Wall clock time and date at job start Tue Mar 31 2020 12:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 119.99912 * 2 1 4 4 H 1.48496 * 109.47404 * 270.00056 * 3 2 1 5 5 H 1.48500 * 109.47149 * 30.00299 * 3 2 1 6 6 H 1.48504 * 109.47175 * 149.99643 * 3 2 1 7 7 C 1.38809 * 120.00231 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00263 * 164.89336 * 7 2 1 9 9 N 1.36933 * 119.99831 * 344.89316 * 7 2 1 10 10 C 1.47598 * 118.64575 * 331.38682 * 9 7 2 11 11 C 1.53942 * 112.14879 * 222.15945 * 10 9 7 12 12 C 1.50884 * 110.09463 * 40.55816 * 11 10 9 13 13 C 1.52583 * 109.19546 * 268.10248 * 12 11 10 14 14 C 1.47094 * 114.32369 * 85.26949 * 13 12 11 15 15 C 1.44583 * 118.64243 * 151.40686 * 9 7 2 16 16 H 1.09005 * 109.44697 * 209.30149 * 15 9 7 17 17 C 1.53003 * 109.42864 * 329.23129 * 15 9 7 18 18 N 1.46502 * 109.47018 * 305.12455 * 17 15 9 19 19 C 1.34776 * 119.99734 * 179.97438 * 18 17 15 20 20 O 1.21513 * 120.00425 * 359.97438 * 19 18 17 21 21 C 1.48154 * 119.99913 * 179.97438 * 19 18 17 22 22 C 1.39897 * 121.12199 * 359.71911 * 21 19 18 23 23 N 1.31763 * 119.78476 * 179.75290 * 22 21 19 24 24 N 1.28271 * 122.41823 * 0.54418 * 23 22 21 25 25 C 1.32272 * 122.43954 * 359.71764 * 24 23 22 26 26 O 1.35702 * 120.08126 * 179.97438 * 25 24 23 27 27 C 1.39231 * 119.84062 * 0.02562 * 25 24 23 28 28 H 0.96997 * 119.99831 * 359.97438 * 1 2 3 29 29 H 1.09006 * 108.94531 * 342.84378 * 10 9 7 30 30 H 1.09007 * 108.95188 * 101.46760 * 10 9 7 31 31 H 1.09000 * 109.37121 * 160.75117 * 11 10 9 32 32 H 1.09008 * 109.36830 * 280.49697 * 11 10 9 33 33 H 1.08997 * 109.48820 * 28.07805 * 12 11 10 34 34 H 1.09000 * 109.49420 * 148.15450 * 12 11 10 35 35 H 1.09001 * 108.66562 * 323.90769 * 13 12 11 36 36 H 1.09004 * 108.37052 * 206.41891 * 13 12 11 37 37 H 1.09003 * 109.33074 * 176.74350 * 14 13 12 38 38 H 1.09001 * 109.32135 * 57.09593 * 14 13 12 39 39 H 1.09002 * 109.46541 * 65.11634 * 17 15 9 40 40 H 1.08997 * 109.47350 * 185.11798 * 17 15 9 41 41 H 0.96999 * 120.00297 * 359.97438 * 18 17 15 42 42 H 1.08006 * 120.10586 * 0.02562 * 22 21 19 43 43 H 0.96705 * 114.00340 * 270.02016 * 26 25 24 44 44 H 1.07996 * 121.12214 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0623 -1.2182 -0.2443 9 7 1.3612 -2.3676 0.3080 10 6 0.1980 -2.3110 1.2148 11 6 0.2043 -3.4599 2.2393 12 6 1.6058 -3.6942 2.7469 13 6 2.2823 -4.7532 1.8814 14 6 2.9140 -4.2261 0.6621 15 6 1.8438 -3.6030 -0.2676 16 1 1.0127 -4.2991 -0.3821 17 6 2.4624 -3.3186 -1.6377 18 7 1.4867 -2.6209 -2.4788 19 6 1.8135 -2.2659 -3.7372 20 8 2.9176 -2.5241 -4.1741 21 6 0.8265 -1.5608 -4.5880 22 6 -0.4531 -1.2571 -4.1110 23 7 -1.3084 -0.6248 -4.8887 24 7 -1.0195 -0.2774 -6.0891 25 6 0.1604 -0.5229 -6.6343 26 8 0.4146 -0.1342 -7.9094 27 6 1.1405 -1.1821 -5.8972 28 1 -0.4850 0.8400 0.0004 29 1 0.2113 -1.3607 1.7487 30 1 -0.7155 -2.3696 0.6229 31 1 -0.4447 -3.2017 3.0761 32 1 -0.1630 -4.3698 1.7645 33 1 2.1715 -2.7640 2.6949 34 1 1.5656 -4.0387 3.7802 35 1 1.5379 -5.4952 1.5925 36 1 3.0461 -5.2496 2.4801 37 1 3.4192 -5.0374 0.1379 38 1 3.6434 -3.4633 0.9347 39 1 3.3475 -2.6945 -1.5142 40 1 2.7441 -4.2589 -2.1115 41 1 0.6054 -2.4144 -2.1300 42 1 -0.7374 -1.5360 -3.1071 43 1 0.1894 -0.7983 -8.5754 44 1 2.1110 -1.3927 -6.3216 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968904800.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:42 Heat of formation + Delta-G solvation = 4.150476 kcal Electronic energy + Delta-G solvation = -28092.789032 eV Core-core repulsion = 24239.771557 eV Total energy + Delta-G solvation = -3853.017475 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.23483 -39.30346 -38.13840 -37.63241 -34.71577 -33.61296 -33.26296 -31.91828 -31.23978 -30.76477 -27.42093 -26.01616 -24.82286 -24.42980 -23.55135 -22.23202 -20.67042 -19.87707 -19.30932 -18.92289 -17.97405 -17.31986 -16.40623 -16.11762 -15.68517 -15.56546 -15.20707 -14.71631 -14.63761 -14.16018 -13.97784 -13.63912 -13.53757 -13.39743 -13.05032 -12.87993 -12.33759 -12.17652 -12.06970 -11.62013 -11.37097 -11.28480 -11.17167 -10.90531 -10.68293 -10.28662 -10.21446 -10.19625 -10.10110 -10.06060 -9.77848 -9.77146 -9.65462 -9.61053 -9.32969 -8.52963 -8.47147 -6.79746 -5.92474 -3.37853 0.35640 0.75372 2.88043 3.24222 3.29996 3.38893 3.40814 3.43855 3.73449 4.25726 4.39152 4.46689 4.76630 4.82203 5.05712 5.10659 5.25807 5.36658 5.38937 5.56211 5.61111 5.79605 5.82342 5.91249 5.95758 5.98158 6.05555 6.18019 6.31567 6.46947 6.51844 6.57667 6.60098 6.67385 6.77589 6.89497 6.92900 7.05710 7.15368 7.32473 7.57966 7.73408 7.94695 8.33100 8.51424 8.61185 9.10674 9.74596 10.19932 11.13860 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013876 B = 0.004509 C = 0.004013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.384566 B = 6207.651773 C = 6974.951534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.015 3.985 3 Si 0.889 3.111 4 H -0.289 1.289 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.255 4.255 8 H 0.062 0.938 9 N -0.584 5.584 10 C 0.180 3.820 11 C -0.143 4.143 12 C -0.107 4.107 13 C -0.101 4.101 14 C -0.136 4.136 15 C 0.172 3.828 16 H 0.047 0.953 17 C 0.128 3.872 18 N -0.673 5.673 19 C 0.555 3.445 20 O -0.547 6.547 21 C -0.103 4.103 22 C 0.075 3.925 23 N -0.214 5.214 24 N -0.250 5.250 25 C 0.247 3.753 26 O -0.472 6.472 27 C -0.083 4.083 28 H 0.255 0.745 29 H 0.073 0.927 30 H 0.025 0.975 31 H 0.049 0.951 32 H 0.044 0.956 33 H 0.074 0.926 34 H 0.039 0.961 35 H 0.047 0.953 36 H 0.040 0.960 37 H 0.049 0.951 38 H 0.064 0.936 39 H 0.073 0.927 40 H 0.056 0.944 41 H 0.413 0.587 42 H 0.188 0.812 43 H 0.403 0.597 44 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.019 -8.414 -5.038 9.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.184 4.184 3 Si 0.719 3.281 4 H -0.216 1.216 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.385 4.385 8 H 0.080 0.920 9 N -0.306 5.306 10 C 0.055 3.945 11 C -0.182 4.182 12 C -0.145 4.145 13 C -0.139 4.139 14 C -0.177 4.177 15 C 0.063 3.937 16 H 0.064 0.936 17 C 0.004 3.996 18 N -0.322 5.322 19 C 0.338 3.662 20 O -0.427 6.427 21 C -0.117 4.117 22 C -0.091 4.091 23 N -0.058 5.058 24 N -0.102 5.102 25 C 0.061 3.939 26 O -0.277 6.277 27 C -0.114 4.114 28 H 0.065 0.935 29 H 0.091 0.909 30 H 0.044 0.956 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.092 0.908 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.068 0.932 38 H 0.083 0.917 39 H 0.092 0.908 40 H 0.074 0.926 41 H 0.251 0.749 42 H 0.205 0.795 43 H 0.261 0.739 44 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -0.613 -7.301 -5.290 9.037 hybrid contribution 1.418 0.223 0.228 1.453 sum 0.805 -7.078 -5.062 8.739 Atomic orbital electron populations 1.69985 1.04899 1.25706 1.53705 1.24913 0.95167 0.97898 1.00411 0.86516 0.79457 0.84389 0.77755 1.21602 1.21542 1.20546 1.18995 0.92170 0.84595 1.42721 0.92010 1.43730 1.34339 1.01714 1.50855 1.21006 0.88453 0.95507 0.89493 1.22074 0.96109 1.00451 0.99596 1.20957 0.97115 0.99787 0.96598 1.20292 0.99056 0.97909 0.96608 1.21370 0.99583 0.99759 0.96947 1.20533 0.94174 0.89583 0.89375 0.93551 1.21614 0.92481 0.95173 0.90377 1.45620 1.18874 1.56359 1.11347 1.17748 0.86380 0.79638 0.82398 1.90738 1.21878 1.56166 1.73887 1.21414 0.95957 0.99445 0.94923 1.24807 0.89876 0.92785 1.01595 1.73076 1.27873 1.07431 0.97372 1.72761 1.17264 1.13950 1.06239 1.20749 0.90700 0.94200 0.88276 1.84824 1.85354 1.45288 1.12240 1.22711 1.01592 0.93481 0.93635 0.93475 0.90875 0.95641 0.93219 0.93771 0.90751 0.94172 0.93477 0.94096 0.93247 0.91729 0.90848 0.92615 0.74934 0.79527 0.73876 0.81746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.35 11.13 55.49 0.62 -21.74 16 2 C 0.02 0.38 4.87 -17.43 -0.08 0.29 16 3 Si 0.89 20.74 29.58 -169.99 -5.03 15.71 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.26 -5.87 7.60 -15.06 -0.11 -5.98 16 8 H 0.06 1.50 6.76 -52.49 -0.35 1.14 16 9 N -0.58 -11.67 1.77 -164.47 -0.29 -11.96 16 10 C 0.18 3.62 4.66 -2.95 -0.01 3.61 16 11 C -0.14 -2.37 5.71 -27.30 -0.16 -2.53 16 12 C -0.11 -1.70 5.52 -28.01 -0.15 -1.85 16 13 C -0.10 -1.47 5.14 -29.78 -0.15 -1.62 16 14 C -0.14 -2.09 5.07 -28.59 -0.14 -2.23 16 15 C 0.17 2.92 2.19 -67.97 -0.15 2.77 16 16 H 0.05 0.77 8.06 -51.93 -0.42 0.35 16 17 C 0.13 2.19 4.53 -4.04 -0.02 2.17 16 18 N -0.67 -11.75 4.67 -61.15 -0.29 -12.04 16 19 C 0.55 9.87 7.80 -12.19 -0.10 9.77 16 20 O -0.55 -10.90 16.49 5.35 0.09 -10.81 16 21 C -0.10 -1.65 5.92 -104.60 -0.62 -2.27 16 22 C 0.07 1.20 10.84 -16.96 -0.18 1.02 16 23 N -0.21 -3.66 11.48 30.79 0.35 -3.31 16 24 N -0.25 -4.10 11.50 30.48 0.35 -3.75 16 25 C 0.25 3.49 7.85 -16.99 -0.13 3.36 16 26 O -0.47 -5.31 13.57 -18.81 -0.26 -5.56 16 27 C -0.08 -1.19 9.72 -38.61 -0.38 -1.57 16 28 H 0.26 6.45 8.31 -40.82 -0.34 6.11 16 29 H 0.07 1.70 6.47 -51.93 -0.34 1.36 16 30 H 0.03 0.55 8.01 -51.93 -0.42 0.13 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.04 0.69 7.30 -51.92 -0.38 0.31 16 33 H 0.07 1.37 7.48 -51.93 -0.39 0.98 16 34 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.05 0.65 7.34 -51.93 -0.38 0.27 16 36 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.05 0.67 8.11 -51.93 -0.42 0.25 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 39 H 0.07 1.41 6.85 -51.93 -0.36 1.06 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.41 7.32 6.22 -40.82 -0.25 7.07 16 42 H 0.19 2.90 6.53 -52.48 -0.34 2.56 16 43 H 0.40 2.17 9.06 45.56 0.41 2.58 16 44 H 0.16 2.11 7.79 -52.49 -0.41 1.70 16 LS Contribution 353.94 15.07 5.33 5.33 Total: -1.00 -28.00 353.94 -6.80 -34.81 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -5.29 Total: 8.38 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: -2.40 Total: 4.94 kcal Atomic # 7 Polarization: -53.53 SS G_CDS: 0.75 Total: -52.79 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: -0.17 Total: -16.38 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.03 Total: 15.71 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -28.00 -6.80 -34.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968904800.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.957 kcal (2) G-P(sol) polarization free energy of solvation -28.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds