Wall clock time and date at job start Tue Mar 31 2020 13:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.32209 * 120.51354 * 2 1 4 4 C 1.31904 * 121.14846 * 179.97438 * 3 2 1 5 5 N 1.31757 * 122.19250 * 359.97438 * 4 3 2 6 6 C 1.32743 * 120.87352 * 359.73928 * 5 4 3 7 7 O 1.35272 * 120.61813 * 180.26542 * 6 5 4 8 8 C 1.39777 * 120.50734 * 179.97438 * 2 1 3 9 9 C 1.47528 * 120.98037 * 0.02562 * 8 2 1 10 10 O 1.21590 * 119.99600 * 90.00620 * 9 8 2 11 11 N 1.34781 * 120.00200 * 270.27472 * 9 8 2 12 12 C 1.46497 * 119.99760 * 179.72229 * 11 9 8 13 13 H 1.08994 * 109.50555 * 325.00693 * 12 11 9 14 14 C 1.53192 * 109.49630 * 85.07043 * 12 11 9 15 15 N 1.46934 * 108.77300 * 174.54973 * 14 12 11 16 16 C 1.36941 * 120.60267 * 126.42369 * 15 14 12 17 17 H 1.07993 * 119.99934 * 332.65031 * 16 15 14 18 18 C 1.38806 * 119.99800 * 152.64964 * 16 15 14 19 19 N 1.31621 * 120.00211 * 159.34120 * 18 16 15 20 20 Si 1.86803 * 120.00009 * 339.34013 * 18 16 15 21 21 H 1.48497 * 109.47134 * 92.95901 * 20 18 16 22 22 H 1.48501 * 109.47063 * 212.95337 * 20 18 16 23 23 H 1.48494 * 109.47374 * 332.95292 * 20 18 16 24 24 C 1.46924 * 118.76663 * 306.44325 * 15 14 12 25 25 C 1.53196 * 108.77203 * 53.58581 * 24 15 14 26 26 C 1.53036 * 109.49756 * 204.93789 * 12 11 9 27 27 H 1.09000 * 109.46031 * 298.69413 * 26 12 11 28 28 C 1.52999 * 109.45975 * 58.66534 * 26 12 11 29 29 H 1.08999 * 109.46988 * 270.02235 * 1 2 3 30 30 H 1.08997 * 109.47398 * 30.02155 * 1 2 3 31 31 H 1.09000 * 109.47330 * 150.02550 * 1 2 3 32 32 H 1.08002 * 118.90302 * 179.97438 * 4 3 2 33 33 H 0.96701 * 114.00956 * 270.26519 * 7 6 5 34 34 H 0.96996 * 120.00014 * 359.73515 * 11 9 8 35 35 H 1.09004 * 109.58923 * 294.37675 * 14 12 11 36 36 H 1.09006 * 109.58622 * 54.79488 * 14 12 11 37 37 H 0.97001 * 120.00150 * 179.97438 * 19 18 16 38 38 H 1.09000 * 109.58555 * 293.80671 * 24 15 14 39 39 H 1.08991 * 109.70380 * 173.44604 * 24 15 14 40 40 H 1.08999 * 109.49363 * 185.41552 * 25 24 15 41 41 H 1.08997 * 109.49454 * 65.32078 * 25 24 15 42 42 H 1.09004 * 109.46865 * 60.00095 * 28 26 12 43 43 H 1.09000 * 109.47260 * 179.97438 * 28 26 12 44 44 H 1.09002 * 109.47152 * 300.00117 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1782 1.1390 0.0000 4 6 3.4972 1.1536 0.0005 5 7 4.2115 0.0464 0.0015 6 6 3.6233 -1.1436 0.0073 7 8 4.3617 -2.2770 0.0137 8 6 2.2165 -1.2043 0.0005 9 6 1.5123 -2.5006 0.0006 10 8 1.2227 -3.0351 -1.0525 11 7 1.1852 -3.0899 1.1678 12 6 0.4805 -4.3742 1.1676 13 1 -0.2089 -4.4110 0.3243 14 6 1.4963 -5.5147 1.0476 15 7 0.7876 -6.7950 1.1805 16 6 0.9203 -7.7677 0.2257 17 1 1.1504 -7.4958 -0.7938 18 6 0.7592 -9.1031 0.5684 19 7 0.4807 -9.9921 -0.3614 20 14 0.9375 -9.6385 2.3491 21 1 -0.3954 -9.6320 3.0038 22 1 1.5067 -11.0092 2.3993 23 1 1.8428 -8.7003 3.0599 24 6 -0.0661 -7.0118 2.3564 25 6 -1.0644 -5.8545 2.4610 26 6 -0.3017 -4.5278 2.4740 27 1 0.3909 -4.5156 3.3156 28 6 -1.2934 -3.3711 2.6132 29 1 -0.3633 0.0004 1.0277 30 1 -0.3634 0.8897 -0.5141 31 1 -0.3634 -0.8902 -0.5134 32 1 4.0087 2.1048 0.0001 33 1 4.5806 -2.6090 -0.8678 34 1 1.4163 -2.6635 2.0078 35 1 1.9862 -5.4668 0.0750 36 1 2.2408 -5.4258 1.8388 37 1 0.3684 -10.9254 -0.1220 38 1 0.5506 -7.0447 3.2546 39 1 -0.6067 -7.9522 2.2497 40 1 -1.6397 -5.9525 3.3816 41 1 -1.7393 -5.8778 1.6054 42 1 -1.9858 -3.3829 1.7714 43 1 -1.8510 -3.4805 3.5434 44 1 -0.7503 -2.4261 2.6237 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000967940348.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:47 Heat of formation + Delta-G solvation = -32.473035 kcal Electronic energy + Delta-G solvation = -27923.078367 eV Core-core repulsion = 24068.472778 eV Total energy + Delta-G solvation = -3854.605589 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.56170 -40.96066 -39.34382 -38.86747 -36.31391 -35.35371 -34.59210 -33.41615 -33.12214 -30.92869 -29.69732 -29.16945 -26.52620 -25.54416 -24.26194 -23.92050 -22.92583 -21.87728 -21.22982 -20.04003 -19.21998 -18.90703 -18.74975 -17.60846 -17.26325 -17.04790 -16.37828 -16.01160 -15.64364 -15.48869 -15.33392 -15.25369 -14.98577 -14.65316 -14.45688 -14.39529 -13.88009 -13.81489 -13.71499 -13.57794 -13.30926 -13.14272 -12.70165 -12.63753 -12.53334 -12.47187 -12.21248 -11.78559 -11.61580 -11.49517 -11.44502 -11.29129 -11.11140 -10.77882 -10.67004 -10.54626 -10.24049 -8.94690 -8.18390 -5.52160 -0.57381 -0.28751 1.28143 1.29185 1.41406 1.51156 1.93211 2.12074 2.40237 2.48319 2.88979 3.03909 3.11342 3.27900 3.52056 3.70990 3.75779 3.91039 4.00557 4.06788 4.20809 4.30241 4.39976 4.51517 4.55907 4.57680 4.62241 4.82438 4.84619 4.89340 4.94859 4.98633 5.02551 5.11973 5.15836 5.16797 5.30212 5.41940 5.54570 5.64505 5.83266 6.09670 6.24681 6.37358 6.83165 6.88117 7.04884 7.58762 7.96602 9.01897 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.019592 B = 0.003683 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.817017 B = 7601.401435 C = 8306.810914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.232 3.768 3 N -0.531 5.531 4 C 0.340 3.660 5 N -0.556 5.556 6 C 0.396 3.604 7 O -0.482 6.482 8 C -0.264 4.264 9 C 0.583 3.417 10 O -0.568 6.568 11 N -0.689 5.689 12 C 0.147 3.853 13 H 0.063 0.937 14 C 0.145 3.855 15 N -0.615 5.615 16 C -0.255 4.255 17 H 0.038 0.962 18 C -0.034 4.034 19 N -0.959 5.959 20 Si 0.955 3.045 21 H -0.266 1.266 22 H -0.311 1.311 23 H -0.259 1.259 24 C 0.113 3.887 25 C -0.119 4.119 26 C -0.085 4.085 27 H 0.089 0.911 28 C -0.137 4.137 29 H 0.117 0.883 30 H 0.106 0.894 31 H 0.071 0.929 32 H 0.245 0.755 33 H 0.429 0.571 34 H 0.413 0.587 35 H 0.034 0.966 36 H 0.038 0.962 37 H 0.263 0.737 38 H 0.041 0.959 39 H 0.051 0.949 40 H 0.096 0.904 41 H 0.051 0.949 42 H 0.047 0.953 43 H 0.075 0.925 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.439 25.397 8.582 26.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.085 3.915 3 N -0.247 5.247 4 C 0.054 3.946 5 N -0.282 5.282 6 C 0.208 3.792 7 O -0.293 6.293 8 C -0.273 4.273 9 C 0.368 3.632 10 O -0.446 6.446 11 N -0.339 5.339 12 C 0.041 3.959 13 H 0.081 0.919 14 C 0.018 3.982 15 N -0.340 5.340 16 C -0.384 4.384 17 H 0.056 0.944 18 C -0.229 4.229 19 N -0.604 5.604 20 Si 0.783 3.217 21 H -0.193 1.193 22 H -0.240 1.240 23 H -0.184 1.184 24 C -0.011 4.011 25 C -0.159 4.159 26 C -0.104 4.104 27 H 0.107 0.893 28 C -0.194 4.194 29 H 0.135 0.865 30 H 0.124 0.876 31 H 0.090 0.910 32 H 0.260 0.740 33 H 0.293 0.707 34 H 0.250 0.750 35 H 0.052 0.948 36 H 0.056 0.944 37 H 0.072 0.928 38 H 0.059 0.941 39 H 0.069 0.931 40 H 0.115 0.885 41 H 0.070 0.930 42 H 0.066 0.934 43 H 0.094 0.906 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.665 25.677 8.379 27.017 hybrid contribution 0.323 -1.921 -0.225 1.961 sum 0.987 23.756 8.155 25.136 Atomic orbital electron populations 1.21016 0.85443 1.04946 1.05755 1.22147 0.98745 0.85501 0.85065 1.68427 1.10620 1.28758 1.16876 1.25820 0.86162 0.96924 0.85722 1.68183 1.42958 0.98802 1.18245 1.19558 0.85650 0.86407 0.87590 1.84576 1.72445 1.36031 1.36234 1.21662 0.95106 0.96303 1.14228 1.17767 0.77833 0.83601 0.84024 1.90879 1.55242 1.65795 1.32708 1.45813 1.57937 1.21877 1.08272 1.21362 0.93581 0.81471 0.99491 0.91914 1.21269 0.93306 0.84772 0.98829 1.44346 1.52058 1.13777 1.23853 1.18779 1.44003 0.86613 0.89043 0.94374 1.25949 0.99791 0.95455 1.01718 1.69990 1.52159 1.02831 1.35453 0.85789 0.78686 0.75986 0.81221 1.19257 1.24033 1.18366 1.21542 0.92496 0.98300 0.88789 1.21991 0.97611 0.93654 1.02626 1.21286 0.97701 0.95949 0.95502 0.89299 1.21789 0.98381 0.96777 1.02467 0.86523 0.87579 0.91045 0.73953 0.70688 0.74975 0.94760 0.94442 0.92819 0.94149 0.93116 0.88520 0.92966 0.93388 0.90576 0.91173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.65 9.85 71.23 0.70 -0.94 16 2 C 0.23 4.41 6.86 42.87 0.29 4.70 16 3 N -0.53 -9.24 10.35 -187.21 -1.94 -11.18 16 4 C 0.34 5.25 12.27 180.86 2.22 7.46 16 5 N -0.56 -11.43 10.45 -312.05 -3.26 -14.70 16 6 C 0.40 9.12 7.85 85.19 0.67 9.79 16 7 O -0.48 -11.14 13.10 -85.57 -1.12 -12.26 16 8 C -0.26 -6.08 5.67 -19.83 -0.11 -6.19 16 9 C 0.58 16.47 5.48 86.69 0.47 16.95 16 10 O -0.57 -21.66 16.77 -4.00 -0.07 -21.73 16 11 N -0.69 -16.98 4.37 -445.35 -1.94 -18.92 16 12 C 0.15 4.61 2.06 45.07 0.09 4.71 16 13 H 0.06 2.40 7.58 -2.39 -0.02 2.38 16 14 C 0.14 5.89 6.09 86.36 0.53 6.41 16 15 N -0.62 -29.58 2.77 -699.08 -1.94 -31.52 16 16 C -0.25 -15.14 10.03 84.03 0.84 -14.29 16 17 H 0.04 2.56 8.05 -2.91 -0.02 2.54 16 18 C -0.03 -2.06 5.23 84.86 0.44 -1.62 16 19 N -0.96 -61.78 13.97 21.65 0.30 -61.47 16 20 Si 0.96 46.66 24.35 68.60 1.67 48.33 16 21 H -0.27 -11.98 6.62 99.48 0.66 -11.32 16 22 H -0.31 -15.51 7.11 99.48 0.71 -14.80 16 23 H -0.26 -12.02 6.63 99.48 0.66 -11.36 16 24 C 0.11 4.58 4.20 86.36 0.36 4.95 16 25 C -0.12 -3.61 5.36 30.67 0.16 -3.45 16 26 C -0.09 -2.10 2.27 -10.77 -0.02 -2.12 16 27 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 28 C -0.14 -2.38 9.02 71.98 0.65 -1.73 16 29 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.07 1.30 7.18 -2.39 -0.02 1.28 16 32 H 0.24 1.54 8.06 -2.91 -0.02 1.52 16 33 H 0.43 7.06 9.06 -74.06 -0.67 6.39 16 34 H 0.41 7.57 8.29 -92.71 -0.77 6.81 16 35 H 0.03 1.59 7.93 -2.39 -0.02 1.57 16 36 H 0.04 1.42 8.14 -2.38 -0.02 1.41 16 37 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 38 H 0.04 1.54 7.08 -2.39 -0.02 1.52 16 39 H 0.05 2.30 4.50 -2.39 -0.01 2.29 16 40 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 41 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.07 0.95 7.36 -2.39 -0.02 0.93 16 Total: -1.00 -80.80 357.27 -1.48 -82.28 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: -0.49 Total: 16.53 kcal Atomic # 6 Polarization: 17.33 SS G_CDS: 7.30 Total: 24.63 kcal Atomic # 7 Polarization: -129.01 SS G_CDS: -8.78 Total: -137.79 kcal Atomic # 8 Polarization: -32.80 SS G_CDS: -1.19 Total: -33.99 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 1.67 Total: 48.33 kcal Total: -80.80 -1.48 -82.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967940348.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.809 kcal (2) G-P(sol) polarization free energy of solvation -80.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds