Wall clock time and date at job start Tue Mar 31 2020 12:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86797 * 120.00344 * 2 1 4 4 H 1.48498 * 109.46695 * 90.00460 * 3 2 1 5 5 H 1.48503 * 109.47261 * 330.00993 * 3 2 1 6 6 H 1.48496 * 109.47136 * 210.00390 * 3 2 1 7 7 C 1.38811 * 119.99636 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00703 * 19.65542 * 7 2 1 9 9 N 1.36936 * 119.99883 * 199.65988 * 7 2 1 10 10 C 1.47604 * 118.64574 * 28.61486 * 9 7 2 11 11 C 1.54296 * 111.94545 * 137.78021 * 10 9 7 12 12 C 1.50883 * 110.23224 * 319.70425 * 11 10 9 13 13 C 1.52564 * 109.35979 * 91.79842 * 12 11 10 14 14 C 1.47097 * 114.32490 * 274.98650 * 13 12 11 15 15 C 1.44585 * 118.64569 * 208.88944 * 9 7 2 16 16 H 1.08999 * 109.45193 * 150.66371 * 15 9 7 17 17 C 1.52998 * 109.44959 * 30.71178 * 15 9 7 18 18 N 1.46499 * 109.46829 * 55.00248 * 17 15 9 19 19 C 1.34783 * 119.99579 * 179.97438 * 18 17 15 20 20 O 1.21588 * 120.00467 * 0.02562 * 19 18 17 21 21 C 1.47578 * 119.99705 * 179.97438 * 19 18 17 22 22 C 1.38043 * 119.72733 * 180.02562 * 21 19 18 23 23 N 1.34885 * 119.94994 * 179.97438 * 22 21 19 24 24 H 0.97000 * 120.30873 * 179.97438 * 23 22 21 25 25 C 1.34953 * 119.38197 * 0.02562 * 23 22 21 26 26 O 1.21862 * 120.27082 * 180.02562 * 25 23 22 27 27 C 1.41788 * 119.45890 * 359.97438 * 25 23 22 28 28 N 1.30604 * 120.03603 * 359.74432 * 27 25 23 29 29 H 0.96999 * 120.00276 * 174.89526 * 1 2 3 30 30 H 1.09002 * 108.95016 * 258.58208 * 10 9 7 31 31 H 1.09002 * 108.94612 * 17.20554 * 10 9 7 32 32 H 1.08998 * 109.36977 * 199.42388 * 11 10 9 33 33 H 1.09000 * 109.22454 * 79.89265 * 11 10 9 34 34 H 1.08996 * 109.49251 * 331.83169 * 12 11 10 35 35 H 1.09006 * 109.48952 * 211.76091 * 12 11 10 36 36 H 1.09003 * 108.51472 * 153.72735 * 13 12 11 37 37 H 1.08999 * 108.39102 * 36.14999 * 13 12 11 38 38 H 1.08994 * 109.32603 * 302.53405 * 14 13 12 39 39 H 1.09005 * 109.18289 * 182.97112 * 14 13 12 40 40 H 1.09003 * 109.46931 * 175.00381 * 17 15 9 41 41 H 1.09006 * 109.47255 * 295.00649 * 17 15 9 42 42 H 0.96999 * 120.00540 * 0.02562 * 18 17 15 43 43 H 1.07993 * 120.02996 * 359.95704 * 22 21 19 44 44 H 1.08004 * 119.98278 * 180.02562 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0462 1.4001 5 1 1.4477 2.6527 -0.6998 6 1 3.5478 1.4400 -0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.5174 -2.1101 -0.3155 9 7 3.3197 -1.2370 0.3984 10 6 3.7869 -0.2391 1.3806 11 6 4.7067 -0.8675 2.4482 12 6 4.1793 -2.2196 2.8607 13 6 4.8170 -3.2983 1.9904 14 6 4.1334 -3.5245 0.7078 15 6 4.1891 -2.2459 -0.1642 16 1 5.2117 -1.8696 -0.1917 17 6 3.7304 -2.5788 -1.5853 18 7 3.6711 -1.3494 -2.3798 19 6 3.2897 -1.3996 -3.6716 20 8 2.9945 -2.4651 -4.1774 21 6 3.2295 -0.1611 -4.4718 22 6 2.8377 -0.2189 -5.7942 23 7 2.7805 0.9104 -6.5296 24 1 2.5062 0.8758 -7.4594 25 6 3.1093 2.0888 -5.9600 26 8 3.0630 3.1191 -6.6092 27 6 3.5082 2.1186 -4.5997 28 7 3.5506 1.0125 -3.9065 29 1 -0.4850 -0.8367 -0.0747 30 1 4.3324 0.5454 0.8559 31 1 2.9218 0.2034 1.8745 32 1 4.7479 -0.2142 3.3197 33 1 5.7095 -0.9810 2.0362 34 1 3.0971 -2.2422 2.7333 35 1 4.4266 -2.4028 3.9065 36 1 4.8238 -4.2344 2.5489 37 1 5.8484 -3.0107 1.7869 38 1 3.0926 -3.7884 0.8953 39 1 4.6235 -4.3427 0.1801 40 1 4.4362 -3.2727 -2.0418 41 1 2.7418 -3.0367 -1.5502 42 1 3.9069 -0.4993 -1.9765 43 1 2.5774 -1.1675 -6.2398 44 1 3.7729 3.0570 -4.1352 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969005119.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:28:33 Heat of formation + Delta-G solvation = -32.652795 kcal Electronic energy + Delta-G solvation = -28287.870531 eV Core-core repulsion = 24433.257147 eV Total energy + Delta-G solvation = -3854.613384 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.86159 -40.76292 -39.74174 -38.55464 -36.45621 -36.00082 -35.26474 -33.34859 -33.07878 -31.60446 -28.80156 -27.25369 -26.54521 -25.70525 -24.97162 -23.74796 -22.24888 -21.31201 -21.12119 -20.11479 -19.53528 -18.84183 -18.12764 -17.26828 -17.23046 -17.05513 -16.74843 -16.55411 -15.89288 -15.77854 -15.67430 -15.50912 -15.18955 -14.66974 -14.43460 -14.33592 -14.11183 -13.75368 -13.62211 -13.44228 -12.96239 -12.93106 -12.84522 -12.73450 -12.44768 -12.04100 -11.73372 -11.46614 -11.41771 -11.36677 -11.24106 -11.07717 -10.84719 -10.55916 -10.49003 -9.93312 -9.39967 -8.92311 -8.32486 -5.40067 -0.59718 0.05877 1.40879 1.46875 1.61760 1.74555 1.76383 2.31275 2.62473 2.64161 3.03996 3.09985 3.18035 3.44619 3.68778 3.86677 3.95512 4.03155 4.19076 4.21414 4.33075 4.36551 4.50835 4.53846 4.70518 4.83084 4.84134 4.92036 5.01802 5.12950 5.13423 5.14782 5.18145 5.24172 5.36151 5.41212 5.51265 5.55170 5.61955 5.71726 5.97875 6.32919 6.40397 6.50415 6.73985 7.05975 7.26376 7.77620 8.16507 9.01911 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.015379 B = 0.004749 C = 0.004164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.221843 B = 5894.805762 C = 6722.349711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.065 4.065 3 Si 1.094 2.906 4 H -0.287 1.287 5 H -0.327 1.327 6 H -0.243 1.243 7 C -0.293 4.293 8 H 0.026 0.974 9 N -0.601 5.601 10 C 0.117 3.883 11 C -0.124 4.124 12 C -0.108 4.108 13 C -0.101 4.101 14 C -0.126 4.126 15 C 0.170 3.830 16 H 0.074 0.926 17 C 0.133 3.867 18 N -0.681 5.681 19 C 0.578 3.422 20 O -0.584 6.584 21 C -0.100 4.100 22 C 0.207 3.793 23 N -0.565 5.565 24 H 0.444 0.556 25 C 0.482 3.518 26 O -0.553 6.553 27 C 0.031 3.969 28 N -0.388 5.388 29 H 0.242 0.758 30 H 0.033 0.967 31 H 0.039 0.961 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.034 0.966 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.031 0.969 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.035 0.965 42 H 0.411 0.589 43 H 0.222 0.778 44 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.548 -2.255 -6.558 15.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.259 4.259 3 Si 0.923 3.077 4 H -0.214 1.214 5 H -0.257 1.257 6 H -0.167 1.167 7 C -0.423 4.423 8 H 0.044 0.956 9 N -0.325 5.325 10 C -0.007 4.007 11 C -0.163 4.163 12 C -0.146 4.146 13 C -0.139 4.139 14 C -0.167 4.167 15 C 0.063 3.937 16 H 0.092 0.908 17 C 0.009 3.991 18 N -0.328 5.328 19 C 0.364 3.636 20 O -0.467 6.467 21 C -0.223 4.223 22 C 0.069 3.931 23 N -0.198 5.198 24 H 0.287 0.713 25 C 0.279 3.721 26 O -0.431 6.431 27 C -0.159 4.159 28 N -0.104 5.104 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.057 0.943 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.053 0.947 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.049 0.951 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.054 0.946 42 H 0.247 0.753 43 H 0.238 0.762 44 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 13.455 -0.906 -6.265 14.870 hybrid contribution -1.272 -1.370 -0.874 2.064 sum 12.184 -2.277 -7.139 14.303 Atomic orbital electron populations 1.71016 1.07769 1.28701 1.53902 1.27008 0.96262 1.03995 0.98643 0.83527 0.75147 0.72656 0.76386 1.21442 1.25669 1.16669 1.19732 0.88144 0.92813 1.41652 0.95642 1.44042 1.07132 1.35399 1.45934 1.21841 0.96824 0.91456 0.90580 1.21861 0.99126 0.97116 0.98184 1.20941 0.99756 0.94988 0.98903 1.20293 0.99724 0.98593 0.95272 1.21250 0.99822 0.98162 0.97434 1.20775 0.93853 0.89676 0.89407 0.90799 1.21507 1.00205 0.85991 0.91405 1.45577 1.65251 1.12193 1.09776 1.17506 0.76941 0.86829 0.82284 1.90717 1.52894 1.30606 1.72464 1.20332 1.15945 0.92677 0.93394 1.23420 0.86107 0.92714 0.90829 1.43490 1.52917 1.06699 1.16743 0.71262 1.18703 0.79647 0.83201 0.90598 1.90977 1.55025 1.31660 1.65391 1.25016 1.02733 0.98411 0.89699 1.67660 1.06129 0.98485 1.38084 0.94853 0.94960 0.94255 0.90894 0.90411 0.94677 0.91343 0.92119 0.90996 0.95054 0.90455 0.90321 0.94627 0.75269 0.76197 0.77555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.48 13.70 21.65 0.30 -61.19 16 2 C -0.07 -3.69 5.15 84.86 0.44 -3.25 16 3 Si 1.09 52.02 24.39 68.60 1.67 53.69 16 4 H -0.29 -12.91 6.64 99.48 0.66 -12.25 16 5 H -0.33 -16.67 7.11 99.48 0.71 -15.97 16 6 H -0.24 -9.99 6.41 99.48 0.64 -9.35 16 7 C -0.29 -15.27 7.91 84.03 0.66 -14.61 16 8 H 0.03 1.53 6.95 -2.91 -0.02 1.51 16 9 N -0.60 -24.90 1.53 -673.56 -1.03 -25.94 16 10 C 0.12 4.47 4.03 86.61 0.35 4.82 16 11 C -0.12 -3.59 5.71 30.35 0.17 -3.41 16 12 C -0.11 -3.18 5.51 29.76 0.16 -3.01 16 13 C -0.10 -2.62 5.16 28.61 0.15 -2.47 16 14 C -0.13 -3.82 5.06 29.40 0.15 -3.67 16 15 C 0.17 5.78 2.19 45.98 0.10 5.88 16 16 H 0.07 2.19 8.06 -2.39 -0.02 2.18 16 17 C 0.13 4.84 4.52 86.38 0.39 5.23 16 18 N -0.68 -25.59 4.71 -466.21 -2.19 -27.78 16 19 C 0.58 20.94 7.79 86.71 0.68 21.62 16 20 O -0.58 -22.67 16.28 -3.99 -0.06 -22.73 16 21 C -0.10 -2.99 6.71 41.21 0.28 -2.71 16 22 C 0.21 4.15 10.77 84.18 0.91 5.06 16 23 N -0.57 -9.81 5.28 -316.88 -1.67 -11.48 16 24 H 0.44 4.39 8.92 -92.71 -0.83 3.56 16 25 C 0.48 11.87 7.74 85.09 0.66 12.53 16 26 O -0.55 -16.48 17.95 -4.87 -0.09 -16.57 16 27 C 0.03 0.82 11.23 85.75 0.96 1.79 16 28 N -0.39 -12.07 9.62 -183.47 -1.77 -13.83 16 29 H 0.24 15.70 8.73 -92.71 -0.81 14.89 16 30 H 0.03 1.19 5.91 -2.39 -0.01 1.17 16 31 H 0.04 1.75 5.34 -2.39 -0.01 1.73 16 32 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.08 1.89 7.31 -2.39 -0.02 1.88 16 34 H 0.03 1.32 7.49 -2.39 -0.02 1.30 16 35 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 36 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.07 1.57 7.35 -2.39 -0.02 1.56 16 38 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.08 1.94 8.11 -2.38 -0.02 1.92 16 40 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 41 H 0.04 1.55 6.85 -2.38 -0.02 1.53 16 42 H 0.41 15.92 7.20 -92.71 -0.67 15.25 16 43 H 0.22 3.07 7.58 -2.91 -0.02 3.05 16 44 H 0.21 4.54 8.06 -2.91 -0.02 4.52 16 Total: -1.00 -75.68 347.69 0.61 -75.06 By element: Atomic # 1 Polarization: 27.57 SS G_CDS: -0.60 Total: 26.97 kcal Atomic # 6 Polarization: 17.73 SS G_CDS: 6.06 Total: 23.79 kcal Atomic # 7 Polarization: -133.85 SS G_CDS: -6.37 Total: -140.22 kcal Atomic # 8 Polarization: -39.14 SS G_CDS: -0.15 Total: -39.30 kcal Atomic # 14 Polarization: 52.02 SS G_CDS: 1.67 Total: 53.69 kcal Total: -75.68 0.61 -75.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969005119.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.412 kcal (2) G-P(sol) polarization free energy of solvation -75.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds