Wall clock time and date at job start Tue Mar 31 2020 12:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 119.99987 * 2 1 4 4 H 1.48504 * 109.47001 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47610 * 300.00263 * 3 2 1 6 6 H 1.48502 * 109.46877 * 60.00066 * 3 2 1 7 7 C 1.38813 * 119.99624 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99713 * 194.60730 * 7 2 1 9 9 N 1.36936 * 120.00221 * 14.60821 * 7 2 1 10 10 C 1.47609 * 118.64074 * 27.73311 * 9 7 2 11 11 C 1.53940 * 112.14496 * 137.86481 * 10 9 7 12 12 C 1.50881 * 110.09495 * 319.43197 * 11 10 9 13 13 C 1.52564 * 109.35133 * 91.88826 * 12 11 10 14 14 C 1.47151 * 114.34539 * 274.99709 * 13 12 11 15 15 C 1.44582 * 118.64015 * 207.74772 * 9 7 2 16 16 H 1.08997 * 109.44483 * 150.70794 * 15 9 7 17 17 C 1.52997 * 109.44634 * 30.75877 * 15 9 7 18 18 N 1.46500 * 109.47301 * 55.00278 * 17 15 9 19 19 C 1.34781 * 119.99810 * 179.97438 * 18 17 15 20 20 O 1.21539 * 120.00024 * 359.97438 * 19 18 17 21 21 C 1.47932 * 119.99587 * 179.97438 * 19 18 17 22 22 C 1.39977 * 120.11284 * 180.02562 * 21 19 18 23 23 C 1.38414 * 117.96806 * 179.97438 * 22 21 19 24 24 C 1.39350 * 118.03849 * 359.97438 * 23 22 21 25 25 O 1.35517 * 120.03208 * 180.02562 * 24 23 22 26 26 N 1.32678 * 119.94218 * 0.02562 * 24 23 22 27 27 N 1.28352 * 122.19557 * 359.97438 * 26 24 23 28 28 H 0.97001 * 119.99735 * 0.02562 * 1 2 3 29 29 H 1.09004 * 108.94252 * 258.54881 * 10 9 7 30 30 H 1.08997 * 108.94869 * 17.26196 * 10 9 7 31 31 H 1.09001 * 109.37034 * 79.62553 * 11 10 9 32 32 H 1.09002 * 109.36404 * 199.37295 * 11 10 9 33 33 H 1.08998 * 109.49297 * 211.85690 * 12 11 10 34 34 H 1.09008 * 109.49095 * 331.90561 * 12 11 10 35 35 H 1.09000 * 108.51020 * 36.23088 * 13 12 11 36 36 H 1.08993 * 108.51435 * 153.87558 * 13 12 11 37 37 H 1.08999 * 109.31535 * 302.52923 * 14 13 12 38 38 H 1.09005 * 109.35265 * 183.04425 * 14 13 12 39 39 H 1.09003 * 109.47280 * 294.99208 * 17 15 9 40 40 H 1.09006 * 109.46461 * 175.00007 * 17 15 9 41 41 H 0.96996 * 119.99685 * 359.97438 * 18 17 15 42 42 H 1.07998 * 121.01708 * 359.95198 * 22 21 19 43 43 H 1.08005 * 120.98586 * 180.02562 * 23 22 21 44 44 H 0.96701 * 114.00275 * 269.98482 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0641 -1.2174 0.2354 9 7 1.3587 -2.3688 -0.3001 10 6 0.1768 -2.3126 -1.1826 11 6 0.1656 -3.4579 -2.2111 12 6 1.5569 -3.6859 -2.7484 13 6 2.2579 -4.7450 -1.9032 14 6 2.9098 -4.2212 -0.6924 15 6 1.8568 -3.6046 0.2613 16 1 1.0305 -4.3037 0.3897 17 6 2.5022 -3.3233 1.6196 18 7 1.5407 -2.6344 2.4840 19 6 1.8914 -2.2845 3.7374 20 8 3.0053 -2.5408 4.1507 21 6 0.9206 -1.5884 4.6100 22 6 1.2825 -1.2234 5.9120 23 6 0.3397 -0.5736 6.6897 24 6 -0.9110 -0.3221 6.1292 25 8 -1.8641 0.3121 6.8544 26 7 -1.1680 -0.7041 4.8848 27 7 -0.2964 -1.3069 4.1607 28 1 -0.4850 0.8401 -0.0004 29 1 -0.7240 -2.3762 -0.5721 30 1 0.1770 -1.3611 -1.7143 31 1 -0.1911 -4.3700 -1.7326 32 1 -0.4997 -3.1977 -3.0345 33 1 1.4964 -4.0267 -3.7819 34 1 2.1207 -2.7539 -2.7052 35 1 1.5223 -5.4918 -1.6042 36 1 3.0146 -5.2330 -2.5175 37 1 3.6329 -3.4560 -0.9746 38 1 3.4280 -5.0327 -0.1813 39 1 3.3817 -2.6944 1.4807 40 1 2.7981 -4.2645 2.0830 41 1 0.6517 -2.4302 2.1541 42 1 2.2670 -1.4424 6.2980 43 1 0.5670 -0.2696 7.7008 44 1 -2.4315 -0.2826 7.3638 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968735210.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:13 Heat of formation + Delta-G solvation = 6.781841 kcal Electronic energy + Delta-G solvation = -28063.274652 eV Core-core repulsion = 24210.371282 eV Total energy + Delta-G solvation = -3852.903370 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.17429 -39.15521 -38.07060 -37.51235 -34.58373 -33.48718 -33.14232 -32.10576 -31.15420 -30.60159 -27.14689 -25.81537 -24.97303 -24.28875 -23.41651 -22.17931 -20.49217 -19.73069 -19.24027 -19.14329 -17.96755 -17.54652 -16.25236 -16.01302 -15.59024 -15.17610 -14.85825 -14.66495 -14.34161 -14.10373 -13.99785 -13.56798 -13.50723 -13.31963 -12.84761 -12.73812 -12.38384 -12.05250 -11.93588 -11.71558 -11.47924 -11.22477 -11.05611 -10.83530 -10.54609 -10.37543 -10.16375 -10.01002 -9.96015 -9.77053 -9.70343 -9.64594 -9.52498 -9.47516 -9.41393 -8.37363 -8.29080 -6.64123 -5.75317 -3.20086 0.43635 0.72317 2.81798 3.27198 3.37425 3.47425 3.47803 3.52330 3.84601 4.16354 4.51113 4.57232 4.68105 4.88678 5.05967 5.23395 5.39848 5.47330 5.51073 5.57925 5.67199 5.75510 5.89744 5.95226 6.04347 6.09339 6.16793 6.28946 6.40821 6.58105 6.63343 6.67648 6.72508 6.77461 6.88672 7.01195 7.08740 7.12653 7.17195 7.47890 7.74420 7.87749 8.13881 8.48154 8.61038 8.72711 9.25959 9.90559 10.35769 11.30953 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013245 B = 0.004569 C = 0.004099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.421921 B = 6126.460831 C = 6829.405627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.015 3.985 3 Si 0.888 3.112 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.294 1.294 7 C -0.256 4.256 8 H 0.063 0.937 9 N -0.583 5.583 10 C 0.180 3.820 11 C -0.143 4.143 12 C -0.106 4.106 13 C -0.100 4.100 14 C -0.136 4.136 15 C 0.173 3.827 16 H 0.046 0.954 17 C 0.126 3.874 18 N -0.660 5.660 19 C 0.568 3.432 20 O -0.554 6.554 21 C 0.024 3.976 22 C -0.053 4.053 23 C -0.147 4.147 24 C 0.262 3.738 25 O -0.474 6.474 26 N -0.251 5.251 27 N -0.161 5.161 28 H 0.253 0.747 29 H 0.026 0.974 30 H 0.074 0.926 31 H 0.043 0.957 32 H 0.048 0.952 33 H 0.038 0.962 34 H 0.074 0.926 35 H 0.046 0.954 36 H 0.040 0.960 37 H 0.063 0.937 38 H 0.048 0.952 39 H 0.073 0.927 40 H 0.055 0.945 41 H 0.424 0.576 42 H 0.165 0.835 43 H 0.159 0.841 44 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.746 -6.717 8.852 11.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.184 4.184 3 Si 0.718 3.282 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.221 1.221 7 C -0.386 4.386 8 H 0.080 0.920 9 N -0.305 5.305 10 C 0.056 3.944 11 C -0.182 4.182 12 C -0.144 4.144 13 C -0.138 4.138 14 C -0.177 4.177 15 C 0.064 3.936 16 H 0.064 0.936 17 C 0.001 3.999 18 N -0.308 5.308 19 C 0.350 3.650 20 O -0.433 6.433 21 C -0.123 4.123 22 C -0.082 4.082 23 C -0.177 4.177 24 C 0.077 3.923 25 O -0.279 6.279 26 N -0.104 5.104 27 N -0.010 5.010 28 H 0.063 0.937 29 H 0.044 0.956 30 H 0.093 0.907 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.057 0.943 34 H 0.092 0.908 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.091 0.909 40 H 0.073 0.927 41 H 0.263 0.737 42 H 0.182 0.818 43 H 0.176 0.824 44 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -0.991 -6.307 7.693 9.997 hybrid contribution 0.763 1.015 1.220 1.761 sum -0.228 -5.292 8.913 10.368 Atomic orbital electron populations 1.70027 1.04798 1.25252 1.53301 1.24926 0.95130 0.97803 1.00573 0.86454 0.79596 0.84971 0.77153 1.20392 1.21639 1.22080 1.19005 0.91943 0.84510 1.43155 0.91972 1.43700 1.32649 1.01586 1.52547 1.21015 0.88222 0.95469 0.89737 1.22075 0.96057 1.00538 0.99545 1.20947 0.97131 0.99807 0.96516 1.20292 0.98883 0.97941 0.96687 1.21388 0.99541 0.99726 0.97015 1.20508 0.94018 0.89693 0.89415 0.93633 1.21631 0.92780 0.95281 0.90193 1.45643 1.18829 1.55286 1.11090 1.17347 0.85694 0.79570 0.82424 1.90740 1.20641 1.56888 1.75073 1.23137 0.94937 0.99663 0.94569 1.22397 1.01004 0.92523 0.92299 1.22489 0.93656 0.98953 1.02569 1.21103 0.89097 0.91484 0.90612 1.84750 1.46865 1.34500 1.61809 1.73191 1.26050 1.07428 1.03737 1.73494 0.98862 1.04093 1.24553 0.93710 0.95585 0.90744 0.93824 0.93305 0.94275 0.90755 0.93521 0.94141 0.91786 0.93331 0.90896 0.92711 0.73725 0.81762 0.82371 0.73663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.22 11.03 55.49 0.61 -23.61 16 2 C 0.02 0.41 4.89 -17.43 -0.09 0.32 16 3 Si 0.89 21.76 29.58 -169.99 -5.03 16.74 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 7 C -0.26 -6.35 7.65 -15.06 -0.12 -6.46 16 8 H 0.06 1.60 6.72 -52.48 -0.35 1.25 16 9 N -0.58 -12.74 1.78 -164.46 -0.29 -13.03 16 10 C 0.18 3.96 4.66 -2.95 -0.01 3.94 16 11 C -0.14 -2.57 5.71 -27.31 -0.16 -2.72 16 12 C -0.11 -1.80 5.51 -28.02 -0.15 -1.96 16 13 C -0.10 -1.56 5.16 -29.76 -0.15 -1.71 16 14 C -0.14 -2.24 5.07 -28.55 -0.14 -2.39 16 15 C 0.17 3.22 2.19 -67.97 -0.15 3.07 16 16 H 0.05 0.84 8.07 -51.93 -0.42 0.42 16 17 C 0.13 2.36 4.52 -4.04 -0.02 2.34 16 18 N -0.66 -13.18 4.71 -61.22 -0.29 -13.47 16 19 C 0.57 11.08 7.81 -12.29 -0.10 10.98 16 20 O -0.55 -11.42 16.39 5.33 0.09 -11.34 16 21 C 0.02 0.42 6.83 -82.85 -0.57 -0.14 16 22 C -0.05 -0.72 9.72 -38.87 -0.38 -1.10 16 23 C -0.15 -1.67 10.14 -39.10 -0.40 -2.06 16 24 C 0.26 3.57 7.85 -16.77 -0.13 3.44 16 25 O -0.47 -5.11 13.56 -18.24 -0.25 -5.36 16 26 N -0.25 -4.44 11.54 30.55 0.35 -4.09 16 27 N -0.16 -3.09 10.73 33.32 0.36 -2.73 16 28 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 29 H 0.03 0.62 8.02 -51.93 -0.42 0.21 16 30 H 0.07 1.86 6.40 -51.93 -0.33 1.53 16 31 H 0.04 0.74 7.32 -51.93 -0.38 0.36 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 1.45 7.48 -51.92 -0.39 1.06 16 35 H 0.05 0.70 7.36 -51.93 -0.38 0.31 16 36 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.05 0.70 8.11 -51.93 -0.42 0.28 16 39 H 0.07 1.50 6.83 -51.93 -0.35 1.15 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.42 9.16 7.43 -40.82 -0.30 8.85 16 42 H 0.16 1.91 7.71 -52.49 -0.40 1.50 16 43 H 0.16 1.16 8.06 -52.48 -0.42 0.74 16 44 H 0.40 1.99 9.06 45.56 0.41 2.41 16 LS Contribution 355.90 15.07 5.36 5.36 Total: -1.00 -30.53 355.90 -7.05 -37.59 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -5.41 Total: 8.38 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: -2.56 Total: 5.55 kcal Atomic # 7 Polarization: -57.67 SS G_CDS: 0.74 Total: -56.92 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: -0.16 Total: -16.70 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.74 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.53 -7.05 -37.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968735210.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.369 kcal (2) G-P(sol) polarization free energy of solvation -30.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds