Wall clock time and date at job start Tue Mar 31 2020 13:11:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.32209 * 120.51354 * 2 1 4 4 C 1.31904 * 121.14846 * 179.97438 * 3 2 1 5 5 N 1.31757 * 122.19250 * 359.97438 * 4 3 2 6 6 C 1.32743 * 120.87352 * 359.73928 * 5 4 3 7 7 O 1.35272 * 120.61813 * 180.26542 * 6 5 4 8 8 C 1.39777 * 120.50734 * 179.97438 * 2 1 3 9 9 C 1.47528 * 120.98037 * 0.02562 * 8 2 1 10 10 O 1.21590 * 119.99600 * 90.00620 * 9 8 2 11 11 N 1.34781 * 120.00200 * 270.27472 * 9 8 2 12 12 C 1.46497 * 119.99760 * 179.72229 * 11 9 8 13 13 H 1.08994 * 109.50555 * 325.00693 * 12 11 9 14 14 C 1.53192 * 109.49630 * 85.07043 * 12 11 9 15 15 N 1.46934 * 108.77300 * 174.54973 * 14 12 11 16 16 C 1.36941 * 120.60267 * 126.42369 * 15 14 12 17 17 H 1.07993 * 119.99934 * 332.65031 * 16 15 14 18 18 C 1.38806 * 119.99800 * 152.64964 * 16 15 14 19 19 N 1.31621 * 120.00211 * 159.34120 * 18 16 15 20 20 Si 1.86803 * 120.00009 * 339.34013 * 18 16 15 21 21 H 1.48497 * 109.47134 * 92.95901 * 20 18 16 22 22 H 1.48501 * 109.47063 * 212.95337 * 20 18 16 23 23 H 1.48494 * 109.47374 * 332.95292 * 20 18 16 24 24 C 1.46924 * 118.76663 * 306.44325 * 15 14 12 25 25 C 1.53196 * 108.77203 * 53.58581 * 24 15 14 26 26 C 1.53036 * 109.49756 * 204.93789 * 12 11 9 27 27 H 1.09000 * 109.46031 * 298.69413 * 26 12 11 28 28 C 1.52999 * 109.45975 * 58.66534 * 26 12 11 29 29 H 1.08999 * 109.46988 * 270.02235 * 1 2 3 30 30 H 1.08997 * 109.47398 * 30.02155 * 1 2 3 31 31 H 1.09000 * 109.47330 * 150.02550 * 1 2 3 32 32 H 1.08002 * 118.90302 * 179.97438 * 4 3 2 33 33 H 0.96701 * 114.00956 * 270.26519 * 7 6 5 34 34 H 0.96996 * 120.00014 * 359.73515 * 11 9 8 35 35 H 1.09004 * 109.58923 * 294.37675 * 14 12 11 36 36 H 1.09006 * 109.58622 * 54.79488 * 14 12 11 37 37 H 0.97001 * 120.00150 * 179.97438 * 19 18 16 38 38 H 1.09000 * 109.58555 * 293.80671 * 24 15 14 39 39 H 1.08991 * 109.70380 * 173.44604 * 24 15 14 40 40 H 1.08999 * 109.49363 * 185.41552 * 25 24 15 41 41 H 1.08997 * 109.49454 * 65.32078 * 25 24 15 42 42 H 1.09004 * 109.46865 * 60.00095 * 28 26 12 43 43 H 1.09000 * 109.47260 * 179.97438 * 28 26 12 44 44 H 1.09002 * 109.47152 * 300.00117 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1782 1.1390 0.0000 4 6 3.4972 1.1536 0.0005 5 7 4.2115 0.0464 0.0015 6 6 3.6233 -1.1436 0.0073 7 8 4.3617 -2.2770 0.0137 8 6 2.2165 -1.2043 0.0005 9 6 1.5123 -2.5006 0.0006 10 8 1.2227 -3.0351 -1.0525 11 7 1.1852 -3.0899 1.1678 12 6 0.4805 -4.3742 1.1676 13 1 -0.2089 -4.4110 0.3243 14 6 1.4963 -5.5147 1.0476 15 7 0.7876 -6.7950 1.1805 16 6 0.9203 -7.7677 0.2257 17 1 1.1504 -7.4958 -0.7938 18 6 0.7592 -9.1031 0.5684 19 7 0.4807 -9.9921 -0.3614 20 14 0.9375 -9.6385 2.3491 21 1 -0.3954 -9.6320 3.0038 22 1 1.5067 -11.0092 2.3993 23 1 1.8428 -8.7003 3.0599 24 6 -0.0661 -7.0118 2.3564 25 6 -1.0644 -5.8545 2.4610 26 6 -0.3017 -4.5278 2.4740 27 1 0.3909 -4.5156 3.3156 28 6 -1.2934 -3.3711 2.6132 29 1 -0.3633 0.0004 1.0277 30 1 -0.3634 0.8897 -0.5141 31 1 -0.3634 -0.8902 -0.5134 32 1 4.0087 2.1048 0.0001 33 1 4.5806 -2.6090 -0.8678 34 1 1.4163 -2.6635 2.0078 35 1 1.9862 -5.4668 0.0750 36 1 2.2408 -5.4258 1.8388 37 1 0.3684 -10.9254 -0.1220 38 1 0.5506 -7.0447 3.2546 39 1 -0.6067 -7.9522 2.2497 40 1 -1.6397 -5.9525 3.3816 41 1 -1.7393 -5.8778 1.6054 42 1 -1.9858 -3.3829 1.7714 43 1 -1.8510 -3.4805 3.5434 44 1 -0.7503 -2.4261 2.6237 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000967940348.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:48 Heat of formation + Delta-G solvation = -3.305991 kcal Electronic energy + Delta-G solvation = -27921.813589 eV Core-core repulsion = 24068.472778 eV Total energy + Delta-G solvation = -3853.340812 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.69695 -39.74668 -38.08200 -37.86550 -34.72536 -34.52400 -33.21280 -32.22103 -31.43361 -29.63451 -28.82065 -27.68445 -25.51465 -23.90762 -23.18302 -22.81629 -21.34687 -20.69490 -19.81881 -19.20712 -18.37451 -17.73450 -16.92330 -16.60494 -16.00654 -15.43379 -15.20362 -14.70646 -14.54920 -14.40381 -13.93903 -13.83139 -13.68219 -13.44531 -13.31031 -13.18274 -12.95937 -12.68651 -12.39012 -12.24564 -12.15118 -11.72697 -11.55758 -11.34469 -11.00714 -10.94724 -10.71525 -10.70212 -10.17696 -10.14314 -9.91309 -9.76630 -9.71539 -9.70040 -9.46241 -9.09339 -8.55632 -6.99268 -5.93940 -3.30764 0.24785 0.52920 2.40570 2.91804 3.03045 3.30521 3.31443 3.48028 3.50608 3.59159 3.87961 4.41042 4.52835 4.59944 4.79996 4.89582 4.94901 5.01022 5.08690 5.14832 5.19088 5.31122 5.41556 5.52983 5.68196 5.74824 5.77787 5.84554 5.87491 5.97885 6.05311 6.20687 6.30619 6.40788 6.43417 6.45895 6.56223 6.62015 6.71503 6.89926 7.01436 7.46993 7.60991 7.95359 8.13940 8.34396 8.94157 9.71959 10.07281 11.21963 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.019592 B = 0.003683 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.817017 B = 7601.401435 C = 8306.810914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.226 3.774 3 N -0.527 5.527 4 C 0.333 3.667 5 N -0.543 5.543 6 C 0.400 3.600 7 O -0.468 6.468 8 C -0.248 4.248 9 C 0.575 3.425 10 O -0.519 6.519 11 N -0.705 5.705 12 C 0.131 3.869 13 H 0.093 0.907 14 C 0.145 3.855 15 N -0.601 5.601 16 C -0.259 4.259 17 H 0.087 0.913 18 C 0.024 3.976 19 N -0.907 5.907 20 Si 0.882 3.118 21 H -0.288 1.288 22 H -0.303 1.303 23 H -0.271 1.271 24 C 0.121 3.879 25 C -0.126 4.126 26 C -0.093 4.093 27 H 0.069 0.931 28 C -0.144 4.144 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.206 0.794 33 H 0.418 0.582 34 H 0.396 0.604 35 H 0.068 0.932 36 H 0.024 0.976 37 H 0.263 0.737 38 H 0.025 0.975 39 H 0.075 0.925 40 H 0.060 0.940 41 H 0.068 0.932 42 H 0.055 0.945 43 H 0.053 0.947 44 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.870 22.356 5.121 22.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.080 3.920 3 N -0.244 5.244 4 C 0.046 3.954 5 N -0.268 5.268 6 C 0.212 3.788 7 O -0.277 6.277 8 C -0.257 4.257 9 C 0.358 3.642 10 O -0.395 6.395 11 N -0.355 5.355 12 C 0.026 3.974 13 H 0.112 0.888 14 C 0.017 3.983 15 N -0.324 5.324 16 C -0.387 4.387 17 H 0.104 0.896 18 C -0.174 4.174 19 N -0.550 5.550 20 Si 0.713 3.287 21 H -0.216 1.216 22 H -0.232 1.232 23 H -0.196 1.196 24 C -0.004 4.004 25 C -0.166 4.166 26 C -0.112 4.112 27 H 0.087 0.913 28 C -0.202 4.202 29 H 0.111 0.889 30 H 0.110 0.890 31 H 0.106 0.894 32 H 0.222 0.778 33 H 0.279 0.721 34 H 0.230 0.770 35 H 0.086 0.914 36 H 0.041 0.959 37 H 0.072 0.928 38 H 0.043 0.957 39 H 0.093 0.907 40 H 0.078 0.922 41 H 0.087 0.913 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.090 22.563 4.867 23.107 hybrid contribution 0.130 -1.078 0.974 1.459 sum 1.221 21.485 5.841 22.298 Atomic orbital electron populations 1.20941 0.86908 1.05109 1.04351 1.21817 0.97759 0.85979 0.86425 1.68296 1.10211 1.29416 1.16451 1.24966 0.86260 0.96144 0.88061 1.68080 1.42670 0.98710 1.17308 1.19433 0.85622 0.86018 0.87690 1.84630 1.72364 1.35693 1.34973 1.21896 0.95123 0.97114 1.11557 1.17492 0.78837 0.83198 0.84710 1.90896 1.53350 1.64289 1.30924 1.46059 1.58649 1.23146 1.07607 1.21822 0.95092 0.81711 0.98780 0.88850 1.21209 0.92150 0.84648 1.00250 1.44283 1.50627 1.13675 1.23841 1.18939 1.45030 0.85092 0.89687 0.89576 1.25256 0.99591 0.95625 0.96973 1.69842 1.49872 1.02480 1.32815 0.86961 0.77737 0.77106 0.86896 1.21619 1.23160 1.19628 1.21403 0.91907 0.97239 0.89850 1.22071 0.98686 0.94290 1.01507 1.21311 0.97121 0.95927 0.96813 0.91270 1.21849 0.99106 0.97522 1.01701 0.88858 0.88978 0.89402 0.77814 0.72057 0.77005 0.91367 0.95855 0.92760 0.95669 0.90690 0.92156 0.91303 0.92547 0.92746 0.93267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.96 9.85 36.00 0.35 -0.61 16 2 C 0.23 2.38 6.86 -81.86 -0.56 1.81 16 3 N -0.53 -5.31 10.35 -10.52 -0.11 -5.42 16 4 C 0.33 3.03 12.27 -92.09 -1.13 1.90 16 5 N -0.54 -6.06 10.45 -14.32 -0.15 -6.21 16 6 C 0.40 4.78 7.85 -16.18 -0.13 4.65 16 7 O -0.47 -5.41 13.10 -17.51 -0.23 -5.64 16 8 C -0.25 -2.97 5.67 -104.56 -0.59 -3.56 16 9 C 0.58 8.11 5.48 -12.47 -0.07 8.04 16 10 O -0.52 -9.44 16.77 5.29 0.09 -9.36 16 11 N -0.70 -9.12 4.37 -54.74 -0.24 -9.35 16 12 C 0.13 2.09 2.06 -67.81 -0.14 1.95 16 13 H 0.09 1.73 7.58 -51.93 -0.39 1.33 16 14 C 0.14 2.89 6.09 -3.71 -0.02 2.87 16 15 N -0.60 -14.18 2.77 -172.31 -0.48 -14.65 16 16 C -0.26 -7.31 10.03 -15.06 -0.15 -7.47 16 17 H 0.09 2.64 8.05 -52.49 -0.42 2.22 16 18 C 0.02 0.71 5.23 -17.43 -0.09 0.62 16 19 N -0.91 -27.95 13.97 55.49 0.78 -27.17 16 20 Si 0.88 22.26 24.35 -169.99 -4.14 18.12 16 21 H -0.29 -6.95 6.62 56.52 0.37 -6.58 16 22 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16 23 H -0.27 -6.72 6.63 56.52 0.37 -6.34 16 24 C 0.12 2.56 4.20 -3.71 -0.02 2.54 16 25 C -0.13 -2.06 5.36 -26.61 -0.14 -2.21 16 26 C -0.09 -1.28 2.27 -90.58 -0.21 -1.49 16 27 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 28 C -0.14 -1.56 9.02 37.16 0.34 -1.22 16 29 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.09 0.84 7.18 -51.93 -0.37 0.47 16 32 H 0.21 1.04 8.06 -52.49 -0.42 0.62 16 33 H 0.42 3.27 9.06 45.56 0.41 3.69 16 34 H 0.40 4.20 8.29 -40.82 -0.34 3.86 16 35 H 0.07 1.49 7.93 -51.93 -0.41 1.07 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 38 H 0.03 0.52 7.08 -51.93 -0.37 0.16 16 39 H 0.08 1.75 4.50 -51.93 -0.23 1.51 16 40 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.05 0.45 7.36 -51.93 -0.38 0.07 16 LS Contribution 357.27 15.07 5.38 5.38 Total: -1.00 -34.84 357.27 -7.16 -41.99 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -5.50 Total: 4.47 kcal Atomic # 6 Polarization: 10.39 SS G_CDS: -2.56 Total: 7.83 kcal Atomic # 7 Polarization: -62.60 SS G_CDS: -0.20 Total: -62.80 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: -0.14 Total: -15.00 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.14 Total: 18.12 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.84 -7.16 -41.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967940348.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.686 kcal (2) G-P(sol) polarization free energy of solvation -34.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds