Wall clock time and date at job start Tue Mar 31 2020 12:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 119.99987 * 2 1 4 4 H 1.48504 * 109.47001 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47610 * 300.00263 * 3 2 1 6 6 H 1.48502 * 109.46877 * 60.00066 * 3 2 1 7 7 C 1.38813 * 119.99624 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99713 * 194.60730 * 7 2 1 9 9 N 1.36936 * 120.00221 * 14.60821 * 7 2 1 10 10 C 1.47609 * 118.64074 * 27.73311 * 9 7 2 11 11 C 1.53940 * 112.14496 * 137.86481 * 10 9 7 12 12 C 1.50881 * 110.09495 * 319.43197 * 11 10 9 13 13 C 1.52564 * 109.35133 * 91.88826 * 12 11 10 14 14 C 1.47151 * 114.34539 * 274.99709 * 13 12 11 15 15 C 1.44582 * 118.64015 * 207.74772 * 9 7 2 16 16 H 1.08997 * 109.44483 * 150.70794 * 15 9 7 17 17 C 1.52997 * 109.44634 * 30.75877 * 15 9 7 18 18 N 1.46500 * 109.47301 * 55.00278 * 17 15 9 19 19 C 1.34781 * 119.99810 * 179.97438 * 18 17 15 20 20 O 1.21539 * 120.00024 * 359.97438 * 19 18 17 21 21 C 1.47932 * 119.99587 * 179.97438 * 19 18 17 22 22 C 1.39977 * 120.11284 * 180.02562 * 21 19 18 23 23 C 1.38414 * 117.96806 * 179.97438 * 22 21 19 24 24 C 1.39350 * 118.03849 * 359.97438 * 23 22 21 25 25 O 1.35517 * 120.03208 * 180.02562 * 24 23 22 26 26 N 1.32678 * 119.94218 * 0.02562 * 24 23 22 27 27 N 1.28352 * 122.19557 * 359.97438 * 26 24 23 28 28 H 0.97001 * 119.99735 * 0.02562 * 1 2 3 29 29 H 1.09004 * 108.94252 * 258.54881 * 10 9 7 30 30 H 1.08997 * 108.94869 * 17.26196 * 10 9 7 31 31 H 1.09001 * 109.37034 * 79.62553 * 11 10 9 32 32 H 1.09002 * 109.36404 * 199.37295 * 11 10 9 33 33 H 1.08998 * 109.49297 * 211.85690 * 12 11 10 34 34 H 1.09008 * 109.49095 * 331.90561 * 12 11 10 35 35 H 1.09000 * 108.51020 * 36.23088 * 13 12 11 36 36 H 1.08993 * 108.51435 * 153.87558 * 13 12 11 37 37 H 1.08999 * 109.31535 * 302.52923 * 14 13 12 38 38 H 1.09005 * 109.35265 * 183.04425 * 14 13 12 39 39 H 1.09003 * 109.47280 * 294.99208 * 17 15 9 40 40 H 1.09006 * 109.46461 * 175.00007 * 17 15 9 41 41 H 0.96996 * 119.99685 * 359.97438 * 18 17 15 42 42 H 1.07998 * 121.01708 * 359.95198 * 22 21 19 43 43 H 1.08005 * 120.98586 * 180.02562 * 23 22 21 44 44 H 0.96701 * 114.00275 * 269.98482 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0641 -1.2174 0.2354 9 7 1.3587 -2.3688 -0.3001 10 6 0.1768 -2.3126 -1.1826 11 6 0.1656 -3.4579 -2.2111 12 6 1.5569 -3.6859 -2.7484 13 6 2.2579 -4.7450 -1.9032 14 6 2.9098 -4.2212 -0.6924 15 6 1.8568 -3.6046 0.2613 16 1 1.0305 -4.3037 0.3897 17 6 2.5022 -3.3233 1.6196 18 7 1.5407 -2.6344 2.4840 19 6 1.8914 -2.2845 3.7374 20 8 3.0053 -2.5408 4.1507 21 6 0.9206 -1.5884 4.6100 22 6 1.2825 -1.2234 5.9120 23 6 0.3397 -0.5736 6.6897 24 6 -0.9110 -0.3221 6.1292 25 8 -1.8641 0.3121 6.8544 26 7 -1.1680 -0.7041 4.8848 27 7 -0.2964 -1.3069 4.1607 28 1 -0.4850 0.8401 -0.0004 29 1 -0.7240 -2.3762 -0.5721 30 1 0.1770 -1.3611 -1.7143 31 1 -0.1911 -4.3700 -1.7326 32 1 -0.4997 -3.1977 -3.0345 33 1 1.4964 -4.0267 -3.7819 34 1 2.1207 -2.7539 -2.7052 35 1 1.5223 -5.4918 -1.6042 36 1 3.0146 -5.2330 -2.5175 37 1 3.6329 -3.4560 -0.9746 38 1 3.4280 -5.0327 -0.1813 39 1 3.3817 -2.6944 1.4807 40 1 2.7981 -4.2645 2.0830 41 1 0.6517 -2.4302 2.1541 42 1 2.2670 -1.4424 6.2980 43 1 0.5670 -0.2696 7.7008 44 1 -2.4315 -0.2826 7.3638 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968735210.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:12 Heat of formation + Delta-G solvation = -17.186223 kcal Electronic energy + Delta-G solvation = -28064.313986 eV Core-core repulsion = 24210.371282 eV Total energy + Delta-G solvation = -3853.942704 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.35312 -40.62784 -39.54690 -38.56728 -36.07462 -35.22903 -34.28743 -33.51961 -32.51424 -32.32541 -28.73337 -27.43141 -26.23787 -25.45462 -25.16641 -23.63237 -21.94510 -21.17037 -20.77264 -20.21003 -19.37026 -18.76566 -17.83279 -17.28355 -17.20375 -16.71151 -16.33991 -16.10977 -15.85640 -15.49077 -15.27887 -15.19615 -14.76325 -14.72772 -14.34029 -14.16746 -13.68003 -13.39063 -13.35721 -13.14310 -12.91239 -12.90116 -12.84366 -12.72323 -12.34421 -11.99307 -11.52389 -11.44662 -11.38261 -11.32050 -11.23839 -11.17080 -10.90810 -10.87563 -10.60008 -10.34224 -9.86465 -8.51726 -7.76560 -5.19336 -0.70817 -0.34456 1.36035 1.42609 1.47370 1.52877 2.09502 2.28706 2.52312 2.54858 2.97666 3.38816 3.50028 3.62781 3.71805 3.82986 3.92549 4.06970 4.10691 4.30069 4.43716 4.48977 4.53413 4.63556 4.68876 4.76719 4.83731 4.95170 5.03744 5.09976 5.16039 5.27560 5.30363 5.41512 5.45092 5.55944 5.61241 5.70762 5.79214 5.81736 5.94497 6.45480 6.48796 6.58108 7.13067 7.28822 7.43835 8.03859 8.42414 9.26582 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013245 B = 0.004569 C = 0.004099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.421921 B = 6126.460831 C = 6829.405627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.029 4.029 3 Si 0.926 3.074 4 H -0.274 1.274 5 H -0.293 1.293 6 H -0.309 1.309 7 C -0.231 4.231 8 H 0.053 0.947 9 N -0.588 5.588 10 C 0.190 3.810 11 C -0.132 4.132 12 C -0.103 4.103 13 C -0.100 4.100 14 C -0.126 4.126 15 C 0.170 3.830 16 H 0.055 0.945 17 C 0.128 3.872 18 N -0.669 5.669 19 C 0.566 3.434 20 O -0.570 6.570 21 C -0.001 4.001 22 C -0.051 4.051 23 C -0.118 4.118 24 C 0.270 3.730 25 O -0.474 6.474 26 N -0.295 5.295 27 N -0.199 5.199 28 H 0.241 0.759 29 H -0.003 1.003 30 H 0.038 0.962 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.043 0.957 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.044 0.956 38 H 0.077 0.923 39 H 0.051 0.949 40 H 0.078 0.922 41 H 0.415 0.585 42 H 0.186 0.814 43 H 0.210 0.790 44 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.012 -8.259 10.164 13.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.226 4.226 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.220 1.220 6 H -0.237 1.237 7 C -0.362 4.362 8 H 0.071 0.929 9 N -0.310 5.310 10 C 0.065 3.935 11 C -0.171 4.171 12 C -0.141 4.141 13 C -0.138 4.138 14 C -0.167 4.167 15 C 0.062 3.938 16 H 0.073 0.927 17 C 0.003 3.997 18 N -0.316 5.316 19 C 0.349 3.651 20 O -0.450 6.450 21 C -0.149 4.149 22 C -0.079 4.079 23 C -0.148 4.148 24 C 0.085 3.915 25 O -0.284 6.284 26 N -0.148 5.148 27 N -0.048 5.048 28 H 0.051 0.949 29 H 0.015 0.985 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.061 0.939 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.063 0.937 38 H 0.095 0.905 39 H 0.070 0.930 40 H 0.096 0.904 41 H 0.252 0.748 42 H 0.203 0.797 43 H 0.227 0.773 44 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges -0.226 -7.888 9.012 11.978 hybrid contribution 0.485 1.492 0.950 1.834 sum 0.259 -6.396 9.962 11.841 Atomic orbital electron populations 1.70150 1.05451 1.24519 1.55657 1.25314 0.95549 0.99502 1.02197 0.85829 0.79078 0.83168 0.76117 1.19872 1.21963 1.23718 1.18996 0.91408 0.85436 1.40386 0.92898 1.43766 1.32288 1.01987 1.52992 1.20755 0.87130 0.95673 0.89906 1.21935 0.97417 0.99141 0.98578 1.20906 0.95826 0.99036 0.98301 1.20282 0.99713 0.97607 0.96178 1.21287 0.98373 0.99884 0.97129 1.20729 0.94934 0.88357 0.89754 0.92738 1.21664 0.91778 0.95743 0.90466 1.45753 1.18472 1.55748 1.11647 1.17665 0.85922 0.79130 0.82376 1.90707 1.21290 1.57664 1.75389 1.23029 0.94597 1.01153 0.96092 1.22665 1.02357 0.92166 0.90758 1.22926 0.91503 0.96308 1.04029 1.21309 0.90567 0.89930 0.89721 1.84709 1.46973 1.35132 1.61612 1.73028 1.26574 1.09190 1.05986 1.73368 0.99751 1.05583 1.26059 0.94883 0.98460 0.94344 0.92263 0.92276 0.91864 0.93858 0.92093 0.91794 0.93712 0.90477 0.93037 0.90375 0.74824 0.79651 0.77262 0.70528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.08 11.03 21.65 0.24 -51.84 16 2 C -0.03 -1.57 4.89 84.86 0.41 -1.16 16 3 Si 0.93 46.17 29.58 68.60 2.03 48.20 16 4 H -0.27 -13.25 7.11 99.48 0.71 -12.55 16 5 H -0.29 -14.57 7.11 99.48 0.71 -13.86 16 6 H -0.31 -16.05 7.11 99.48 0.71 -15.34 16 7 C -0.23 -11.78 7.65 84.03 0.64 -11.13 16 8 H 0.05 2.79 6.72 -2.91 -0.02 2.77 16 9 N -0.59 -26.17 1.78 -674.23 -1.20 -27.37 16 10 C 0.19 8.59 4.66 86.48 0.40 8.99 16 11 C -0.13 -4.58 5.71 30.22 0.17 -4.40 16 12 C -0.10 -3.29 5.51 29.76 0.16 -3.12 16 13 C -0.10 -2.79 5.16 28.63 0.15 -2.64 16 14 C -0.13 -3.89 5.07 29.41 0.15 -3.75 16 15 C 0.17 6.22 2.19 45.99 0.10 6.32 16 16 H 0.05 1.93 8.07 -2.39 -0.02 1.91 16 17 C 0.13 4.77 4.52 86.38 0.39 5.16 16 18 N -0.67 -27.36 4.71 -465.88 -2.19 -29.55 16 19 C 0.57 22.41 7.81 86.81 0.68 23.09 16 20 O -0.57 -23.44 16.39 -3.84 -0.06 -23.50 16 21 C 0.00 -0.03 6.83 42.00 0.29 0.26 16 22 C -0.05 -1.29 9.72 22.73 0.22 -1.07 16 23 C -0.12 -2.30 10.14 22.58 0.23 -2.07 16 24 C 0.27 6.88 7.85 84.83 0.67 7.55 16 25 O -0.47 -9.00 13.56 -88.20 -1.20 -10.20 16 26 N -0.29 -10.54 11.54 -170.01 -1.96 -12.50 16 27 N -0.20 -7.89 10.73 -48.51 -0.52 -8.41 16 28 H 0.24 13.95 8.31 -92.71 -0.77 13.17 16 29 H 0.00 -0.14 8.02 -2.38 -0.02 -0.16 16 30 H 0.04 2.00 6.40 -2.39 -0.02 1.98 16 31 H 0.06 1.89 7.32 -2.39 -0.02 1.87 16 32 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.04 1.66 7.48 -2.38 -0.02 1.64 16 35 H 0.06 1.56 7.36 -2.39 -0.02 1.55 16 36 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.08 1.97 8.11 -2.38 -0.02 1.95 16 39 H 0.05 2.14 6.83 -2.39 -0.02 2.13 16 40 H 0.08 2.54 8.14 -2.38 -0.02 2.52 16 41 H 0.41 18.69 7.43 -92.71 -0.69 18.00 16 42 H 0.19 3.83 7.71 -2.91 -0.02 3.81 16 43 H 0.21 1.88 8.06 -2.91 -0.02 1.86 16 44 H 0.43 2.96 9.06 -74.06 -0.67 2.28 16 Total: -1.00 -70.42 355.90 -0.51 -70.94 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: -0.31 Total: 22.20 kcal Atomic # 6 Polarization: 17.35 SS G_CDS: 4.67 Total: 22.02 kcal Atomic # 7 Polarization: -124.03 SS G_CDS: -5.64 Total: -129.66 kcal Atomic # 8 Polarization: -32.44 SS G_CDS: -1.26 Total: -33.70 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.20 kcal Total: -70.42 -0.51 -70.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968735210.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.750 kcal (2) G-P(sol) polarization free energy of solvation -70.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds