Wall clock time and date at job start Tue Mar 31 2020 12:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 119.99912 * 2 1 4 4 H 1.48496 * 109.47404 * 270.00056 * 3 2 1 5 5 H 1.48500 * 109.47149 * 30.00299 * 3 2 1 6 6 H 1.48504 * 109.47175 * 149.99643 * 3 2 1 7 7 C 1.38809 * 120.00231 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00263 * 164.89336 * 7 2 1 9 9 N 1.36933 * 119.99831 * 344.89316 * 7 2 1 10 10 C 1.47598 * 118.64575 * 331.38682 * 9 7 2 11 11 C 1.53942 * 112.14879 * 222.15945 * 10 9 7 12 12 C 1.50884 * 110.09463 * 40.55816 * 11 10 9 13 13 C 1.52583 * 109.19546 * 268.10248 * 12 11 10 14 14 C 1.47094 * 114.32369 * 85.26949 * 13 12 11 15 15 C 1.44583 * 118.64243 * 151.40686 * 9 7 2 16 16 H 1.09005 * 109.44697 * 209.30149 * 15 9 7 17 17 C 1.53003 * 109.42864 * 329.23129 * 15 9 7 18 18 N 1.46502 * 109.47018 * 305.12455 * 17 15 9 19 19 C 1.34776 * 119.99734 * 179.97438 * 18 17 15 20 20 O 1.21513 * 120.00425 * 359.97438 * 19 18 17 21 21 C 1.48154 * 119.99913 * 179.97438 * 19 18 17 22 22 C 1.39897 * 121.12199 * 359.71911 * 21 19 18 23 23 N 1.31763 * 119.78476 * 179.75290 * 22 21 19 24 24 N 1.28271 * 122.41823 * 0.54418 * 23 22 21 25 25 C 1.32272 * 122.43954 * 359.71764 * 24 23 22 26 26 O 1.35702 * 120.08126 * 179.97438 * 25 24 23 27 27 C 1.39231 * 119.84062 * 0.02562 * 25 24 23 28 28 H 0.96997 * 119.99831 * 359.97438 * 1 2 3 29 29 H 1.09006 * 108.94531 * 342.84378 * 10 9 7 30 30 H 1.09007 * 108.95188 * 101.46760 * 10 9 7 31 31 H 1.09000 * 109.37121 * 160.75117 * 11 10 9 32 32 H 1.09008 * 109.36830 * 280.49697 * 11 10 9 33 33 H 1.08997 * 109.48820 * 28.07805 * 12 11 10 34 34 H 1.09000 * 109.49420 * 148.15450 * 12 11 10 35 35 H 1.09001 * 108.66562 * 323.90769 * 13 12 11 36 36 H 1.09004 * 108.37052 * 206.41891 * 13 12 11 37 37 H 1.09003 * 109.33074 * 176.74350 * 14 13 12 38 38 H 1.09001 * 109.32135 * 57.09593 * 14 13 12 39 39 H 1.09002 * 109.46541 * 65.11634 * 17 15 9 40 40 H 1.08997 * 109.47350 * 185.11798 * 17 15 9 41 41 H 0.96999 * 120.00297 * 359.97438 * 18 17 15 42 42 H 1.08006 * 120.10586 * 0.02562 * 22 21 19 43 43 H 0.96705 * 114.00340 * 270.02016 * 26 25 24 44 44 H 1.07996 * 121.12214 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0623 -1.2182 -0.2443 9 7 1.3612 -2.3676 0.3080 10 6 0.1980 -2.3110 1.2148 11 6 0.2043 -3.4599 2.2393 12 6 1.6058 -3.6942 2.7469 13 6 2.2823 -4.7532 1.8814 14 6 2.9140 -4.2261 0.6621 15 6 1.8438 -3.6030 -0.2676 16 1 1.0127 -4.2991 -0.3821 17 6 2.4624 -3.3186 -1.6377 18 7 1.4867 -2.6209 -2.4788 19 6 1.8135 -2.2659 -3.7372 20 8 2.9176 -2.5241 -4.1741 21 6 0.8265 -1.5608 -4.5880 22 6 -0.4531 -1.2571 -4.1110 23 7 -1.3084 -0.6248 -4.8887 24 7 -1.0195 -0.2774 -6.0891 25 6 0.1604 -0.5229 -6.6343 26 8 0.4146 -0.1342 -7.9094 27 6 1.1405 -1.1821 -5.8972 28 1 -0.4850 0.8400 0.0004 29 1 0.2113 -1.3607 1.7487 30 1 -0.7155 -2.3696 0.6229 31 1 -0.4447 -3.2017 3.0761 32 1 -0.1630 -4.3698 1.7645 33 1 2.1715 -2.7640 2.6949 34 1 1.5656 -4.0387 3.7802 35 1 1.5379 -5.4952 1.5925 36 1 3.0461 -5.2496 2.4801 37 1 3.4192 -5.0374 0.1379 38 1 3.6434 -3.4633 0.9347 39 1 3.3475 -2.6945 -1.5142 40 1 2.7441 -4.2589 -2.1115 41 1 0.6054 -2.4144 -2.1300 42 1 -0.7374 -1.5360 -3.1071 43 1 0.1894 -0.7983 -8.5754 44 1 2.1110 -1.3927 -6.3216 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968904800.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:41 Heat of formation + Delta-G solvation = -16.496935 kcal Electronic energy + Delta-G solvation = -28093.684371 eV Core-core repulsion = 24239.771557 eV Total energy + Delta-G solvation = -3853.912814 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.45726 -40.70438 -39.55324 -38.66309 -36.10874 -35.24080 -34.54742 -33.25172 -32.50672 -32.38123 -28.87777 -27.53916 -26.13778 -25.63587 -25.17104 -23.59335 -22.00997 -21.19670 -20.77878 -20.12749 -19.25689 -18.57314 -17.88289 -17.40548 -17.19090 -16.85304 -16.65636 -16.21796 -16.00753 -15.73824 -15.25161 -15.18243 -14.86452 -14.62823 -14.49168 -14.27291 -13.69659 -13.39294 -13.31083 -13.15786 -12.92186 -12.83658 -12.71151 -12.51377 -12.37893 -12.01485 -11.58000 -11.52584 -11.46403 -11.36765 -11.28416 -11.17359 -10.95216 -10.93263 -10.60322 -10.34760 -9.92679 -8.52659 -7.79540 -5.22116 -0.88582 -0.40120 1.37612 1.46393 1.48155 1.58215 2.01361 2.22863 2.46327 2.51929 3.03826 3.24368 3.36036 3.48236 3.62774 3.68328 3.95678 4.07719 4.11679 4.29708 4.37112 4.46471 4.53325 4.64224 4.65596 4.70293 4.82865 4.84748 5.04769 5.10744 5.16929 5.26495 5.30662 5.41787 5.45338 5.53498 5.59921 5.71267 5.79204 5.82352 5.94260 6.43546 6.48191 6.52661 7.09497 7.28113 7.39642 8.02365 8.40644 9.22934 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013876 B = 0.004509 C = 0.004013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.384566 B = 6207.651773 C = 6974.951534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.020 4.020 3 Si 0.919 3.081 4 H -0.303 1.303 5 H -0.297 1.297 6 H -0.281 1.281 7 C -0.231 4.231 8 H 0.050 0.950 9 N -0.588 5.588 10 C 0.189 3.811 11 C -0.133 4.133 12 C -0.104 4.104 13 C -0.101 4.101 14 C -0.128 4.128 15 C 0.171 3.829 16 H 0.062 0.938 17 C 0.130 3.870 18 N -0.674 5.674 19 C 0.556 3.444 20 O -0.570 6.570 21 C -0.113 4.113 22 C 0.075 3.925 23 N -0.234 5.234 24 N -0.270 5.270 25 C 0.263 3.737 26 O -0.471 6.471 27 C -0.072 4.072 28 H 0.245 0.755 29 H 0.036 0.964 30 H 0.008 0.992 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.042 0.958 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.075 0.925 38 H 0.042 0.958 39 H 0.049 0.951 40 H 0.078 0.922 41 H 0.411 0.589 42 H 0.187 0.813 43 H 0.431 0.569 44 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.486 -10.500 -5.449 11.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.217 4.217 3 Si 0.751 3.249 4 H -0.231 1.231 5 H -0.224 1.224 6 H -0.206 1.206 7 C -0.362 4.362 8 H 0.068 0.932 9 N -0.310 5.310 10 C 0.064 3.936 11 C -0.172 4.172 12 C -0.142 4.142 13 C -0.138 4.138 14 C -0.169 4.169 15 C 0.063 3.937 16 H 0.080 0.920 17 C 0.006 3.994 18 N -0.322 5.322 19 C 0.341 3.659 20 O -0.452 6.452 21 C -0.127 4.127 22 C -0.091 4.091 23 N -0.077 5.077 24 N -0.122 5.122 25 C 0.076 3.924 26 O -0.280 6.280 27 C -0.103 4.103 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.026 0.974 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.061 0.939 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.061 0.939 39 H 0.068 0.932 40 H 0.096 0.904 41 H 0.249 0.751 42 H 0.203 0.797 43 H 0.294 0.706 44 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -0.146 -9.421 -5.711 11.018 hybrid contribution 1.337 0.845 0.268 1.605 sum 1.192 -8.576 -5.442 10.227 Atomic orbital electron populations 1.70056 1.05097 1.24908 1.55613 1.25166 0.95502 0.98928 1.02101 0.86041 0.78776 0.83462 0.76585 1.23072 1.22411 1.20618 1.18930 0.91542 0.85574 1.40190 0.93247 1.43772 1.33999 1.01982 1.51283 1.20784 0.87669 0.95453 0.89697 1.21949 0.97090 0.99370 0.98779 1.20919 0.96091 0.98931 0.98248 1.20278 0.99872 0.97616 0.96046 1.21286 0.98509 0.99818 0.97240 1.20726 0.95142 0.88368 0.89421 0.91993 1.21631 0.91501 0.95576 0.90723 1.45674 1.18800 1.56269 1.11418 1.17935 0.86298 0.79230 0.82451 1.90718 1.22838 1.57253 1.74352 1.21300 0.95592 1.00281 0.95576 1.24739 0.89931 0.92888 1.01526 1.73025 1.28560 1.08169 0.97926 1.72687 1.18566 1.14815 1.06180 1.20723 0.89700 0.92730 0.89252 1.84784 1.85202 1.46473 1.11546 1.22910 1.02199 0.92418 0.92806 0.94489 0.94566 0.97436 0.92358 0.92009 0.93947 0.92137 0.91883 0.92208 0.90615 0.93933 0.93239 0.90403 0.75102 0.79657 0.70642 0.80055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.52 11.13 21.65 0.24 -46.28 16 2 C -0.02 -0.99 4.87 84.86 0.41 -0.58 16 3 Si 0.92 43.48 29.58 68.60 2.03 45.51 16 4 H -0.30 -14.87 7.11 99.48 0.71 -14.16 16 5 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 6 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 7 C -0.23 -10.77 7.60 84.03 0.64 -10.13 16 8 H 0.05 2.43 6.76 -2.91 -0.02 2.41 16 9 N -0.59 -23.32 1.77 -674.26 -1.19 -24.51 16 10 C 0.19 7.58 4.66 86.49 0.40 7.98 16 11 C -0.13 -4.14 5.71 30.22 0.17 -3.97 16 12 C -0.10 -3.07 5.52 29.77 0.16 -2.90 16 13 C -0.10 -2.56 5.14 28.62 0.15 -2.42 16 14 C -0.13 -3.61 5.07 29.39 0.15 -3.46 16 15 C 0.17 5.51 2.19 45.98 0.10 5.61 16 16 H 0.06 1.86 8.06 -2.38 -0.02 1.84 16 17 C 0.13 4.30 4.53 86.38 0.39 4.69 16 18 N -0.67 -23.22 4.67 -465.67 -2.18 -25.40 16 19 C 0.56 19.50 7.80 86.88 0.68 20.18 16 20 O -0.57 -22.27 16.49 -3.76 -0.06 -22.33 16 21 C -0.11 -3.57 5.92 -19.85 -0.12 -3.69 16 22 C 0.08 2.43 10.84 85.11 0.92 3.35 16 23 N -0.23 -8.00 11.48 -56.51 -0.65 -8.65 16 24 N -0.27 -8.66 11.50 -170.31 -1.96 -10.62 16 25 C 0.26 7.00 7.85 84.87 0.67 7.66 16 26 O -0.47 -9.37 13.57 -90.22 -1.22 -10.60 16 27 C -0.07 -1.96 9.72 22.90 0.22 -1.74 16 28 H 0.25 12.81 8.31 -92.71 -0.77 12.04 16 29 H 0.04 1.71 6.47 -2.38 -0.02 1.70 16 30 H 0.01 0.33 8.01 -2.38 -0.02 0.31 16 31 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.06 1.73 7.30 -2.38 -0.02 1.71 16 33 H 0.04 1.52 7.48 -2.39 -0.02 1.51 16 34 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.06 1.45 7.34 -2.39 -0.02 1.43 16 36 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 37 H 0.08 1.77 8.11 -2.39 -0.02 1.75 16 38 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.05 1.89 6.85 -2.39 -0.02 1.87 16 40 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 41 H 0.41 14.57 6.22 -92.71 -0.58 13.99 16 42 H 0.19 5.91 6.53 -2.91 -0.02 5.89 16 43 H 0.43 3.31 9.06 -74.05 -0.67 2.64 16 44 H 0.18 4.27 7.79 -2.91 -0.02 4.25 16 Total: -1.00 -60.80 353.94 -0.24 -61.04 By element: Atomic # 1 Polarization: 21.45 SS G_CDS: -0.20 Total: 21.25 kcal Atomic # 6 Polarization: 15.64 SS G_CDS: 4.95 Total: 20.59 kcal Atomic # 7 Polarization: -109.73 SS G_CDS: -5.73 Total: -115.46 kcal Atomic # 8 Polarization: -31.64 SS G_CDS: -1.29 Total: -32.93 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -60.80 -0.24 -61.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968904800.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.542 kcal (2) G-P(sol) polarization free energy of solvation -60.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds