Wall clock time and date at job start Tue Mar 31 2020 12:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 120.00124 * 2 1 4 4 H 1.48502 * 109.46674 * 85.61835 * 3 2 1 5 5 H 1.48493 * 109.47191 * 325.62049 * 3 2 1 6 6 H 1.48496 * 109.47104 * 205.61506 * 3 2 1 7 7 C 1.38814 * 119.99976 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99898 * 195.60665 * 7 2 1 9 9 N 1.36932 * 120.00285 * 15.60323 * 7 2 1 10 10 C 1.47605 * 118.63972 * 28.13749 * 9 7 2 11 11 C 1.54295 * 111.94015 * 137.78370 * 10 9 7 12 12 C 1.50881 * 110.23547 * 319.69689 * 11 10 9 13 13 C 1.52562 * 109.35788 * 91.80065 * 12 11 10 14 14 C 1.47092 * 114.32995 * 274.98951 * 13 12 11 15 15 C 1.44581 * 118.64511 * 208.41079 * 9 7 2 16 16 H 1.09003 * 109.45102 * 150.66188 * 15 9 7 17 17 C 1.52995 * 109.45063 * 30.71622 * 15 9 7 18 18 N 1.46495 * 109.47585 * 55.00093 * 17 15 9 19 19 C 1.34774 * 120.00452 * 179.97438 * 18 17 15 20 20 O 1.21585 * 119.99773 * 0.02562 * 19 18 17 21 21 C 1.47533 * 119.99976 * 179.97438 * 19 18 17 22 22 C 1.39802 * 120.98403 * 359.97438 * 21 19 18 23 23 N 1.32190 * 118.98131 * 179.97438 * 22 21 19 24 24 C 1.31932 * 121.14065 * 0.02562 * 23 22 21 25 25 N 1.31732 * 122.19740 * 359.97438 * 24 23 22 26 26 C 1.32771 * 120.87174 * 359.73271 * 25 24 23 27 27 O 1.35280 * 120.61717 * 180.25995 * 26 25 24 28 28 H 0.96999 * 119.99598 * 359.97438 * 1 2 3 29 29 H 1.09006 * 108.94748 * 258.57539 * 10 9 7 30 30 H 1.08997 * 108.94902 * 17.20339 * 10 9 7 31 31 H 1.09001 * 109.36488 * 199.41978 * 11 10 9 32 32 H 1.09000 * 109.22991 * 79.88825 * 11 10 9 33 33 H 1.08996 * 109.48761 * 331.83749 * 12 11 10 34 34 H 1.09003 * 109.48957 * 211.76635 * 12 11 10 35 35 H 1.09006 * 108.51380 * 153.73353 * 13 12 11 36 36 H 1.08999 * 108.39434 * 36.15358 * 13 12 11 37 37 H 1.08999 * 109.32553 * 302.54540 * 14 13 12 38 38 H 1.08994 * 109.19306 * 182.97241 * 14 13 12 39 39 H 1.09001 * 109.47231 * 175.00291 * 17 15 9 40 40 H 1.09008 * 109.46967 * 294.99885 * 17 15 9 41 41 H 0.97010 * 119.99745 * 0.02562 * 18 17 15 42 42 H 1.08005 * 120.50944 * 359.95779 * 22 21 19 43 43 H 1.08002 * 118.90265 * 180.02562 * 24 23 22 44 44 H 0.96695 * 114.00093 * 270.26744 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4051 2.0998 1.3960 5 1 1.4971 2.6242 -0.7905 6 1 3.5910 1.4152 -0.6053 7 6 2.0102 -1.2022 -0.0005 8 1 3.0604 -1.2195 0.2511 9 7 1.3635 -2.3661 -0.3200 10 6 0.2005 -2.3033 -1.2268 11 6 0.2150 -3.4465 -2.2630 12 6 1.6186 -3.6768 -2.7663 13 6 2.2957 -4.7403 -1.9072 14 6 2.9187 -4.2215 -0.6798 15 6 1.8442 -3.6050 0.2495 16 1 1.0131 -4.3021 0.3560 17 6 2.4573 -3.3297 1.6240 18 7 1.4772 -2.6406 2.4669 19 6 1.7984 -2.2955 3.7295 20 8 2.9018 -2.5557 4.1688 21 6 0.8114 -1.6010 4.5781 22 6 -0.4626 -1.2904 4.0935 23 7 -1.3160 -0.6679 4.8882 24 6 -0.9838 -0.3384 6.1217 25 7 0.2033 -0.6087 6.6249 26 6 1.1228 -1.2367 5.9019 27 8 2.3384 -1.5163 6.4255 28 1 -0.4849 0.8401 0.0004 29 1 -0.7131 -2.3683 -0.6358 30 1 0.2128 -1.3485 -1.7525 31 1 -0.4307 -3.1831 -3.1007 32 1 -0.1559 -4.3589 -1.7961 33 1 2.1837 -2.7468 -2.7061 34 1 1.5827 -4.0147 -3.8020 35 1 3.0643 -5.2304 -2.5049 36 1 1.5492 -5.4840 -1.6285 37 1 3.6504 -3.4573 -0.9419 38 1 3.4200 -5.0377 -0.1598 39 1 2.7393 -4.2731 2.0916 40 1 3.3417 -2.7030 1.5084 41 1 0.5967 -2.4334 2.1165 42 1 -0.7451 -1.5548 3.0851 43 1 -1.7095 0.1691 6.7399 44 1 2.9942 -0.8183 6.2920 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968906844.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:45 Heat of formation + Delta-G solvation = -4.919700 kcal Electronic energy + Delta-G solvation = -28407.639891 eV Core-core repulsion = 24554.229104 eV Total energy + Delta-G solvation = -3853.410787 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.16911 -39.05583 -38.03667 -37.42778 -34.55375 -33.59644 -33.30768 -32.10445 -31.17793 -30.71850 -27.18307 -25.87516 -24.89241 -23.99869 -23.52344 -22.20038 -20.38157 -19.72763 -19.28152 -19.11664 -17.83776 -17.51973 -16.39835 -16.05599 -15.61860 -15.20672 -14.89502 -14.66098 -14.33449 -14.09937 -13.94744 -13.71457 -13.61219 -13.48566 -13.02997 -12.82282 -12.16330 -12.09611 -11.99099 -11.56152 -11.31301 -11.17366 -11.15645 -10.91638 -10.66595 -10.58619 -10.27333 -10.08842 -10.03922 -9.77257 -9.65740 -9.62489 -9.51890 -9.35866 -9.28976 -8.50792 -8.32485 -6.78600 -5.91616 -3.35845 0.51222 0.98046 3.17650 3.27681 3.32900 3.37210 3.39833 3.69651 3.91151 4.11277 4.39323 4.42370 4.92883 5.02596 5.13177 5.26553 5.34652 5.39522 5.42782 5.59197 5.63157 5.82999 5.95378 6.01501 6.08825 6.19255 6.24494 6.33681 6.50569 6.55341 6.60509 6.63716 6.70135 6.79139 6.84495 6.92898 7.03175 7.11273 7.33605 7.45257 7.58780 7.74277 7.97977 8.12542 8.34075 8.71286 9.11708 9.76063 10.21554 11.14814 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013145 B = 0.004927 C = 0.004355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.513992 B = 5681.669221 C = 6427.354217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.013 3.987 3 Si 0.890 3.110 4 H -0.291 1.291 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.250 4.250 8 H 0.063 0.937 9 N -0.584 5.584 10 C 0.180 3.820 11 C -0.143 4.143 12 C -0.106 4.106 13 C -0.101 4.101 14 C -0.135 4.135 15 C 0.172 3.828 16 H 0.046 0.954 17 C 0.130 3.870 18 N -0.682 5.682 19 C 0.562 3.438 20 O -0.542 6.542 21 C -0.248 4.248 22 C 0.208 3.792 23 N -0.527 5.527 24 C 0.329 3.671 25 N -0.550 5.550 26 C 0.409 3.591 27 O -0.456 6.456 28 H 0.254 0.746 29 H 0.025 0.975 30 H 0.073 0.927 31 H 0.049 0.951 32 H 0.043 0.957 33 H 0.074 0.926 34 H 0.039 0.961 35 H 0.041 0.959 36 H 0.046 0.954 37 H 0.064 0.936 38 H 0.049 0.951 39 H 0.053 0.947 40 H 0.071 0.929 41 H 0.409 0.591 42 H 0.183 0.817 43 H 0.202 0.798 44 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.121 -4.714 3.464 5.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.186 4.186 3 Si 0.720 3.280 4 H -0.218 1.218 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.380 4.380 8 H 0.080 0.920 9 N -0.306 5.306 10 C 0.055 3.945 11 C -0.182 4.182 12 C -0.144 4.144 13 C -0.139 4.139 14 C -0.176 4.176 15 C 0.063 3.937 16 H 0.064 0.936 17 C 0.006 3.994 18 N -0.331 5.331 19 C 0.346 3.654 20 O -0.421 6.421 21 C -0.257 4.257 22 C 0.042 3.958 23 N -0.242 5.242 24 C 0.042 3.958 25 N -0.275 5.275 26 C 0.221 3.779 27 O -0.264 6.264 28 H 0.064 0.936 29 H 0.043 0.957 30 H 0.091 0.909 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.092 0.908 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.089 0.911 41 H 0.247 0.753 42 H 0.199 0.801 43 H 0.219 0.781 44 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -1.300 -4.853 4.466 6.722 hybrid contribution 0.888 1.178 -0.894 1.725 sum -0.412 -3.676 3.572 5.142 Atomic orbital electron populations 1.69999 1.04890 1.25520 1.54092 1.24901 0.95151 0.97862 1.00661 0.86485 0.79532 0.84484 0.77497 1.21838 1.21617 1.20518 1.19025 0.92332 0.84686 1.41965 0.91974 1.43738 1.34444 1.01609 1.50813 1.21079 0.88445 0.95584 0.89351 1.22117 0.96071 1.00455 0.99565 1.20939 0.97069 0.99794 0.96597 1.20292 0.99028 0.97933 0.96624 1.21361 0.99622 0.99756 0.96870 1.20530 0.94156 0.89484 0.89504 0.93644 1.21537 0.92391 0.95258 0.90224 1.45584 1.18625 1.57680 1.11216 1.17470 0.86451 0.79456 0.82030 1.90755 1.22000 1.55622 1.73728 1.22176 0.99018 1.08403 0.96102 1.23707 0.86771 0.86084 0.99200 1.68437 1.36051 1.13837 1.05898 1.24987 0.90323 0.90974 0.89554 1.68081 1.04094 1.15919 1.39441 1.19458 0.87120 0.86025 0.85328 1.84609 1.17078 1.45539 1.79184 0.93612 0.95656 0.90858 0.93272 0.93805 0.90776 0.94206 0.94068 0.93515 0.91769 0.93270 0.92863 0.91101 0.75346 0.80054 0.78132 0.72771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.24 11.13 55.49 0.62 -21.62 16 2 C 0.01 0.32 4.86 -17.43 -0.08 0.23 16 3 Si 0.89 20.45 29.58 -169.99 -5.03 15.42 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.25 -5.77 7.62 -15.06 -0.11 -5.89 16 8 H 0.06 1.51 6.75 -52.48 -0.35 1.16 16 9 N -0.58 -11.78 1.77 -164.25 -0.29 -12.07 16 10 C 0.18 3.65 4.70 -2.76 -0.01 3.63 16 11 C -0.14 -2.39 5.71 -27.12 -0.15 -2.55 16 12 C -0.11 -1.71 5.51 -28.02 -0.15 -1.86 16 13 C -0.10 -1.50 5.16 -29.79 -0.15 -1.65 16 14 C -0.14 -2.13 5.06 -28.58 -0.14 -2.28 16 15 C 0.17 3.00 2.19 -67.97 -0.15 2.85 16 16 H 0.05 0.78 8.06 -51.93 -0.42 0.36 16 17 C 0.13 2.32 4.52 -4.05 -0.02 2.30 16 18 N -0.68 -12.37 4.67 -61.35 -0.29 -12.65 16 19 C 0.56 10.51 7.78 -12.47 -0.10 10.42 16 20 O -0.54 -11.25 15.32 -15.85 -0.24 -11.50 16 21 C -0.25 -4.20 5.92 -104.56 -0.62 -4.81 16 22 C 0.21 3.33 10.80 -16.81 -0.18 3.15 16 23 N -0.53 -7.98 10.42 -14.29 -0.15 -8.13 16 24 C 0.33 4.38 12.27 -92.09 -1.13 3.25 16 25 N -0.55 -8.25 10.45 -14.32 -0.15 -8.40 16 26 C 0.41 6.64 7.85 -16.18 -0.13 6.51 16 27 O -0.46 -7.03 11.81 -38.68 -0.46 -7.49 16 28 H 0.25 6.34 8.31 -40.82 -0.34 6.00 16 29 H 0.03 0.55 8.02 -51.93 -0.42 0.13 16 30 H 0.07 1.71 6.46 -51.93 -0.34 1.37 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.04 0.70 7.31 -51.93 -0.38 0.32 16 33 H 0.07 1.38 7.49 -51.93 -0.39 0.99 16 34 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.05 0.66 7.35 -51.93 -0.38 0.28 16 37 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.05 0.69 8.11 -51.93 -0.42 0.27 16 39 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.07 1.40 6.84 -51.92 -0.36 1.05 16 41 H 0.41 7.52 6.21 -40.82 -0.25 7.27 16 42 H 0.18 2.87 6.53 -52.48 -0.34 2.52 16 43 H 0.20 1.81 8.06 -52.49 -0.42 1.38 16 44 H 0.41 4.68 9.06 45.56 0.41 5.10 16 LS Contribution 351.67 15.07 5.30 5.30 Total: -1.00 -27.69 351.67 -9.13 -36.82 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: -5.31 Total: 11.02 kcal Atomic # 6 Polarization: 16.45 SS G_CDS: -3.14 Total: 13.31 kcal Atomic # 7 Polarization: -62.62 SS G_CDS: -0.26 Total: -62.88 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -0.70 Total: -18.99 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.03 Total: 15.42 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -27.69 -9.13 -36.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968906844.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.903 kcal (2) G-P(sol) polarization free energy of solvation -27.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds