Wall clock time and date at job start Tue Mar 31 2020 12:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 120.00344 * 2 1 4 4 H 1.48505 * 109.46851 * 270.00128 * 3 2 1 5 5 H 1.48498 * 109.46956 * 30.00232 * 3 2 1 6 6 H 1.48501 * 109.46885 * 150.00232 * 3 2 1 7 7 C 1.38817 * 119.99630 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00072 * 164.49490 * 7 2 1 9 9 N 1.36935 * 120.00108 * 344.49509 * 7 2 1 10 10 C 1.47609 * 118.63930 * 331.69031 * 9 7 2 11 11 C 1.53949 * 112.14604 * 222.11235 * 10 9 7 12 12 C 1.50885 * 110.08891 * 40.56502 * 11 10 9 13 13 C 1.52563 * 109.34867 * 268.10999 * 12 11 10 14 14 C 1.47099 * 114.32996 * 85.03085 * 13 12 11 15 15 C 1.44573 * 118.64153 * 151.67122 * 9 7 2 16 16 H 1.09002 * 109.44985 * 209.34553 * 15 9 7 17 17 C 1.52995 * 109.45055 * 329.26367 * 15 9 7 18 18 N 1.46500 * 109.47469 * 305.00011 * 17 15 9 19 19 C 1.34771 * 120.00244 * 179.97438 * 18 17 15 20 20 O 1.21588 * 120.00134 * 0.02562 * 19 18 17 21 21 C 1.47573 * 120.00087 * 180.02562 * 19 18 17 22 22 C 1.38054 * 119.72897 * 180.02562 * 21 19 18 23 23 N 1.34879 * 119.94742 * 179.97438 * 22 21 19 24 24 H 0.97004 * 120.30416 * 180.02562 * 23 22 21 25 25 C 1.34955 * 119.38195 * 0.02562 * 23 22 21 26 26 O 1.21867 * 120.26441 * 180.02562 * 25 23 22 27 27 C 1.41783 * 119.46340 * 359.97438 * 25 23 22 28 28 N 1.30602 * 120.03161 * 359.73641 * 27 25 23 29 29 H 0.96998 * 119.99575 * 359.97438 * 1 2 3 30 30 H 1.09004 * 108.95065 * 342.80177 * 10 9 7 31 31 H 1.09007 * 108.94841 * 101.51800 * 10 9 7 32 32 H 1.09000 * 109.36734 * 160.75115 * 11 10 9 33 33 H 1.08994 * 109.36747 * 280.50452 * 11 10 9 34 34 H 1.08997 * 109.49117 * 28.07444 * 12 11 10 35 35 H 1.08994 * 109.48903 * 148.12701 * 12 11 10 36 36 H 1.09003 * 108.51338 * 206.28473 * 13 12 11 37 37 H 1.09003 * 108.51210 * 323.93147 * 13 12 11 38 38 H 1.08993 * 109.32934 * 176.93111 * 14 13 12 39 39 H 1.09002 * 109.32922 * 57.44835 * 14 13 12 40 40 H 1.08999 * 109.46877 * 65.00318 * 17 15 9 41 41 H 1.09009 * 109.47005 * 185.00089 * 17 15 9 42 42 H 0.97003 * 119.99163 * 0.02562 * 18 17 15 43 43 H 1.07994 * 120.02112 * 359.97438 * 22 21 19 44 44 H 1.07993 * 119.98345 * 180.02562 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0607 -1.2192 -0.2506 9 7 1.3629 -2.3667 0.3160 10 6 0.2009 -2.3058 1.2242 11 6 0.2095 -3.4493 2.2550 12 6 1.6119 -3.6798 2.7616 13 6 2.2913 -4.7423 1.9031 14 6 2.9176 -4.2222 0.6780 15 6 1.8455 -3.6047 -0.2536 16 1 1.0148 -4.3020 -0.3632 17 6 2.4618 -3.3279 -1.6263 18 7 1.4834 -2.6383 -2.4709 19 6 1.8078 -2.2909 -3.7320 20 8 2.9124 -2.5501 -4.1690 21 6 0.8224 -1.5958 -4.5826 22 6 1.1605 -1.2429 -5.8738 23 7 0.2631 -0.6079 -6.6552 24 1 0.4950 -0.3580 -7.5633 25 6 -0.9605 -0.3237 -6.1619 26 8 -1.7839 0.2492 -6.8540 27 6 -1.2805 -0.6978 -4.8322 28 7 -0.3966 -1.3169 -4.0967 29 1 -0.4849 0.8401 0.0004 30 1 0.2144 -1.3526 1.7529 31 1 -0.7134 -2.3699 0.6341 32 1 -0.4384 -3.1869 3.0913 33 1 -0.1578 -4.3618 1.7855 34 1 2.1770 -2.7495 2.7038 35 1 1.5734 -4.0182 3.7970 36 1 3.0582 -5.2330 2.5024 37 1 1.5467 -5.4862 1.6196 38 1 3.4224 -5.0358 0.1575 39 1 3.6485 -3.4582 0.9428 40 1 3.3456 -2.7009 -1.5080 41 1 2.7452 -4.2707 -2.0942 42 1 0.6022 -2.4311 -2.1221 43 1 2.1428 -1.4752 -6.2577 44 1 -2.2573 -0.4748 -4.4291 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969005118.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:31 Heat of formation + Delta-G solvation = -8.170068 kcal Electronic energy + Delta-G solvation = -28148.213839 eV Core-core repulsion = 24294.662105 eV Total energy + Delta-G solvation = -3853.551734 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.69789 -39.19384 -38.09975 -37.24693 -35.25152 -34.44578 -33.42576 -31.72626 -30.68417 -30.31904 -27.06888 -25.74089 -25.35568 -24.24935 -23.42678 -22.26432 -20.77141 -19.81703 -19.16723 -18.72642 -18.34197 -17.09055 -16.29497 -16.03001 -15.66979 -15.48510 -15.18841 -14.65332 -14.58815 -14.39692 -14.04577 -13.84901 -13.53092 -13.26852 -12.90092 -12.77492 -12.38998 -12.03390 -11.92867 -11.77411 -11.48665 -11.43229 -11.21339 -11.06788 -10.82189 -10.58185 -10.19288 -10.01744 -9.97051 -9.82449 -9.65657 -9.53498 -9.49879 -9.25084 -8.43570 -8.37481 -8.07476 -6.64345 -5.77495 -3.21522 0.48987 1.31728 2.45329 3.11055 3.36043 3.44301 3.46545 3.69771 3.96366 4.23899 4.26641 4.49923 4.80307 5.04745 5.23011 5.34392 5.39408 5.47074 5.51987 5.66964 5.89702 5.97135 6.04774 6.09891 6.10829 6.17178 6.29386 6.32818 6.40114 6.58516 6.63645 6.67173 6.72907 6.77270 6.87132 7.01324 7.11994 7.22392 7.44573 7.49473 7.69317 7.70814 7.85948 8.33472 8.46905 8.85911 9.24462 9.89252 10.34977 11.29008 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013416 B = 0.004591 C = 0.004103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.540665 B = 6096.974823 C = 6822.007031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.017 3.983 3 Si 0.888 3.112 4 H -0.291 1.291 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.254 4.254 8 H 0.061 0.939 9 N -0.582 5.582 10 C 0.181 3.819 11 C -0.143 4.143 12 C -0.106 4.106 13 C -0.101 4.101 14 C -0.136 4.136 15 C 0.173 3.827 16 H 0.045 0.955 17 C 0.128 3.872 18 N -0.664 5.664 19 C 0.580 3.420 20 O -0.570 6.570 21 C -0.057 4.057 22 C 0.157 3.843 23 N -0.588 5.588 24 H 0.421 0.579 25 C 0.477 3.523 26 O -0.533 6.533 27 C 0.040 3.960 28 N -0.352 5.352 29 H 0.252 0.748 30 H 0.072 0.928 31 H 0.026 0.974 32 H 0.048 0.952 33 H 0.043 0.957 34 H 0.074 0.926 35 H 0.038 0.962 36 H 0.040 0.960 37 H 0.046 0.954 38 H 0.048 0.952 39 H 0.063 0.937 40 H 0.070 0.930 41 H 0.052 0.948 42 H 0.423 0.577 43 H 0.188 0.812 44 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.769 -6.453 -6.030 8.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.183 4.183 3 Si 0.718 3.282 4 H -0.218 1.218 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.384 4.384 8 H 0.079 0.921 9 N -0.304 5.304 10 C 0.056 3.944 11 C -0.182 4.182 12 C -0.144 4.144 13 C -0.138 4.138 14 C -0.177 4.177 15 C 0.064 3.936 16 H 0.063 0.937 17 C 0.003 3.997 18 N -0.312 5.312 19 C 0.364 3.636 20 O -0.452 6.452 21 C -0.181 4.181 22 C 0.021 3.979 23 N -0.221 5.221 24 H 0.261 0.739 25 C 0.273 3.727 26 O -0.409 6.409 27 C -0.151 4.151 28 N -0.066 5.066 29 H 0.062 0.938 30 H 0.090 0.910 31 H 0.044 0.956 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.092 0.908 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.070 0.930 42 H 0.262 0.738 43 H 0.205 0.795 44 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 0.792 -6.491 -5.755 8.711 hybrid contribution 0.442 1.554 -0.943 1.871 sum 1.234 -4.937 -6.697 8.411 Atomic orbital electron populations 1.70025 1.04819 1.25233 1.53445 1.24899 0.95085 0.97746 1.00565 0.86536 0.79414 0.84686 0.77518 1.21814 1.21742 1.20669 1.18937 0.92134 0.84637 1.42654 0.92139 1.43674 1.34406 1.01587 1.50706 1.20988 0.88646 0.95370 0.89347 1.22075 0.96019 1.00539 0.99584 1.20945 0.97146 0.99796 0.96523 1.20287 0.98980 0.97925 0.96625 1.21377 0.99667 0.99722 0.96926 1.20501 0.94039 0.89582 0.89468 0.93735 1.21558 0.92556 0.95182 0.90397 1.45508 1.19010 1.55834 1.10862 1.17123 0.85302 0.78882 0.82312 1.90733 1.21940 1.58015 1.74534 1.20679 0.94307 1.10147 0.92967 1.23171 0.95284 0.88086 0.91328 1.43621 1.13745 1.47586 1.17121 0.73926 1.18869 0.81300 0.81626 0.90915 1.90970 1.46533 1.42438 1.61006 1.24761 1.01231 1.00127 0.88941 1.67838 0.99948 1.04104 1.34735 0.93791 0.90980 0.95629 0.93305 0.93810 0.90763 0.94281 0.94148 0.93538 0.93353 0.91826 0.91159 0.92989 0.73829 0.79534 0.79118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.26 11.14 55.49 0.62 -22.64 16 2 C 0.02 0.42 4.86 -17.43 -0.08 0.34 16 3 Si 0.89 21.13 29.58 -169.99 -5.03 16.10 16 4 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.25 -6.13 7.62 -15.06 -0.11 -6.25 16 8 H 0.06 1.53 6.74 -52.49 -0.35 1.17 16 9 N -0.58 -12.39 1.77 -164.46 -0.29 -12.68 16 10 C 0.18 3.87 4.66 -2.94 -0.01 3.85 16 11 C -0.14 -2.50 5.71 -27.30 -0.16 -2.66 16 12 C -0.11 -1.77 5.51 -28.02 -0.15 -1.93 16 13 C -0.10 -1.54 5.16 -29.79 -0.15 -1.69 16 14 C -0.14 -2.22 5.06 -28.58 -0.14 -2.36 16 15 C 0.17 3.17 2.19 -67.98 -0.15 3.02 16 16 H 0.04 0.81 8.06 -51.93 -0.42 0.39 16 17 C 0.13 2.36 4.52 -4.04 -0.02 2.34 16 18 N -0.66 -12.82 4.71 -61.34 -0.29 -13.11 16 19 C 0.58 10.76 7.79 -12.46 -0.10 10.66 16 20 O -0.57 -11.26 16.28 5.29 0.09 -11.17 16 21 C -0.06 -0.91 6.71 -83.11 -0.56 -1.47 16 22 C 0.16 1.83 10.78 -16.28 -0.18 1.66 16 23 N -0.59 -6.16 5.28 -14.19 -0.08 -6.24 16 24 H 0.42 2.98 8.92 -40.82 -0.36 2.61 16 25 C 0.48 6.56 7.74 -14.82 -0.11 6.44 16 26 O -0.53 -8.67 17.95 5.04 0.09 -8.58 16 27 C 0.04 0.57 11.23 -16.72 -0.19 0.39 16 28 N -0.35 -5.83 9.62 -9.34 -0.09 -5.92 16 29 H 0.25 6.61 8.31 -40.82 -0.34 6.27 16 30 H 0.07 1.75 6.47 -51.93 -0.34 1.42 16 31 H 0.03 0.59 8.02 -51.92 -0.42 0.18 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.04 0.73 7.31 -51.93 -0.38 0.35 16 34 H 0.07 1.42 7.48 -51.93 -0.39 1.04 16 35 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.05 0.68 7.35 -51.93 -0.38 0.30 16 38 H 0.05 0.69 8.11 -51.93 -0.42 0.27 16 39 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.07 1.43 6.84 -51.93 -0.36 1.07 16 41 H 0.05 0.87 8.14 -51.92 -0.42 0.45 16 42 H 0.42 8.80 7.39 -40.82 -0.30 8.50 16 43 H 0.19 1.70 7.58 -52.49 -0.40 1.30 16 44 H 0.19 2.40 8.06 -52.49 -0.42 1.97 16 LS Contribution 354.54 15.07 5.34 5.34 Total: -1.00 -29.58 354.54 -7.94 -37.52 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -6.19 Total: 9.04 kcal Atomic # 6 Polarization: 14.46 SS G_CDS: -2.12 Total: 12.34 kcal Atomic # 7 Polarization: -60.46 SS G_CDS: -0.13 Total: -60.59 kcal Atomic # 8 Polarization: -19.93 SS G_CDS: 0.18 Total: -19.75 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.10 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.58 -7.94 -37.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969005118.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.351 kcal (2) G-P(sol) polarization free energy of solvation -29.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds