Wall clock time and date at job start Tue Mar 31 2020 12:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 120.00124 * 2 1 4 4 H 1.48502 * 109.46674 * 85.61835 * 3 2 1 5 5 H 1.48493 * 109.47191 * 325.62049 * 3 2 1 6 6 H 1.48496 * 109.47104 * 205.61506 * 3 2 1 7 7 C 1.38814 * 119.99976 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99898 * 195.60665 * 7 2 1 9 9 N 1.36932 * 120.00285 * 15.60323 * 7 2 1 10 10 C 1.47605 * 118.63972 * 28.13749 * 9 7 2 11 11 C 1.54295 * 111.94015 * 137.78370 * 10 9 7 12 12 C 1.50881 * 110.23547 * 319.69689 * 11 10 9 13 13 C 1.52562 * 109.35788 * 91.80065 * 12 11 10 14 14 C 1.47092 * 114.32995 * 274.98951 * 13 12 11 15 15 C 1.44581 * 118.64511 * 208.41079 * 9 7 2 16 16 H 1.09003 * 109.45102 * 150.66188 * 15 9 7 17 17 C 1.52995 * 109.45063 * 30.71622 * 15 9 7 18 18 N 1.46495 * 109.47585 * 55.00093 * 17 15 9 19 19 C 1.34774 * 120.00452 * 179.97438 * 18 17 15 20 20 O 1.21585 * 119.99773 * 0.02562 * 19 18 17 21 21 C 1.47533 * 119.99976 * 179.97438 * 19 18 17 22 22 C 1.39802 * 120.98403 * 359.97438 * 21 19 18 23 23 N 1.32190 * 118.98131 * 179.97438 * 22 21 19 24 24 C 1.31932 * 121.14065 * 0.02562 * 23 22 21 25 25 N 1.31732 * 122.19740 * 359.97438 * 24 23 22 26 26 C 1.32771 * 120.87174 * 359.73271 * 25 24 23 27 27 O 1.35280 * 120.61717 * 180.25995 * 26 25 24 28 28 H 0.96999 * 119.99598 * 359.97438 * 1 2 3 29 29 H 1.09006 * 108.94748 * 258.57539 * 10 9 7 30 30 H 1.08997 * 108.94902 * 17.20339 * 10 9 7 31 31 H 1.09001 * 109.36488 * 199.41978 * 11 10 9 32 32 H 1.09000 * 109.22991 * 79.88825 * 11 10 9 33 33 H 1.08996 * 109.48761 * 331.83749 * 12 11 10 34 34 H 1.09003 * 109.48957 * 211.76635 * 12 11 10 35 35 H 1.09006 * 108.51380 * 153.73353 * 13 12 11 36 36 H 1.08999 * 108.39434 * 36.15358 * 13 12 11 37 37 H 1.08999 * 109.32553 * 302.54540 * 14 13 12 38 38 H 1.08994 * 109.19306 * 182.97241 * 14 13 12 39 39 H 1.09001 * 109.47231 * 175.00291 * 17 15 9 40 40 H 1.09008 * 109.46967 * 294.99885 * 17 15 9 41 41 H 0.97010 * 119.99745 * 0.02562 * 18 17 15 42 42 H 1.08005 * 120.50944 * 359.95779 * 22 21 19 43 43 H 1.08002 * 118.90265 * 180.02562 * 24 23 22 44 44 H 0.96695 * 114.00093 * 270.26744 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4051 2.0998 1.3960 5 1 1.4971 2.6242 -0.7905 6 1 3.5910 1.4152 -0.6053 7 6 2.0102 -1.2022 -0.0005 8 1 3.0604 -1.2195 0.2511 9 7 1.3635 -2.3661 -0.3200 10 6 0.2005 -2.3033 -1.2268 11 6 0.2150 -3.4465 -2.2630 12 6 1.6186 -3.6768 -2.7663 13 6 2.2957 -4.7403 -1.9072 14 6 2.9187 -4.2215 -0.6798 15 6 1.8442 -3.6050 0.2495 16 1 1.0131 -4.3021 0.3560 17 6 2.4573 -3.3297 1.6240 18 7 1.4772 -2.6406 2.4669 19 6 1.7984 -2.2955 3.7295 20 8 2.9018 -2.5557 4.1688 21 6 0.8114 -1.6010 4.5781 22 6 -0.4626 -1.2904 4.0935 23 7 -1.3160 -0.6679 4.8882 24 6 -0.9838 -0.3384 6.1217 25 7 0.2033 -0.6087 6.6249 26 6 1.1228 -1.2367 5.9019 27 8 2.3384 -1.5163 6.4255 28 1 -0.4849 0.8401 0.0004 29 1 -0.7131 -2.3683 -0.6358 30 1 0.2128 -1.3485 -1.7525 31 1 -0.4307 -3.1831 -3.1007 32 1 -0.1559 -4.3589 -1.7961 33 1 2.1837 -2.7468 -2.7061 34 1 1.5827 -4.0147 -3.8020 35 1 3.0643 -5.2304 -2.5049 36 1 1.5492 -5.4840 -1.6285 37 1 3.6504 -3.4573 -0.9419 38 1 3.4200 -5.0377 -0.1598 39 1 2.7393 -4.2731 2.0916 40 1 3.3417 -2.7030 1.5084 41 1 0.5967 -2.4334 2.1165 42 1 -0.7451 -1.5548 3.0851 43 1 -1.7095 0.1691 6.7399 44 1 2.9942 -0.8183 6.2920 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968906844.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:44 Heat of formation + Delta-G solvation = -22.838926 kcal Electronic energy + Delta-G solvation = -28408.416927 eV Core-core repulsion = 24554.229104 eV Total energy + Delta-G solvation = -3854.187823 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.39414 -40.50454 -39.47104 -38.65189 -35.99395 -35.21727 -34.55586 -33.46517 -32.53492 -32.34160 -28.68737 -27.39617 -26.16231 -25.26732 -25.12707 -23.59612 -21.82122 -21.10037 -20.77672 -20.32781 -19.07300 -18.96652 -17.77687 -17.53389 -17.17690 -16.61348 -16.33420 -16.02900 -15.91314 -15.58425 -15.22905 -15.17939 -14.91985 -14.81209 -14.50203 -14.24554 -13.68489 -13.37923 -13.29999 -13.13857 -12.90083 -12.82214 -12.69988 -12.42297 -12.35919 -11.99946 -11.77937 -11.52140 -11.36731 -11.29393 -11.17041 -11.05412 -10.79154 -10.78119 -10.49622 -10.33308 -9.81959 -8.52249 -7.77861 -5.20112 -0.70163 -0.24477 1.38602 1.46952 1.50414 1.82641 2.10789 2.34197 2.53487 2.65290 3.02265 3.21654 3.37270 3.62155 3.66263 3.76220 4.06863 4.10799 4.20493 4.30664 4.43188 4.46034 4.53515 4.64648 4.70208 4.84725 5.04288 5.07431 5.10781 5.16748 5.27548 5.30134 5.41741 5.45609 5.57356 5.62012 5.64354 5.71400 5.78950 5.82813 5.93938 6.38404 6.49633 6.62683 6.83442 7.23949 7.29269 8.03027 8.41835 9.24890 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013145 B = 0.004927 C = 0.004355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.513992 B = 5681.669221 C = 6427.354217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.021 4.021 3 Si 0.923 3.077 4 H -0.301 1.301 5 H -0.297 1.297 6 H -0.283 1.283 7 C -0.231 4.231 8 H 0.048 0.952 9 N -0.587 5.587 10 C 0.189 3.811 11 C -0.133 4.133 12 C -0.103 4.103 13 C -0.101 4.101 14 C -0.127 4.127 15 C 0.172 3.828 16 H 0.059 0.941 17 C 0.133 3.867 18 N -0.681 5.681 19 C 0.561 3.439 20 O -0.568 6.568 21 C -0.268 4.268 22 C 0.213 3.787 23 N -0.537 5.537 24 C 0.338 3.662 25 N -0.555 5.555 26 C 0.409 3.591 27 O -0.466 6.466 28 H 0.246 0.754 29 H 0.007 0.993 30 H 0.038 0.962 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.042 0.958 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.042 0.958 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.047 0.953 41 H 0.408 0.592 42 H 0.179 0.821 43 H 0.247 0.753 44 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.559 -6.121 3.590 7.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.218 4.218 3 Si 0.755 3.245 4 H -0.229 1.229 5 H -0.223 1.223 6 H -0.208 1.208 7 C -0.362 4.362 8 H 0.066 0.934 9 N -0.309 5.309 10 C 0.064 3.936 11 C -0.172 4.172 12 C -0.141 4.141 13 C -0.138 4.138 14 C -0.168 4.168 15 C 0.064 3.936 16 H 0.077 0.923 17 C 0.009 3.991 18 N -0.330 5.330 19 C 0.346 3.654 20 O -0.449 6.449 21 C -0.277 4.277 22 C 0.046 3.954 23 N -0.253 5.253 24 C 0.053 3.947 25 N -0.280 5.280 26 C 0.220 3.780 27 O -0.276 6.276 28 H 0.055 0.945 29 H 0.026 0.974 30 H 0.056 0.944 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.061 0.939 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.061 0.939 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.065 0.935 41 H 0.245 0.755 42 H 0.195 0.805 43 H 0.263 0.737 44 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges -1.723 -6.270 4.580 7.954 hybrid contribution 1.035 1.610 -0.892 2.112 sum -0.688 -4.660 3.689 5.983 Atomic orbital electron populations 1.70072 1.05116 1.24905 1.55711 1.25171 0.95542 0.98988 1.02089 0.85963 0.78718 0.83296 0.76514 1.22925 1.22324 1.20816 1.18948 0.91663 0.85698 1.39909 0.93380 1.43768 1.34147 1.01805 1.51210 1.20866 0.87612 0.95551 0.89584 1.21994 0.97056 0.99363 0.98754 1.20899 0.96047 0.98913 0.98241 1.20277 0.99846 0.97674 0.96011 1.21275 0.98538 0.99770 0.97214 1.20697 0.95051 0.88388 0.89447 0.92312 1.21532 0.91508 0.95402 0.90660 1.45616 1.18529 1.57597 1.11214 1.17728 0.86445 0.79065 0.82137 1.90728 1.23087 1.56845 1.74233 1.22036 0.99128 1.09990 0.96522 1.23656 0.86603 0.85858 0.99251 1.68515 1.35886 1.14186 1.06666 1.25919 0.90336 0.89314 0.89172 1.68219 1.04474 1.16096 1.39207 1.19584 0.87587 0.85632 0.85153 1.84556 1.17375 1.46630 1.79034 0.94461 0.97444 0.94382 0.92282 0.92187 0.93888 0.92080 0.92133 0.92030 0.93883 0.90884 0.91232 0.93451 0.75486 0.80451 0.73715 0.71042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.02 11.13 21.65 0.24 -45.78 16 2 C -0.02 -1.04 4.86 84.86 0.41 -0.63 16 3 Si 0.92 42.80 29.58 68.60 2.03 44.83 16 4 H -0.30 -14.35 7.11 99.48 0.71 -13.65 16 5 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 6 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 7 C -0.23 -10.83 7.62 84.03 0.64 -10.19 16 8 H 0.05 2.40 6.75 -2.91 -0.02 2.38 16 9 N -0.59 -23.63 1.77 -673.56 -1.19 -24.82 16 10 C 0.19 7.63 4.70 86.61 0.41 8.03 16 11 C -0.13 -4.18 5.71 30.34 0.17 -4.01 16 12 C -0.10 -3.08 5.51 29.76 0.16 -2.92 16 13 C -0.10 -2.65 5.16 28.61 0.15 -2.50 16 14 C -0.13 -3.75 5.06 29.39 0.15 -3.60 16 15 C 0.17 5.77 2.19 45.99 0.10 5.87 16 16 H 0.06 1.87 8.06 -2.39 -0.02 1.85 16 17 C 0.13 4.69 4.52 86.38 0.39 5.08 16 18 N -0.68 -24.79 4.67 -466.29 -2.18 -26.96 16 19 C 0.56 21.13 7.78 86.70 0.67 21.80 16 20 O -0.57 -23.73 15.32 16.24 0.25 -23.48 16 21 C -0.27 -9.03 5.92 -19.83 -0.12 -9.14 16 22 C 0.21 6.74 10.80 85.02 0.92 7.66 16 23 N -0.54 -15.55 10.42 -199.12 -2.07 -17.63 16 24 C 0.34 8.25 12.27 180.86 2.22 10.47 16 25 N -0.55 -15.72 10.45 -312.03 -3.26 -18.98 16 26 C 0.41 12.99 7.85 85.17 0.67 13.66 16 27 O -0.47 -14.13 11.81 -65.44 -0.77 -14.91 16 28 H 0.25 12.56 8.31 -92.71 -0.77 11.79 16 29 H 0.01 0.33 8.02 -2.38 -0.02 0.31 16 30 H 0.04 1.80 6.46 -2.39 -0.02 1.79 16 31 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.06 1.72 7.31 -2.39 -0.02 1.70 16 33 H 0.04 1.56 7.49 -2.39 -0.02 1.54 16 34 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 36 H 0.06 1.48 7.35 -2.39 -0.02 1.46 16 37 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.07 1.82 8.11 -2.39 -0.02 1.80 16 39 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.05 1.89 6.84 -2.38 -0.02 1.88 16 41 H 0.41 15.11 6.21 -92.70 -0.58 14.54 16 42 H 0.18 5.68 6.53 -2.91 -0.02 5.66 16 43 H 0.25 3.50 8.06 -2.91 -0.02 3.47 16 44 H 0.43 9.58 9.06 -74.06 -0.67 8.91 16 Total: -1.00 -59.84 351.67 -0.21 -60.05 By element: Atomic # 1 Polarization: 28.29 SS G_CDS: -0.20 Total: 28.10 kcal Atomic # 6 Polarization: 32.64 SS G_CDS: 6.95 Total: 39.59 kcal Atomic # 7 Polarization: -125.71 SS G_CDS: -8.46 Total: -134.17 kcal Atomic # 8 Polarization: -37.86 SS G_CDS: -0.52 Total: -38.39 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -59.84 -0.21 -60.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968906844.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.207 kcal (2) G-P(sol) polarization free energy of solvation -59.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds