Wall clock time and date at job start Tue Mar 31 2020 12:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 120.00344 * 2 1 4 4 H 1.48505 * 109.46851 * 270.00128 * 3 2 1 5 5 H 1.48498 * 109.46956 * 30.00232 * 3 2 1 6 6 H 1.48501 * 109.46885 * 150.00232 * 3 2 1 7 7 C 1.38817 * 119.99630 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00072 * 164.49490 * 7 2 1 9 9 N 1.36935 * 120.00108 * 344.49509 * 7 2 1 10 10 C 1.47609 * 118.63930 * 331.69031 * 9 7 2 11 11 C 1.53949 * 112.14604 * 222.11235 * 10 9 7 12 12 C 1.50885 * 110.08891 * 40.56502 * 11 10 9 13 13 C 1.52563 * 109.34867 * 268.10999 * 12 11 10 14 14 C 1.47099 * 114.32996 * 85.03085 * 13 12 11 15 15 C 1.44573 * 118.64153 * 151.67122 * 9 7 2 16 16 H 1.09002 * 109.44985 * 209.34553 * 15 9 7 17 17 C 1.52995 * 109.45055 * 329.26367 * 15 9 7 18 18 N 1.46500 * 109.47469 * 305.00011 * 17 15 9 19 19 C 1.34771 * 120.00244 * 179.97438 * 18 17 15 20 20 O 1.21588 * 120.00134 * 0.02562 * 19 18 17 21 21 C 1.47573 * 120.00087 * 180.02562 * 19 18 17 22 22 C 1.38054 * 119.72897 * 180.02562 * 21 19 18 23 23 N 1.34879 * 119.94742 * 179.97438 * 22 21 19 24 24 H 0.97004 * 120.30416 * 180.02562 * 23 22 21 25 25 C 1.34955 * 119.38195 * 0.02562 * 23 22 21 26 26 O 1.21867 * 120.26441 * 180.02562 * 25 23 22 27 27 C 1.41783 * 119.46340 * 359.97438 * 25 23 22 28 28 N 1.30602 * 120.03161 * 359.73641 * 27 25 23 29 29 H 0.96998 * 119.99575 * 359.97438 * 1 2 3 30 30 H 1.09004 * 108.95065 * 342.80177 * 10 9 7 31 31 H 1.09007 * 108.94841 * 101.51800 * 10 9 7 32 32 H 1.09000 * 109.36734 * 160.75115 * 11 10 9 33 33 H 1.08994 * 109.36747 * 280.50452 * 11 10 9 34 34 H 1.08997 * 109.49117 * 28.07444 * 12 11 10 35 35 H 1.08994 * 109.48903 * 148.12701 * 12 11 10 36 36 H 1.09003 * 108.51338 * 206.28473 * 13 12 11 37 37 H 1.09003 * 108.51210 * 323.93147 * 13 12 11 38 38 H 1.08993 * 109.32934 * 176.93111 * 14 13 12 39 39 H 1.09002 * 109.32922 * 57.44835 * 14 13 12 40 40 H 1.08999 * 109.46877 * 65.00318 * 17 15 9 41 41 H 1.09009 * 109.47005 * 185.00089 * 17 15 9 42 42 H 0.97003 * 119.99163 * 0.02562 * 18 17 15 43 43 H 1.07994 * 120.02112 * 359.97438 * 22 21 19 44 44 H 1.07993 * 119.98345 * 180.02562 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0607 -1.2192 -0.2506 9 7 1.3629 -2.3667 0.3160 10 6 0.2009 -2.3058 1.2242 11 6 0.2095 -3.4493 2.2550 12 6 1.6119 -3.6798 2.7616 13 6 2.2913 -4.7423 1.9031 14 6 2.9176 -4.2222 0.6780 15 6 1.8455 -3.6047 -0.2536 16 1 1.0148 -4.3020 -0.3632 17 6 2.4618 -3.3279 -1.6263 18 7 1.4834 -2.6383 -2.4709 19 6 1.8078 -2.2909 -3.7320 20 8 2.9124 -2.5501 -4.1690 21 6 0.8224 -1.5958 -4.5826 22 6 1.1605 -1.2429 -5.8738 23 7 0.2631 -0.6079 -6.6552 24 1 0.4950 -0.3580 -7.5633 25 6 -0.9605 -0.3237 -6.1619 26 8 -1.7839 0.2492 -6.8540 27 6 -1.2805 -0.6978 -4.8322 28 7 -0.3966 -1.3169 -4.0967 29 1 -0.4849 0.8401 0.0004 30 1 0.2144 -1.3526 1.7529 31 1 -0.7134 -2.3699 0.6341 32 1 -0.4384 -3.1869 3.0913 33 1 -0.1578 -4.3618 1.7855 34 1 2.1770 -2.7495 2.7038 35 1 1.5734 -4.0182 3.7970 36 1 3.0582 -5.2330 2.5024 37 1 1.5467 -5.4862 1.6196 38 1 3.4224 -5.0358 0.1575 39 1 3.6485 -3.4582 0.9428 40 1 3.3456 -2.7009 -1.5080 41 1 2.7452 -4.2707 -2.0942 42 1 0.6022 -2.4311 -2.1221 43 1 2.1428 -1.4752 -6.2577 44 1 -2.2573 -0.4748 -4.4291 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969005118.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:30 Heat of formation + Delta-G solvation = -28.431717 kcal Electronic energy + Delta-G solvation = -28149.092450 eV Core-core repulsion = 24294.662105 eV Total energy + Delta-G solvation = -3854.430345 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.81510 -40.62241 -39.55262 -38.49764 -36.38710 -35.87664 -35.12947 -33.18213 -32.40729 -31.53329 -28.61464 -27.30143 -26.48815 -25.47323 -25.12408 -23.65751 -22.11576 -21.22232 -20.74076 -20.02755 -19.47257 -18.41007 -17.78471 -17.27332 -17.10274 -16.92052 -16.63917 -16.16461 -15.91805 -15.71818 -15.63159 -15.17046 -15.08957 -14.69557 -14.31965 -14.22381 -13.75288 -13.54378 -13.33394 -13.07197 -12.88030 -12.84039 -12.78580 -12.66748 -12.64824 -12.34675 -11.96890 -11.48700 -11.35699 -11.28628 -11.22143 -11.14422 -10.88718 -10.46145 -10.29302 -9.81616 -9.33612 -8.46095 -7.71838 -5.14211 -0.55166 0.11939 1.40866 1.44538 1.47279 1.51326 1.82955 2.40944 2.57314 2.71138 3.12486 3.15280 3.43297 3.66651 3.74971 3.92823 4.09586 4.15092 4.24814 4.32684 4.48189 4.56910 4.67036 4.72312 4.79653 4.91708 5.06074 5.14131 5.17836 5.18640 5.26489 5.31734 5.32311 5.43729 5.47680 5.60947 5.70535 5.74979 5.81251 5.86166 5.96103 6.40643 6.53963 6.56894 6.86691 7.33758 7.37367 8.08228 8.47635 9.31424 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013416 B = 0.004591 C = 0.004103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.540665 B = 6096.974823 C = 6822.007031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.023 4.023 3 Si 0.926 3.074 4 H -0.300 1.300 5 H -0.298 1.298 6 H -0.280 1.280 7 C -0.233 4.233 8 H 0.049 0.951 9 N -0.586 5.586 10 C 0.191 3.809 11 C -0.132 4.132 12 C -0.103 4.103 13 C -0.100 4.100 14 C -0.127 4.127 15 C 0.171 3.829 16 H 0.053 0.947 17 C 0.131 3.869 18 N -0.675 5.675 19 C 0.577 3.423 20 O -0.587 6.587 21 C -0.097 4.097 22 C 0.202 3.798 23 N -0.565 5.565 24 H 0.443 0.557 25 C 0.482 3.518 26 O -0.557 6.557 27 C 0.029 3.971 28 N -0.377 5.377 29 H 0.243 0.757 30 H 0.036 0.964 31 H 0.000 1.000 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.042 0.958 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.075 0.925 39 H 0.043 0.957 40 H 0.047 0.953 41 H 0.072 0.928 42 H 0.415 0.585 43 H 0.223 0.777 44 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.723 -8.150 -6.699 10.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.220 4.220 3 Si 0.758 3.242 4 H -0.228 1.228 5 H -0.225 1.225 6 H -0.206 1.206 7 C -0.364 4.364 8 H 0.067 0.933 9 N -0.309 5.309 10 C 0.066 3.934 11 C -0.171 4.171 12 C -0.141 4.141 13 C -0.138 4.138 14 C -0.168 4.168 15 C 0.063 3.937 16 H 0.071 0.929 17 C 0.006 3.994 18 N -0.321 5.321 19 C 0.363 3.637 20 O -0.470 6.470 21 C -0.221 4.221 22 C 0.064 3.936 23 N -0.198 5.198 24 H 0.286 0.714 25 C 0.278 3.722 26 O -0.435 6.435 27 C -0.161 4.161 28 N -0.092 5.092 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.018 0.982 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.061 0.939 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.093 0.907 39 H 0.062 0.938 40 H 0.066 0.934 41 H 0.090 0.910 42 H 0.251 0.749 43 H 0.239 0.761 44 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 1.775 -8.206 -6.445 10.584 hybrid contribution 0.202 2.041 -0.800 2.202 sum 1.977 -6.165 -7.245 9.716 Atomic orbital electron populations 1.70128 1.05306 1.24617 1.55396 1.25251 0.95517 0.99247 1.02033 0.85936 0.78614 0.83076 0.76621 1.22826 1.22453 1.20558 1.18903 0.91533 0.85602 1.40344 0.93282 1.43727 1.34068 1.01933 1.51132 1.20741 0.87597 0.95484 0.89556 1.21942 0.97253 0.99241 0.98689 1.20904 0.95916 0.98984 0.98278 1.20277 0.99835 0.97618 0.96059 1.21279 0.98472 0.99821 0.97181 1.20696 0.94902 0.88312 0.89754 0.92904 1.21547 0.91581 0.95514 0.90710 1.45600 1.18638 1.56421 1.11477 1.17464 0.85604 0.78448 0.82196 1.90704 1.22660 1.58851 1.74805 1.20445 0.94187 1.12932 0.94525 1.23451 0.95867 0.84641 0.89601 1.43467 1.12507 1.45968 1.17898 0.71353 1.18706 0.81846 0.81122 0.90478 1.90966 1.47519 1.43548 1.61517 1.24894 1.01429 1.00344 0.89423 1.67724 1.00681 1.04943 1.35897 0.94765 0.94510 0.98191 0.92247 0.92304 0.93864 0.91960 0.91940 0.92144 0.90678 0.93825 0.93443 0.90962 0.74854 0.76095 0.78321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.14 11.14 21.65 0.24 -48.90 16 2 C -0.02 -1.23 4.86 84.86 0.41 -0.81 16 3 Si 0.93 44.43 29.58 68.60 2.03 46.46 16 4 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 5 H -0.30 -14.50 7.11 99.48 0.71 -13.80 16 6 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 7 C -0.23 -11.48 7.62 84.04 0.64 -10.84 16 8 H 0.05 2.53 6.74 -2.91 -0.02 2.51 16 9 N -0.59 -25.22 1.77 -674.22 -1.20 -26.41 16 10 C 0.19 8.30 4.66 86.49 0.40 8.70 16 11 C -0.13 -4.44 5.71 30.23 0.17 -4.27 16 12 C -0.10 -3.22 5.51 29.76 0.16 -3.05 16 13 C -0.10 -2.75 5.16 28.61 0.15 -2.60 16 14 C -0.13 -3.86 5.06 29.40 0.15 -3.71 16 15 C 0.17 6.10 2.19 45.99 0.10 6.20 16 16 H 0.05 1.83 8.06 -2.39 -0.02 1.81 16 17 C 0.13 4.77 4.52 86.38 0.39 5.16 16 18 N -0.67 -26.18 4.71 -466.24 -2.19 -28.37 16 19 C 0.58 21.19 7.79 86.71 0.68 21.87 16 20 O -0.59 -22.55 16.28 -3.99 -0.06 -22.62 16 21 C -0.10 -3.02 6.71 41.21 0.28 -2.74 16 22 C 0.20 4.20 10.78 84.18 0.91 5.11 16 23 N -0.57 -10.37 5.28 -316.87 -1.67 -12.05 16 24 H 0.44 4.74 8.92 -92.71 -0.83 3.91 16 25 C 0.48 12.63 7.74 85.09 0.66 13.29 16 26 O -0.56 -17.51 17.95 -4.88 -0.09 -17.60 16 27 C 0.03 0.83 11.23 85.75 0.96 1.79 16 28 N -0.38 -12.61 9.62 -183.48 -1.77 -14.37 16 29 H 0.24 13.24 8.31 -92.71 -0.77 12.47 16 30 H 0.04 1.84 6.47 -2.39 -0.02 1.83 16 31 H 0.00 0.00 8.02 -2.38 -0.02 -0.02 16 32 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.06 1.81 7.31 -2.39 -0.02 1.80 16 34 H 0.04 1.62 7.48 -2.39 -0.02 1.61 16 35 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.06 1.53 7.35 -2.39 -0.02 1.51 16 38 H 0.07 1.91 8.11 -2.39 -0.02 1.89 16 39 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.05 1.94 6.84 -2.39 -0.02 1.92 16 41 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 42 H 0.41 17.64 7.39 -92.71 -0.69 16.95 16 43 H 0.22 3.15 7.58 -2.91 -0.02 3.13 16 44 H 0.20 5.12 8.06 -2.91 -0.02 5.10 16 Total: -1.00 -65.86 354.54 0.88 -64.98 By element: Atomic # 1 Polarization: 25.26 SS G_CDS: -0.47 Total: 24.79 kcal Atomic # 6 Polarization: 28.03 SS G_CDS: 6.06 Total: 34.09 kcal Atomic # 7 Polarization: -123.52 SS G_CDS: -6.59 Total: -130.11 kcal Atomic # 8 Polarization: -40.06 SS G_CDS: -0.15 Total: -40.21 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -65.86 0.88 -64.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969005118.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.551 kcal (2) G-P(sol) polarization free energy of solvation -65.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds