Wall clock time and date at job start Tue Mar 31 2020 12:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 120.00344 * 2 1 4 4 H 1.48498 * 109.46695 * 90.00460 * 3 2 1 5 5 H 1.48503 * 109.47261 * 330.00993 * 3 2 1 6 6 H 1.48496 * 109.47136 * 210.00390 * 3 2 1 7 7 C 1.38811 * 119.99636 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00703 * 19.65542 * 7 2 1 9 9 N 1.36936 * 119.99883 * 199.65988 * 7 2 1 10 10 C 1.47604 * 118.64574 * 28.61486 * 9 7 2 11 11 C 1.54296 * 111.94545 * 137.78021 * 10 9 7 12 12 C 1.50883 * 110.23224 * 319.70425 * 11 10 9 13 13 C 1.52564 * 109.35979 * 91.79842 * 12 11 10 14 14 C 1.47097 * 114.32490 * 274.98650 * 13 12 11 15 15 C 1.44585 * 118.64569 * 208.88944 * 9 7 2 16 16 H 1.08999 * 109.45193 * 150.66371 * 15 9 7 17 17 C 1.52998 * 109.44959 * 30.71178 * 15 9 7 18 18 N 1.46499 * 109.46829 * 55.00248 * 17 15 9 19 19 C 1.34783 * 119.99579 * 179.97438 * 18 17 15 20 20 O 1.21588 * 120.00467 * 0.02562 * 19 18 17 21 21 C 1.47578 * 119.99705 * 179.97438 * 19 18 17 22 22 C 1.38043 * 119.72733 * 180.02562 * 21 19 18 23 23 N 1.34885 * 119.94994 * 179.97438 * 22 21 19 24 24 H 0.97000 * 120.30873 * 179.97438 * 23 22 21 25 25 C 1.34953 * 119.38197 * 0.02562 * 23 22 21 26 26 O 1.21862 * 120.27082 * 180.02562 * 25 23 22 27 27 C 1.41788 * 119.45890 * 359.97438 * 25 23 22 28 28 N 1.30604 * 120.03603 * 359.74432 * 27 25 23 29 29 H 0.96999 * 120.00276 * 174.89526 * 1 2 3 30 30 H 1.09002 * 108.95016 * 258.58208 * 10 9 7 31 31 H 1.09002 * 108.94612 * 17.20554 * 10 9 7 32 32 H 1.08998 * 109.36977 * 199.42388 * 11 10 9 33 33 H 1.09000 * 109.22454 * 79.89265 * 11 10 9 34 34 H 1.08996 * 109.49251 * 331.83169 * 12 11 10 35 35 H 1.09006 * 109.48952 * 211.76091 * 12 11 10 36 36 H 1.09003 * 108.51472 * 153.72735 * 13 12 11 37 37 H 1.08999 * 108.39102 * 36.14999 * 13 12 11 38 38 H 1.08994 * 109.32603 * 302.53405 * 14 13 12 39 39 H 1.09005 * 109.18289 * 182.97112 * 14 13 12 40 40 H 1.09003 * 109.46931 * 175.00381 * 17 15 9 41 41 H 1.09006 * 109.47255 * 295.00649 * 17 15 9 42 42 H 0.96999 * 120.00540 * 0.02562 * 18 17 15 43 43 H 1.07993 * 120.02996 * 359.95704 * 22 21 19 44 44 H 1.08004 * 119.98278 * 180.02562 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0462 1.4001 5 1 1.4477 2.6527 -0.6998 6 1 3.5478 1.4400 -0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.5174 -2.1101 -0.3155 9 7 3.3197 -1.2370 0.3984 10 6 3.7869 -0.2391 1.3806 11 6 4.7067 -0.8675 2.4482 12 6 4.1793 -2.2196 2.8607 13 6 4.8170 -3.2983 1.9904 14 6 4.1334 -3.5245 0.7078 15 6 4.1891 -2.2459 -0.1642 16 1 5.2117 -1.8696 -0.1917 17 6 3.7304 -2.5788 -1.5853 18 7 3.6711 -1.3494 -2.3798 19 6 3.2897 -1.3996 -3.6716 20 8 2.9945 -2.4651 -4.1774 21 6 3.2295 -0.1611 -4.4718 22 6 2.8377 -0.2189 -5.7942 23 7 2.7805 0.9104 -6.5296 24 1 2.5062 0.8758 -7.4594 25 6 3.1093 2.0888 -5.9600 26 8 3.0630 3.1191 -6.6092 27 6 3.5082 2.1186 -4.5997 28 7 3.5506 1.0125 -3.9065 29 1 -0.4850 -0.8367 -0.0747 30 1 4.3324 0.5454 0.8559 31 1 2.9218 0.2034 1.8745 32 1 4.7479 -0.2142 3.3197 33 1 5.7095 -0.9810 2.0362 34 1 3.0971 -2.2422 2.7333 35 1 4.4266 -2.4028 3.9065 36 1 4.8238 -4.2344 2.5489 37 1 5.8484 -3.0107 1.7869 38 1 3.0926 -3.7884 0.8953 39 1 4.6235 -4.3427 0.1801 40 1 4.4362 -3.2727 -2.0418 41 1 2.7418 -3.0367 -1.5502 42 1 3.9069 -0.4993 -1.9765 43 1 2.5774 -1.1675 -6.2398 44 1 3.7729 3.0570 -4.1352 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969005119.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:34 Heat of formation + Delta-G solvation = -7.594087 kcal Electronic energy + Delta-G solvation = -28286.783904 eV Core-core repulsion = 24433.257147 eV Total energy + Delta-G solvation = -3853.526757 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.79601 -39.34513 -38.32104 -37.35675 -35.36416 -34.60535 -33.54882 -31.94369 -31.21965 -30.45406 -27.31020 -25.75229 -25.46827 -24.47317 -23.30637 -22.33638 -20.94185 -19.88970 -19.59108 -18.79973 -18.45306 -17.26347 -16.74386 -16.12127 -15.97745 -15.57283 -15.30631 -15.10107 -14.72857 -14.47451 -14.14579 -14.03490 -13.90051 -13.23937 -13.06047 -12.81402 -12.55286 -12.24430 -12.16274 -12.01094 -11.87561 -11.59696 -11.43350 -11.30529 -10.79870 -10.43845 -10.15552 -10.14395 -10.12900 -9.93726 -9.70541 -9.43983 -9.37447 -9.03622 -8.55910 -8.45644 -8.19733 -7.01882 -6.21635 -3.32654 0.39106 1.21010 2.37099 3.00222 3.41195 3.52903 3.59070 3.68336 3.85182 4.11973 4.16584 4.59101 4.69986 4.85203 4.94479 5.22162 5.24120 5.33424 5.42086 5.52451 5.69942 5.77075 5.85612 5.87784 5.96296 6.01968 6.16753 6.20021 6.22152 6.34765 6.41409 6.44966 6.49681 6.59302 6.64098 6.74171 6.82321 6.93551 7.00162 7.08774 7.39025 7.57193 8.09092 8.16353 8.48742 8.70206 9.07850 9.65272 10.16544 11.17103 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015379 B = 0.004749 C = 0.004164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.221843 B = 5894.805762 C = 6722.349711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.009 4.009 3 Si 1.060 2.940 4 H -0.300 1.300 5 H -0.305 1.305 6 H -0.277 1.277 7 C -0.341 4.341 8 H 0.065 0.935 9 N -0.595 5.595 10 C 0.124 3.876 11 C -0.132 4.132 12 C -0.109 4.109 13 C -0.102 4.102 14 C -0.134 4.134 15 C 0.173 3.827 16 H 0.047 0.953 17 C 0.130 3.870 18 N -0.671 5.671 19 C 0.582 3.418 20 O -0.564 6.564 21 C -0.061 4.061 22 C 0.165 3.835 23 N -0.586 5.586 24 H 0.423 0.577 25 C 0.479 3.521 26 O -0.529 6.529 27 C 0.039 3.961 28 N -0.364 5.364 29 H 0.262 0.738 30 H 0.023 0.977 31 H 0.070 0.930 32 H 0.055 0.945 33 H 0.051 0.949 34 H 0.077 0.923 35 H 0.044 0.956 36 H 0.043 0.957 37 H 0.047 0.953 38 H 0.065 0.935 39 H 0.050 0.950 40 H 0.055 0.945 41 H 0.073 0.927 42 H 0.415 0.585 43 H 0.190 0.810 44 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.272 -2.059 -6.107 12.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.210 4.210 3 Si 0.893 3.107 4 H -0.228 1.228 5 H -0.233 1.233 6 H -0.203 1.203 7 C -0.470 4.470 8 H 0.083 0.917 9 N -0.318 5.318 10 C 0.000 4.000 11 C -0.171 4.171 12 C -0.146 4.146 13 C -0.139 4.139 14 C -0.175 4.175 15 C 0.064 3.936 16 H 0.065 0.935 17 C 0.006 3.994 18 N -0.319 5.319 19 C 0.367 3.633 20 O -0.445 6.445 21 C -0.185 4.185 22 C 0.029 3.971 23 N -0.220 5.220 24 H 0.263 0.737 25 C 0.274 3.726 26 O -0.405 6.405 27 C -0.151 4.151 28 N -0.079 5.079 29 H 0.072 0.928 30 H 0.040 0.960 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.095 0.905 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.084 0.916 39 H 0.069 0.931 40 H 0.073 0.927 41 H 0.091 0.909 42 H 0.252 0.748 43 H 0.207 0.793 44 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 10.119 -0.676 -5.802 11.684 hybrid contribution -0.260 -1.290 -0.954 1.625 sum 9.858 -1.966 -6.756 12.112 Atomic orbital electron populations 1.70884 1.06253 1.29983 1.49041 1.26052 0.96494 1.00865 0.97626 0.83918 0.74931 0.76179 0.75690 1.22784 1.23308 1.20311 1.20065 0.86562 0.94962 1.45415 0.91706 1.44005 1.08280 1.34467 1.45074 1.21776 0.97063 0.91314 0.89887 1.21912 0.99160 0.97166 0.98866 1.20954 1.02377 0.94300 0.97011 1.20298 0.99073 0.98134 0.96408 1.21328 1.01273 0.98448 0.96437 1.20539 0.93497 0.89774 0.89747 0.93522 1.21537 1.01675 0.85629 0.90565 1.45503 1.64669 1.12453 1.09262 1.17107 0.77874 0.85986 0.82375 1.90745 1.52034 1.29553 1.72130 1.20616 1.12268 0.93659 0.91938 1.23173 0.89926 0.91658 0.92330 1.43629 1.54590 1.07836 1.15899 0.73730 1.18787 0.80061 0.82912 0.90806 1.90979 1.53993 1.30655 1.64887 1.24764 1.02663 0.98395 0.89306 1.67775 1.05189 0.97912 1.37066 0.92768 0.95966 0.91179 0.92662 0.92993 0.90466 0.93687 0.93820 0.93415 0.91621 0.93103 0.92672 0.90864 0.74776 0.79337 0.79051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.66 13.70 55.49 0.76 -26.90 16 2 C -0.01 -0.23 5.15 -17.43 -0.09 -0.32 16 3 Si 1.06 25.34 24.39 -169.99 -4.15 21.19 16 4 H -0.30 -6.91 6.64 56.52 0.38 -6.53 16 5 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 6 H -0.28 -6.01 6.41 56.52 0.36 -5.65 16 7 C -0.34 -8.56 7.91 -15.06 -0.12 -8.68 16 8 H 0.07 1.81 6.95 -52.49 -0.36 1.44 16 9 N -0.60 -12.44 1.53 -164.25 -0.25 -12.69 16 10 C 0.12 2.48 4.03 -2.76 -0.01 2.47 16 11 C -0.13 -2.14 5.71 -27.12 -0.15 -2.29 16 12 C -0.11 -1.74 5.51 -28.02 -0.15 -1.89 16 13 C -0.10 -1.49 5.16 -29.79 -0.15 -1.64 16 14 C -0.13 -2.15 5.06 -28.58 -0.14 -2.30 16 15 C 0.17 3.08 2.19 -67.97 -0.15 2.93 16 16 H 0.05 0.79 8.06 -51.93 -0.42 0.37 16 17 C 0.13 2.38 4.52 -4.04 -0.02 2.36 16 18 N -0.67 -12.72 4.71 -61.33 -0.29 -13.01 16 19 C 0.58 10.65 7.79 -12.45 -0.10 10.55 16 20 O -0.56 -11.04 16.28 5.29 0.09 -10.96 16 21 C -0.06 -0.95 6.71 -83.11 -0.56 -1.50 16 22 C 0.16 1.86 10.77 -16.28 -0.18 1.68 16 23 N -0.59 -5.88 5.28 -14.20 -0.08 -5.95 16 24 H 0.42 2.79 8.92 -40.82 -0.36 2.43 16 25 C 0.48 6.33 7.74 -14.82 -0.11 6.21 16 26 O -0.53 -8.31 17.95 5.04 0.09 -8.22 16 27 C 0.04 0.54 11.23 -16.72 -0.19 0.35 16 28 N -0.36 -5.84 9.62 -9.34 -0.09 -5.93 16 29 H 0.26 7.90 8.73 -40.82 -0.36 7.54 16 30 H 0.02 0.45 5.91 -51.93 -0.31 0.14 16 31 H 0.07 1.57 5.34 -51.93 -0.28 1.29 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.05 0.77 7.31 -51.93 -0.38 0.39 16 34 H 0.08 1.47 7.49 -51.93 -0.39 1.08 16 35 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.05 0.65 7.35 -51.93 -0.38 0.27 16 38 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.05 0.71 8.11 -51.93 -0.42 0.29 16 40 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.07 1.53 6.85 -51.93 -0.36 1.17 16 42 H 0.41 8.20 7.20 -40.82 -0.29 7.91 16 43 H 0.19 1.64 7.58 -52.49 -0.40 1.24 16 44 H 0.19 2.21 8.06 -52.48 -0.42 1.79 16 LS Contribution 347.69 15.07 5.24 5.24 Total: -1.00 -32.47 347.69 -6.91 -39.37 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -6.11 Total: 9.92 kcal Atomic # 6 Polarization: 10.06 SS G_CDS: -2.13 Total: 7.94 kcal Atomic # 7 Polarization: -64.54 SS G_CDS: 0.06 Total: -64.48 kcal Atomic # 8 Polarization: -19.36 SS G_CDS: 0.18 Total: -19.18 kcal Atomic # 14 Polarization: 25.34 SS G_CDS: -4.15 Total: 21.19 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.47 -6.91 -39.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969005119.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.779 kcal (2) G-P(sol) polarization free energy of solvation -32.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds