Wall clock time and date at job start Tue Mar 31 2020 12:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86805 * 119.99775 * 2 1 4 4 H 1.48498 * 109.47179 * 240.00339 * 3 2 1 5 5 H 1.48504 * 109.46915 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47004 * 119.99943 * 3 2 1 7 7 C 1.38811 * 120.00469 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00388 * 194.55843 * 7 2 1 9 9 N 1.36942 * 119.99634 * 14.54926 * 7 2 1 10 10 C 1.47606 * 118.64103 * 27.76664 * 9 7 2 11 11 C 1.53940 * 112.14028 * 137.85947 * 10 9 7 12 12 C 1.50878 * 110.09838 * 319.43669 * 11 10 9 13 13 C 1.52571 * 109.34851 * 91.89131 * 12 11 10 14 14 C 1.47047 * 114.28935 * 274.93786 * 13 12 11 15 15 C 1.44573 * 118.63838 * 207.74305 * 9 7 2 16 16 H 1.09006 * 109.45193 * 150.70631 * 15 9 7 17 17 C 1.52997 * 109.45517 * 30.75619 * 15 9 7 18 18 N 1.46507 * 109.46927 * 54.94799 * 17 15 9 19 19 C 1.34768 * 120.00414 * 180.02562 * 18 17 15 20 20 O 1.21517 * 119.99846 * 359.97438 * 19 18 17 21 21 C 1.48146 * 120.00270 * 179.72388 * 19 18 17 22 22 C 1.39898 * 121.12238 * 0.27371 * 21 19 18 23 23 N 1.31763 * 119.78807 * 180.02562 * 22 21 19 24 24 N 1.28271 * 122.41769 * 359.97438 * 23 22 21 25 25 C 1.32277 * 122.44150 * 0.02562 * 24 23 22 26 26 O 1.35698 * 120.08370 * 179.97438 * 25 24 23 27 27 C 1.39237 * 119.83484 * 359.72090 * 25 24 23 28 28 H 0.97000 * 120.00770 * 359.97438 * 1 2 3 29 29 H 1.08999 * 108.94298 * 258.54398 * 10 9 7 30 30 H 1.08993 * 108.94411 * 17.26397 * 10 9 7 31 31 H 1.09005 * 109.37105 * 79.62989 * 11 10 9 32 32 H 1.09004 * 109.36517 * 199.36923 * 11 10 9 33 33 H 1.09004 * 109.49110 * 211.84783 * 12 11 10 34 34 H 1.08992 * 109.49238 * 331.90290 * 12 11 10 35 35 H 1.09000 * 108.51360 * 36.22335 * 13 12 11 36 36 H 1.08992 * 108.51336 * 153.87818 * 13 12 11 37 37 H 1.09004 * 109.37412 * 302.59425 * 14 13 12 38 38 H 1.09000 * 109.28855 * 183.11484 * 14 13 12 39 39 H 1.09000 * 109.47528 * 294.95087 * 17 15 9 40 40 H 1.08995 * 109.47609 * 174.94153 * 17 15 9 41 41 H 0.97010 * 119.99508 * 0.02562 * 18 17 15 42 42 H 1.07997 * 120.10487 * 359.97438 * 22 21 19 43 43 H 0.96698 * 114.00422 * 90.00236 * 26 25 24 44 44 H 1.07997 * 121.11986 * 180.30474 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6966 -1.2125 5 1 1.2850 2.7465 0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0643 -1.2172 0.2345 9 7 1.3585 -2.3689 -0.2990 10 6 0.1763 -2.3133 -1.1810 11 6 0.1647 -3.4594 -2.2087 12 6 1.5559 -3.6878 -2.7462 13 6 2.2570 -4.7465 -1.9004 14 6 2.9096 -4.2207 -0.6921 15 6 1.8572 -3.6043 0.2625 16 1 1.0312 -4.3036 0.3922 17 6 2.5041 -3.3225 1.6200 18 7 1.5438 -2.6322 2.4847 19 6 1.8960 -2.2806 3.7371 20 8 3.0100 -2.5367 4.1494 21 6 0.9269 -1.5771 4.6093 22 6 -0.3617 -1.2712 4.1589 23 7 -1.2024 -0.6442 4.9567 24 7 -0.8873 -0.2954 6.1502 25 6 0.3048 -0.5385 6.6692 26 8 0.5871 -0.1475 7.9376 27 6 1.2677 -1.2011 5.9126 28 1 -0.4851 0.8400 0.0004 29 1 -0.7242 -2.3765 -0.5702 30 1 0.1765 -1.3622 -1.7134 31 1 -0.1918 -4.3712 -1.7294 32 1 -0.5009 -3.1999 -3.0320 33 1 1.4949 -4.0296 -3.7795 34 1 2.1197 -2.7560 -2.7039 35 1 1.5214 -5.4929 -1.6005 36 1 3.0134 -5.2349 -2.5146 37 1 3.6320 -3.4552 -0.9753 38 1 3.4287 -5.0317 -0.1814 39 1 3.3838 -2.6944 1.4800 40 1 2.7996 -4.2635 2.0841 41 1 0.6543 -2.4282 2.1556 42 1 -0.6663 -1.5472 3.1602 43 1 0.3782 -0.8109 8.6094 44 1 2.2460 -1.4146 6.3173 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968904801.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:44 Heat of formation + Delta-G solvation = -16.034513 kcal Electronic energy + Delta-G solvation = -28087.755138 eV Core-core repulsion = 24233.862376 eV Total energy + Delta-G solvation = -3853.892762 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.45748 -40.70653 -39.55401 -38.66350 -36.11040 -35.24991 -34.54875 -33.25361 -32.50315 -32.37933 -28.88123 -27.54309 -26.13974 -25.63584 -25.16913 -23.59614 -22.01268 -21.19289 -20.77569 -20.12919 -19.25792 -18.57701 -17.88498 -17.40588 -17.19630 -16.85168 -16.65727 -16.21458 -16.00712 -15.73896 -15.25058 -15.18186 -14.86601 -14.62833 -14.49253 -14.27580 -13.68954 -13.39334 -13.30994 -13.16822 -12.90327 -12.81803 -12.71346 -12.51365 -12.40344 -12.01422 -11.58248 -11.52010 -11.46457 -11.36482 -11.29191 -11.17545 -10.95409 -10.93160 -10.60314 -10.33623 -9.93151 -8.53681 -7.79043 -5.21292 -0.88653 -0.40146 1.39506 1.46193 1.47025 1.57910 2.01291 2.22881 2.46263 2.52125 3.03801 3.24226 3.36296 3.48053 3.62763 3.68265 3.95634 4.07655 4.11543 4.29671 4.37058 4.46455 4.53178 4.64304 4.65585 4.70237 4.82818 4.84612 5.04612 5.10562 5.17084 5.26391 5.30781 5.41864 5.45430 5.53308 5.59927 5.71513 5.79067 5.82438 5.95523 6.43648 6.47954 6.52349 7.09210 7.28220 7.39668 8.02700 8.40416 9.23386 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013855 B = 0.004508 C = 0.004010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.412107 B = 6210.350091 C = 6980.025304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.021 4.021 3 Si 0.920 3.080 4 H -0.286 1.286 5 H -0.300 1.300 6 H -0.294 1.294 7 C -0.232 4.232 8 H 0.051 0.949 9 N -0.588 5.588 10 C 0.189 3.811 11 C -0.133 4.133 12 C -0.104 4.104 13 C -0.101 4.101 14 C -0.128 4.128 15 C 0.171 3.829 16 H 0.062 0.938 17 C 0.130 3.870 18 N -0.674 5.674 19 C 0.556 3.444 20 O -0.570 6.570 21 C -0.113 4.113 22 C 0.075 3.925 23 N -0.234 5.234 24 N -0.270 5.270 25 C 0.263 3.737 26 O -0.471 6.471 27 C -0.072 4.072 28 H 0.245 0.755 29 H 0.007 0.993 30 H 0.038 0.962 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.041 0.959 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.042 0.958 38 H 0.075 0.925 39 H 0.049 0.951 40 H 0.078 0.922 41 H 0.411 0.589 42 H 0.187 0.813 43 H 0.431 0.569 44 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.617 -10.484 5.566 11.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.218 4.218 3 Si 0.752 3.248 4 H -0.213 1.213 5 H -0.227 1.227 6 H -0.221 1.221 7 C -0.363 4.363 8 H 0.068 0.932 9 N -0.311 5.311 10 C 0.064 3.936 11 C -0.172 4.172 12 C -0.142 4.142 13 C -0.138 4.138 14 C -0.169 4.169 15 C 0.064 3.936 16 H 0.080 0.920 17 C 0.006 3.994 18 N -0.322 5.322 19 C 0.341 3.659 20 O -0.452 6.452 21 C -0.127 4.127 22 C -0.091 4.091 23 N -0.077 5.077 24 N -0.122 5.122 25 C 0.076 3.924 26 O -0.280 6.280 27 C -0.103 4.103 28 H 0.055 0.945 29 H 0.025 0.975 30 H 0.056 0.944 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.060 0.940 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.061 0.939 38 H 0.094 0.906 39 H 0.067 0.933 40 H 0.096 0.904 41 H 0.249 0.751 42 H 0.204 0.796 43 H 0.294 0.706 44 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -0.017 -9.404 5.850 11.076 hybrid contribution 1.354 0.829 -0.306 1.617 sum 1.338 -8.575 5.544 10.299 Atomic orbital electron populations 1.70051 1.05093 1.24965 1.55717 1.25159 0.95518 0.98932 1.02167 0.86095 0.78156 0.83090 0.77440 1.21267 1.22672 1.22123 1.18930 0.91434 0.85530 1.40364 0.93163 1.43781 1.32317 1.01889 1.53084 1.20796 0.87290 0.95550 0.89973 1.21948 0.97102 0.99412 0.98741 1.20911 0.96094 0.98933 0.98244 1.20264 0.99690 0.97642 0.96197 1.21281 0.98515 0.99846 0.97233 1.20720 0.94998 0.88370 0.89552 0.91972 1.21631 0.91758 0.95693 0.90349 1.45674 1.18364 1.56606 1.11542 1.17937 0.86328 0.79208 0.82437 1.90720 1.21946 1.57221 1.75285 1.21291 0.95549 1.00288 0.95596 1.24739 0.90041 0.92897 1.01424 1.73029 1.28824 1.08184 0.97632 1.72690 1.17871 1.14771 1.06905 1.20724 0.89634 0.92698 0.89331 1.84782 1.84867 1.46403 1.11959 1.22913 1.02335 0.92428 0.92643 0.94481 0.97463 0.94366 0.92014 0.92397 0.92173 0.93998 0.91873 0.92174 0.93942 0.90644 0.93258 0.90394 0.75113 0.79645 0.70643 0.80063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.71 11.03 21.65 0.24 -46.47 16 2 C -0.02 -1.04 4.89 84.86 0.41 -0.63 16 3 Si 0.92 43.50 29.58 68.60 2.03 45.53 16 4 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 5 H -0.30 -14.59 7.11 99.48 0.71 -13.89 16 6 H -0.29 -14.24 7.11 99.48 0.71 -13.54 16 7 C -0.23 -10.79 7.65 84.03 0.64 -10.15 16 8 H 0.05 2.47 6.71 -2.91 -0.02 2.45 16 9 N -0.59 -23.36 1.78 -674.26 -1.20 -24.56 16 10 C 0.19 7.60 4.66 86.48 0.40 8.00 16 11 C -0.13 -4.16 5.71 30.22 0.17 -3.99 16 12 C -0.10 -3.08 5.51 29.76 0.16 -2.91 16 13 C -0.10 -2.57 5.15 28.60 0.15 -2.42 16 14 C -0.13 -3.62 5.06 29.38 0.15 -3.47 16 15 C 0.17 5.51 2.19 45.99 0.10 5.62 16 16 H 0.06 1.87 8.07 -2.38 -0.02 1.85 16 17 C 0.13 4.29 4.53 86.38 0.39 4.69 16 18 N -0.67 -23.15 4.68 -465.69 -2.18 -25.33 16 19 C 0.56 19.43 7.80 86.88 0.68 20.11 16 20 O -0.57 -22.25 16.49 -3.77 -0.06 -22.31 16 21 C -0.11 -3.54 5.92 -19.85 -0.12 -3.66 16 22 C 0.08 2.40 10.84 85.11 0.92 3.33 16 23 N -0.23 -7.95 11.48 -56.51 -0.65 -8.60 16 24 N -0.27 -8.61 11.50 -170.30 -1.96 -10.57 16 25 C 0.26 6.96 7.85 84.87 0.67 7.62 16 26 O -0.47 -9.31 13.57 -90.17 -1.22 -10.53 16 27 C -0.07 -1.94 9.72 22.90 0.22 -1.72 16 28 H 0.25 12.87 8.31 -92.71 -0.77 12.10 16 29 H 0.01 0.32 8.02 -2.39 -0.02 0.30 16 30 H 0.04 1.82 6.40 -2.39 -0.02 1.80 16 31 H 0.06 1.73 7.32 -2.38 -0.02 1.72 16 32 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 33 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.04 1.51 7.48 -2.39 -0.02 1.50 16 35 H 0.06 1.46 7.36 -2.39 -0.02 1.44 16 36 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.08 1.76 8.11 -2.39 -0.02 1.74 16 39 H 0.05 1.88 6.83 -2.39 -0.02 1.87 16 40 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 41 H 0.41 14.48 6.23 -92.70 -0.58 13.91 16 42 H 0.19 5.86 6.53 -2.91 -0.02 5.84 16 43 H 0.43 3.26 9.06 -74.06 -0.67 2.59 16 44 H 0.18 4.24 7.79 -2.91 -0.02 4.22 16 Total: -1.00 -60.88 353.81 -0.24 -61.12 By element: Atomic # 1 Polarization: 21.50 SS G_CDS: -0.20 Total: 21.30 kcal Atomic # 6 Polarization: 15.46 SS G_CDS: 4.96 Total: 20.41 kcal Atomic # 7 Polarization: -109.78 SS G_CDS: -5.74 Total: -115.53 kcal Atomic # 8 Polarization: -31.56 SS G_CDS: -1.29 Total: -32.85 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -60.88 -0.24 -61.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968904801.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.090 kcal (2) G-P(sol) polarization free energy of solvation -60.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds