Wall clock time and date at job start Tue Mar 31 2020 12:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 120.00192 * 2 1 4 4 H 1.48500 * 109.47037 * 269.99632 * 3 2 1 5 5 H 1.48502 * 109.46919 * 29.99512 * 3 2 1 6 6 H 1.48497 * 109.46992 * 149.99502 * 3 2 1 7 7 C 1.38810 * 119.99828 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00440 * 0.02562 * 7 2 1 9 9 N 1.36939 * 119.99923 * 180.02562 * 7 2 1 10 10 C 1.46500 * 120.00030 * 180.02562 * 9 7 2 11 11 H 1.08998 * 109.47186 * 325.00153 * 10 9 7 12 12 C 1.52998 * 109.47295 * 84.99940 * 10 9 7 13 13 C 1.52998 * 109.47298 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.47323 * 299.99926 * 13 12 10 15 15 C 1.52998 * 109.46873 * 59.99813 * 14 13 12 16 16 H 1.09003 * 109.47250 * 60.00152 * 15 14 13 17 17 N 1.46495 * 109.47151 * 180.02562 * 15 14 13 18 18 C 1.34788 * 119.99972 * 275.00112 * 17 15 14 19 19 O 1.21570 * 119.99499 * 359.97438 * 18 17 15 20 20 C 1.47715 * 119.99751 * 180.02562 * 18 17 15 21 21 C 1.40950 * 125.97276 * 179.75123 * 20 18 17 22 22 C 1.36169 * 107.95051 * 179.53727 * 21 20 18 23 23 N 1.35804 * 107.30765 * 0.98784 * 22 21 20 24 24 N 1.31840 * 125.97968 * 359.97438 * 20 18 17 25 25 C 1.47425 * 108.06740 * 178.86697 * 23 22 21 26 26 C 1.54648 * 102.35239 * 344.68137 * 25 23 22 27 27 O 1.36125 * 140.88171 * 180.66897 * 22 21 20 28 28 C 1.52998 * 109.47298 * 300.00202 * 15 14 13 29 29 H 0.96999 * 119.99921 * 0.02562 * 1 2 3 30 30 H 0.96998 * 120.00275 * 0.02562 * 9 7 2 31 31 H 1.09003 * 109.47250 * 60.00127 * 12 10 9 32 32 H 1.09001 * 109.47227 * 300.00444 * 12 10 9 33 33 H 1.09000 * 109.47097 * 180.02562 * 13 12 10 34 34 H 1.08998 * 109.47247 * 60.00174 * 13 12 10 35 35 H 1.08998 * 109.47161 * 300.00301 * 14 13 12 36 36 H 1.08998 * 109.47050 * 180.02562 * 14 13 12 37 37 H 0.97000 * 120.00061 * 95.00069 * 17 15 14 38 38 H 1.08007 * 126.02762 * 359.60255 * 21 20 18 39 39 H 1.08993 * 110.83651 * 226.46405 * 25 23 22 40 40 H 1.09003 * 110.99998 * 102.97129 * 25 23 22 41 41 H 1.08999 * 110.85011 * 266.66434 * 26 25 23 42 42 H 1.09001 * 110.85654 * 143.03031 * 26 25 23 43 43 H 1.09000 * 109.47097 * 179.97438 * 28 15 14 44 44 H 1.08998 * 109.47247 * 299.99826 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4709 0.0011 11 1 3.5645 -3.2066 0.5901 12 6 4.2588 -2.9752 -1.4360 13 6 5.0232 -4.3005 -1.4359 14 6 6.4102 -4.0893 -0.8255 15 6 6.2635 -3.5850 0.6115 16 1 5.7155 -4.3205 1.2005 17 7 7.5915 -3.3822 1.1958 18 6 8.2436 -4.4168 1.7624 19 8 7.7295 -5.5181 1.7890 20 6 9.5824 -4.2121 2.3521 21 6 10.3712 -5.1986 2.9778 22 6 11.5350 -4.6148 3.3765 23 7 11.4674 -3.3028 3.0325 24 7 10.2468 -3.0740 2.3888 25 6 12.7095 -2.6478 3.4815 26 6 13.2941 -3.6871 4.4663 27 8 12.7092 -4.9154 3.9961 28 6 5.4991 -2.2597 0.6115 29 1 -0.4850 0.8400 -0.0004 30 1 3.8646 -0.3622 0.0014 31 1 4.8064 -2.2395 -2.0251 32 1 3.2707 -3.1260 -1.8707 33 1 5.1281 -4.6595 -2.4597 34 1 4.4752 -5.0360 -0.8470 35 1 6.9582 -3.3538 -1.4144 36 1 6.9549 -5.0334 -0.8259 37 1 8.0015 -2.5034 1.1749 38 1 10.1007 -6.2351 3.1157 39 1 12.4906 -1.7103 3.9924 40 1 13.3882 -2.4821 2.6449 41 1 12.9794 -3.4735 5.4878 42 1 14.3811 -3.7222 4.3933 43 1 5.3942 -1.9007 1.6353 44 1 6.0471 -1.5242 0.0225 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981139309.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:16 Heat of formation + Delta-G solvation = 39.204114 kcal Electronic energy + Delta-G solvation = -26376.433262 eV Core-core repulsion = 22524.935827 eV Total energy + Delta-G solvation = -3851.497435 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.72140 -40.14077 -38.88683 -37.83370 -34.81781 -33.78878 -33.35727 -31.32632 -30.66540 -29.41099 -29.16796 -28.16007 -25.01356 -23.55860 -23.16821 -22.03841 -21.77129 -20.90638 -20.24924 -19.49327 -18.27268 -17.64810 -17.28429 -16.75234 -16.41880 -15.85859 -15.50508 -15.27402 -14.75185 -14.54529 -14.48186 -14.06472 -13.92990 -13.69366 -13.50003 -13.27711 -13.21024 -12.85200 -12.67608 -12.25981 -12.21363 -11.82308 -11.34323 -11.24443 -11.01127 -10.96858 -10.83125 -10.47334 -10.34367 -10.30598 -10.03516 -9.78189 -9.65056 -9.56754 -9.04557 -8.93782 -8.87181 -7.25145 -5.74789 -3.10292 0.95600 1.37664 1.73139 2.30139 3.05556 3.19496 3.38273 3.38686 3.41021 3.46267 3.96310 4.02860 4.33062 4.48540 4.60582 4.64485 4.81642 4.84529 4.91954 5.03286 5.17073 5.28850 5.47581 5.49492 5.54561 5.60476 5.65456 5.81382 5.84390 5.95281 5.98696 6.09910 6.23247 6.25384 6.36903 6.42293 6.50111 6.54535 6.67494 6.91711 6.99609 7.06058 7.45584 8.02142 8.05403 8.44358 9.22819 9.95297 10.15064 11.43584 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.019743 B = 0.002493 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.887334 B =11228.813371 C =12197.469911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.003 3.997 3 Si 0.884 3.116 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.240 4.240 8 H 0.091 0.909 9 N -0.749 5.749 10 C 0.188 3.812 11 H 0.058 0.942 12 C -0.137 4.137 13 C -0.114 4.114 14 C -0.126 4.126 15 C 0.149 3.851 16 H 0.094 0.906 17 N -0.707 5.707 18 C 0.602 3.398 19 O -0.520 6.520 20 C 0.058 3.942 21 C -0.212 4.212 22 C 0.233 3.767 23 N -0.413 5.413 24 N -0.218 5.218 25 C 0.097 3.903 26 C 0.041 3.959 27 O -0.279 6.279 28 C -0.134 4.134 29 H 0.259 0.741 30 H 0.360 0.640 31 H 0.054 0.946 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.406 0.594 38 H 0.167 0.833 39 H 0.114 0.886 40 H 0.106 0.894 41 H 0.095 0.905 42 H 0.131 0.869 43 H 0.070 0.930 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.422 -7.078 6.875 31.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.193 4.193 3 Si 0.715 3.285 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.370 4.370 8 H 0.109 0.891 9 N -0.390 5.390 10 C 0.078 3.922 11 H 0.076 0.924 12 C -0.178 4.178 13 C -0.153 4.153 14 C -0.164 4.164 15 C 0.045 3.955 16 H 0.112 0.888 17 N -0.357 5.357 18 C 0.384 3.616 19 O -0.393 6.393 20 C -0.109 4.109 21 C -0.242 4.242 22 C 0.065 3.935 23 N -0.210 5.210 24 N -0.048 5.048 25 C -0.024 4.024 26 C -0.035 4.035 27 O -0.185 6.185 28 C -0.173 4.173 29 H 0.069 0.931 30 H 0.193 0.807 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.240 0.760 38 H 0.184 0.816 39 H 0.132 0.868 40 H 0.124 0.876 41 H 0.114 0.886 42 H 0.149 0.851 43 H 0.089 0.911 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 29.921 -6.778 6.638 31.389 hybrid contribution 1.070 1.179 0.236 1.609 sum 30.991 -5.600 6.874 32.235 Atomic orbital electron populations 1.69702 1.05083 1.25750 1.57686 1.24676 0.95230 0.97175 1.02190 0.86547 0.79183 0.85076 0.77698 1.21169 1.21846 1.20364 1.19082 0.80524 0.94720 1.42710 0.89111 1.42769 1.04012 1.01938 1.90327 1.20073 0.89353 0.89298 0.93440 0.92368 1.22258 1.00255 0.95300 0.99951 1.21479 0.94909 0.98711 1.00187 1.21908 0.98262 1.01121 0.95125 1.21109 0.81438 0.98699 0.94294 0.88823 1.46037 1.19494 1.12035 1.58170 1.16756 0.82073 0.84830 0.77893 1.90831 1.66374 1.24058 1.58055 1.22034 0.96385 0.91093 1.01413 1.20086 0.90027 1.02186 1.11906 1.20767 0.89089 0.86699 0.96930 1.50660 1.14711 1.08815 1.46829 1.77668 0.89794 1.20896 1.16480 1.23262 0.81505 0.98431 0.99156 1.24477 1.00828 0.79786 0.98380 1.87154 1.29647 1.30269 1.71466 1.22139 0.97442 0.95509 1.02165 0.93110 0.80732 0.92755 0.91351 0.92273 0.91850 0.91985 0.91850 0.75950 0.81577 0.86824 0.87575 0.88641 0.85087 0.91096 0.91725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.37 13.97 55.49 0.78 -28.60 16 2 C 0.00 0.08 5.50 -17.43 -0.10 -0.01 16 3 Si 0.88 22.07 27.74 -169.99 -4.71 17.35 16 4 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 6 H -0.28 -6.48 6.52 56.52 0.37 -6.11 16 7 C -0.24 -6.72 10.41 -15.06 -0.16 -6.88 16 8 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 9 N -0.75 -17.39 4.93 -53.43 -0.26 -17.65 16 10 C 0.19 3.52 2.77 -67.93 -0.19 3.33 16 11 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 12 C -0.14 -2.33 5.50 -26.73 -0.15 -2.48 16 13 C -0.11 -1.59 5.92 -26.73 -0.16 -1.75 16 14 C -0.13 -1.66 5.49 -26.73 -0.15 -1.80 16 15 C 0.15 2.05 2.45 -67.94 -0.17 1.88 16 16 H 0.09 1.42 7.58 -51.93 -0.39 1.03 16 17 N -0.71 -8.93 5.07 -54.79 -0.28 -9.21 16 18 C 0.60 8.40 7.79 -12.38 -0.10 8.30 16 19 O -0.52 -8.62 16.56 5.30 0.09 -8.54 16 20 C 0.06 0.73 7.09 -82.97 -0.59 0.15 16 21 C -0.21 -2.48 10.60 -39.30 -0.42 -2.90 16 22 C 0.23 2.36 8.32 -16.54 -0.14 2.22 16 23 N -0.41 -3.93 5.01 -59.64 -0.30 -4.23 16 24 N -0.22 -2.60 12.39 33.32 0.41 -2.18 16 25 C 0.10 0.38 8.10 -2.67 -0.02 0.36 16 26 C 0.04 0.11 8.08 38.02 0.31 0.42 16 27 O -0.28 -2.16 11.19 -20.14 -0.23 -2.39 16 28 C -0.13 -2.03 4.86 -26.73 -0.13 -2.16 16 29 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 30 H 0.36 8.22 5.66 -40.82 -0.23 7.99 16 31 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.41 4.53 8.30 -40.82 -0.34 4.19 16 38 H 0.17 1.79 8.06 -52.48 -0.42 1.37 16 39 H 0.11 0.24 8.14 -51.93 -0.42 -0.18 16 40 H 0.11 0.25 8.14 -51.93 -0.42 -0.18 16 41 H 0.10 0.14 8.14 -51.93 -0.42 -0.28 16 42 H 0.13 -0.07 8.14 -51.93 -0.42 -0.50 16 43 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 44 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 362.22 15.07 5.46 5.46 Total: -1.00 -35.43 362.22 -7.66 -43.08 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -6.47 Total: 8.22 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -2.14 Total: -1.32 kcal Atomic # 7 Polarization: -62.22 SS G_CDS: 0.35 Total: -61.87 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: -0.14 Total: -10.93 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.71 Total: 17.35 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.43 -7.66 -43.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981139309.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.289 kcal (2) G-P(sol) polarization free energy of solvation -35.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds