.87 0.29 5.30 16 3 N -0.53 -10.23 10.36 -187.21 -1.94 -12.17 16 4 C 0.34 5.39 12.27 180.86 2.22 7.61 16 5 N -0.55 -10.94 10.45 -312.05 -3.26 -14.20 16 6 C 0.40 8.79 7.85 85.18 0.67 9.45 16 7 O -0.48 -9.45 13.10 -85.64 -1.12 -10.57 16 8 C -0.26 -6.32 5.67 -19.83 -0.11 -6.43 16 9 C 0.58 17.07 5.48 86.70 0.47 17.54 16 10 O -0.57 -22.97 16.77 -3.99 -0.07 -23.03 16 11 N -0.69 -17.05 4.37 -445.32 -1.94 -18.99 16 12 C 0.15 4.90 2.06 45.07 0.09 4.99 16 13 H 0.06 2.33 7.58 -2.39 -0.02 2.32 16 14 C 0.14 6.00 6.09 86.36 0.53 6.53 16 15 N -0.61 -30.59 3.00 -699.10 -2.09 -32.69 16 16 C -0.27 -15.31 9.58 84.03 0.81 -14.51 16 17 H 0.05 3.09 7.89 -2.91 -0.02 3.07 16 18 C -0.04 -2.28 4.91 84.86 0.42 -1.86 16 19 N -0.93 -54.25 11.19 21.65 0.24 -54.01 16 20 Si 0.96 45.76 29.59 68.60 2.03 47.79 16 21 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 22 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 23 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 24 C 0.17 7.96 5.31 86.36 0.46 8.42 16 25 C -0.12 -4.23 5.36 30.67 0.16 -4.07 16 26 C -0.08 -2.26 2.27 -10.76 -0.02 -2.28 16 27 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 28 C -0.14 -2.64 9.02 71.98 0.65 -1.99 16 29 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.08 1.69 7.17 -2.39 -0.02 1.67 16 31 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.25 1.61 8.06 -2.91 -0.02 1.58 16 33 H 0.43 3.65 9.06 -74.06 -0.67 2.98 16 34 H 0.41 7.12 8.29 -92.71 -0.77 6.35 16 35 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.03 1.55 7.93 -2.39 -0.02 1.53 16 37 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 38 H 0.05 2.86 6.03 -2.39 -0.01 2.85 16 39 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 40 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 42 H 0.07 1.02 7.36 -2.39 -0.02 1.00 16 43 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -77.09 363.68 -1.22 -78.31 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -0.40 Total: 12.49 kcal Atomic # 6 Polarization: 19.74 SS G_CDS: 7.34 Total: 27.08 kcal Atomic # 7 Polarization: -123.07 SS G_CDS: -9.00 Total: -132.07 kcal Atomic # 8 Polarization: -32.42 SS G_CDS: -1.19 Total: -33.61 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -77.09 -1.22 -78.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967940346.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.779 kcal (2) G-P(sol) polarization free energy of solvation -77.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds