Wall clock time and date at job start Tue Mar 31 2020 12:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86803 * 120.00192 * 2 1 4 4 H 1.48500 * 109.47037 * 269.99632 * 3 2 1 5 5 H 1.48502 * 109.46919 * 29.99512 * 3 2 1 6 6 H 1.48497 * 109.46992 * 149.99502 * 3 2 1 7 7 C 1.38810 * 119.99828 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00440 * 0.02562 * 7 2 1 9 9 N 1.36939 * 119.99923 * 180.02562 * 7 2 1 10 10 C 1.46500 * 120.00030 * 180.02562 * 9 7 2 11 11 H 1.08998 * 109.47186 * 325.00153 * 10 9 7 12 12 C 1.52998 * 109.47295 * 84.99940 * 10 9 7 13 13 C 1.52998 * 109.47298 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.47323 * 299.99926 * 13 12 10 15 15 C 1.52998 * 109.46873 * 59.99813 * 14 13 12 16 16 H 1.09003 * 109.47250 * 60.00152 * 15 14 13 17 17 N 1.46495 * 109.47151 * 180.02562 * 15 14 13 18 18 C 1.34788 * 119.99972 * 275.00112 * 17 15 14 19 19 O 1.21570 * 119.99499 * 359.97438 * 18 17 15 20 20 C 1.47715 * 119.99751 * 180.02562 * 18 17 15 21 21 C 1.40950 * 125.97276 * 179.75123 * 20 18 17 22 22 C 1.36169 * 107.95051 * 179.53727 * 21 20 18 23 23 N 1.35804 * 107.30765 * 0.98784 * 22 21 20 24 24 N 1.31840 * 125.97968 * 359.97438 * 20 18 17 25 25 C 1.47425 * 108.06740 * 178.86697 * 23 22 21 26 26 C 1.54648 * 102.35239 * 344.68137 * 25 23 22 27 27 O 1.36125 * 140.88171 * 180.66897 * 22 21 20 28 28 C 1.52998 * 109.47298 * 300.00202 * 15 14 13 29 29 H 0.96999 * 119.99921 * 0.02562 * 1 2 3 30 30 H 0.96998 * 120.00275 * 0.02562 * 9 7 2 31 31 H 1.09003 * 109.47250 * 60.00127 * 12 10 9 32 32 H 1.09001 * 109.47227 * 300.00444 * 12 10 9 33 33 H 1.09000 * 109.47097 * 180.02562 * 13 12 10 34 34 H 1.08998 * 109.47247 * 60.00174 * 13 12 10 35 35 H 1.08998 * 109.47161 * 300.00301 * 14 13 12 36 36 H 1.08998 * 109.47050 * 180.02562 * 14 13 12 37 37 H 0.97000 * 120.00061 * 95.00069 * 17 15 14 38 38 H 1.08007 * 126.02762 * 359.60255 * 21 20 18 39 39 H 1.08993 * 110.83651 * 226.46405 * 25 23 22 40 40 H 1.09003 * 110.99998 * 102.97129 * 25 23 22 41 41 H 1.08999 * 110.85011 * 266.66434 * 26 25 23 42 42 H 1.09001 * 110.85654 * 143.03031 * 26 25 23 43 43 H 1.09000 * 109.47097 * 179.97438 * 28 15 14 44 44 H 1.08998 * 109.47247 * 299.99826 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4709 0.0011 11 1 3.5645 -3.2066 0.5901 12 6 4.2588 -2.9752 -1.4360 13 6 5.0232 -4.3005 -1.4359 14 6 6.4102 -4.0893 -0.8255 15 6 6.2635 -3.5850 0.6115 16 1 5.7155 -4.3205 1.2005 17 7 7.5915 -3.3822 1.1958 18 6 8.2436 -4.4168 1.7624 19 8 7.7295 -5.5181 1.7890 20 6 9.5824 -4.2121 2.3521 21 6 10.3712 -5.1986 2.9778 22 6 11.5350 -4.6148 3.3765 23 7 11.4674 -3.3028 3.0325 24 7 10.2468 -3.0740 2.3888 25 6 12.7095 -2.6478 3.4815 26 6 13.2941 -3.6871 4.4663 27 8 12.7092 -4.9154 3.9961 28 6 5.4991 -2.2597 0.6115 29 1 -0.4850 0.8400 -0.0004 30 1 3.8646 -0.3622 0.0014 31 1 4.8064 -2.2395 -2.0251 32 1 3.2707 -3.1260 -1.8707 33 1 5.1281 -4.6595 -2.4597 34 1 4.4752 -5.0360 -0.8470 35 1 6.9582 -3.3538 -1.4144 36 1 6.9549 -5.0334 -0.8259 37 1 8.0015 -2.5034 1.1749 38 1 10.1007 -6.2351 3.1157 39 1 12.4906 -1.7103 3.9924 40 1 13.3882 -2.4821 2.6449 41 1 12.9794 -3.4735 5.4878 42 1 14.3811 -3.7222 4.3933 43 1 5.3942 -1.9007 1.6353 44 1 6.0471 -1.5242 0.0225 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981139309.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:15 Heat of formation + Delta-G solvation = 11.292836 kcal Electronic energy + Delta-G solvation = -26377.643586 eV Core-core repulsion = 22524.935827 eV Total energy + Delta-G solvation = -3852.707759 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.38661 -41.18411 -39.75906 -39.00851 -36.37346 -34.90796 -34.29073 -33.25510 -31.49733 -30.55570 -30.00748 -29.52533 -25.79336 -25.31801 -23.91040 -23.23910 -22.58399 -22.20085 -21.34639 -20.84618 -19.59879 -18.82902 -18.10902 -17.61080 -17.34982 -16.60752 -16.48187 -16.32403 -16.27126 -15.78451 -15.39457 -15.21293 -15.02743 -14.92142 -14.83245 -14.48306 -14.31122 -13.97560 -13.74118 -13.49733 -13.14550 -13.01183 -12.88267 -12.38648 -12.27723 -12.23051 -12.11187 -11.97812 -11.80377 -11.70216 -11.66955 -11.43017 -11.12881 -10.89732 -10.37362 -10.09329 -9.70186 -9.29070 -7.99467 -5.32998 0.09968 0.77074 0.92423 1.39229 1.43434 1.50572 1.65098 2.17690 2.20491 2.51045 3.00221 3.31608 3.35853 3.45432 3.76996 3.83448 3.84849 4.01284 4.04981 4.18885 4.23677 4.28869 4.38081 4.44203 4.46263 4.51748 4.57279 4.62330 4.65345 4.74687 4.76590 4.97627 5.10462 5.14650 5.18568 5.22020 5.36541 5.38903 5.51334 5.62912 5.75139 5.80983 6.19934 6.24534 6.48316 7.01725 7.10827 7.86438 8.06720 9.22202 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.019743 B = 0.002493 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.887334 B =11228.813371 C =12197.469911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.069 4.069 3 Si 0.958 3.042 4 H -0.279 1.279 5 H -0.299 1.299 6 H -0.248 1.248 7 C -0.226 4.226 8 H 0.054 0.946 9 N -0.750 5.750 10 C 0.181 3.819 11 H 0.038 0.962 12 C -0.129 4.129 13 C -0.106 4.106 14 C -0.117 4.117 15 C 0.156 3.844 16 H 0.077 0.923 17 N -0.696 5.696 18 C 0.604 3.396 19 O -0.554 6.554 20 C 0.042 3.958 21 C -0.239 4.239 22 C 0.239 3.761 23 N -0.409 5.409 24 N -0.230 5.230 25 C 0.086 3.914 26 C 0.040 3.960 27 O -0.290 6.290 28 C -0.120 4.120 29 H 0.257 0.743 30 H 0.366 0.634 31 H 0.063 0.937 32 H 0.039 0.961 33 H 0.078 0.922 34 H 0.057 0.943 35 H 0.078 0.922 36 H 0.064 0.936 37 H 0.415 0.585 38 H 0.163 0.837 39 H 0.135 0.865 40 H 0.127 0.873 41 H 0.110 0.890 42 H 0.170 0.830 43 H 0.068 0.932 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.773 -5.686 7.189 35.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.637 5.637 2 C -0.260 4.260 3 Si 0.785 3.215 4 H -0.205 1.205 5 H -0.226 1.226 6 H -0.173 1.173 7 C -0.357 4.357 8 H 0.072 0.928 9 N -0.393 5.393 10 C 0.072 3.928 11 H 0.057 0.943 12 C -0.169 4.169 13 C -0.145 4.145 14 C -0.156 4.156 15 C 0.051 3.949 16 H 0.095 0.905 17 N -0.347 5.347 18 C 0.388 3.612 19 O -0.430 6.430 20 C -0.123 4.123 21 C -0.269 4.269 22 C 0.070 3.930 23 N -0.208 5.208 24 N -0.062 5.062 25 C -0.032 4.032 26 C -0.035 4.035 27 O -0.197 6.197 28 C -0.159 4.159 29 H 0.065 0.935 30 H 0.200 0.800 31 H 0.082 0.918 32 H 0.058 0.942 33 H 0.096 0.904 34 H 0.076 0.924 35 H 0.096 0.904 36 H 0.082 0.918 37 H 0.252 0.748 38 H 0.181 0.819 39 H 0.153 0.847 40 H 0.145 0.855 41 H 0.128 0.872 42 H 0.187 0.813 43 H 0.086 0.914 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 34.362 -5.391 6.961 35.472 hybrid contribution -0.169 0.670 0.214 0.723 sum 34.193 -4.721 7.175 35.255 Atomic orbital electron populations 1.69898 1.07223 1.26582 1.60013 1.25539 0.96142 1.01387 1.02914 0.85368 0.78706 0.79405 0.78043 1.20479 1.22605 1.17257 1.19006 0.82653 0.93294 1.40742 0.92803 1.42740 1.02370 1.03862 1.90337 1.20272 0.90747 0.87070 0.94673 0.94340 1.22091 0.99384 0.97194 0.98210 1.21406 0.94922 0.96723 1.01441 1.21837 0.97624 1.01618 0.94517 1.20899 0.81788 0.97428 0.94738 0.90532 1.45855 1.18792 1.12348 1.57661 1.16926 0.82522 0.84393 0.77404 1.90807 1.67392 1.25340 1.59427 1.21745 0.96080 0.91879 1.02633 1.20160 0.91227 1.02327 1.13171 1.20739 0.89215 0.86797 0.96243 1.51082 1.14909 1.09359 1.45417 1.77539 0.90975 1.20521 1.17117 1.23826 0.79583 0.99412 1.00402 1.24952 1.02693 0.77252 0.98589 1.87163 1.28475 1.32885 1.71170 1.21940 0.95311 0.96684 1.01941 0.93469 0.80038 0.91816 0.94190 0.90373 0.92395 0.90385 0.91763 0.74789 0.81900 0.84670 0.85532 0.87203 0.81261 0.91372 0.89744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.96 13.97 21.65 0.30 -63.66 16 2 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 3 Si 0.96 45.42 27.74 68.60 1.90 47.32 16 4 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 5 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 6 H -0.25 -10.45 6.52 99.48 0.65 -9.80 16 7 C -0.23 -12.92 10.41 84.03 0.87 -12.05 16 8 H 0.05 3.41 8.06 -2.91 -0.02 3.39 16 9 N -0.75 -34.50 4.93 -322.94 -1.59 -36.09 16 10 C 0.18 6.71 2.77 44.99 0.12 6.84 16 11 H 0.04 1.58 8.08 -2.39 -0.02 1.56 16 12 C -0.13 -4.29 5.50 30.59 0.17 -4.13 16 13 C -0.11 -2.84 5.92 30.59 0.18 -2.66 16 14 C -0.12 -2.88 5.49 30.59 0.17 -2.71 16 15 C 0.16 4.13 2.45 44.99 0.11 4.24 16 16 H 0.08 2.33 7.58 -2.39 -0.02 2.31 16 17 N -0.70 -16.73 5.07 -445.53 -2.26 -18.99 16 18 C 0.60 16.71 7.79 86.75 0.68 17.39 16 19 O -0.55 -18.68 16.56 -3.94 -0.07 -18.75 16 20 C 0.04 1.05 7.09 42.31 0.30 1.35 16 21 C -0.24 -5.58 10.60 22.45 0.24 -5.34 16 22 C 0.24 4.51 8.32 83.60 0.70 5.20 16 23 N -0.41 -6.87 5.01 -453.35 -2.27 -9.14 16 24 N -0.23 -5.14 12.39 -48.51 -0.60 -5.74 16 25 C 0.09 0.37 8.10 86.76 0.70 1.07 16 26 C 0.04 0.07 8.08 72.54 0.59 0.65 16 27 O -0.29 -3.82 11.19 -94.97 -1.06 -4.88 16 28 C -0.12 -3.44 4.86 30.59 0.15 -3.29 16 29 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 30 H 0.37 15.92 5.66 -92.71 -0.52 15.39 16 31 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.42 8.44 8.30 -92.71 -0.77 7.67 16 38 H 0.16 3.68 8.06 -2.91 -0.02 3.66 16 39 H 0.14 0.02 8.14 -2.39 -0.02 0.00 16 40 H 0.13 0.07 8.14 -2.39 -0.02 0.05 16 41 H 0.11 -0.10 8.14 -2.39 -0.02 -0.11 16 42 H 0.17 -1.02 8.14 -2.39 -0.02 -1.04 16 43 H 0.07 2.01 8.14 -2.39 -0.02 2.00 16 44 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -79.91 362.22 -0.52 -80.44 By element: Atomic # 1 Polarization: 26.86 SS G_CDS: -0.32 Total: 26.54 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: 5.44 Total: 2.95 kcal Atomic # 7 Polarization: -127.20 SS G_CDS: -6.42 Total: -133.62 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: -1.13 Total: -23.63 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 1.90 Total: 47.32 kcal Total: -79.91 -0.52 -80.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981139309.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.728 kcal (2) G-P(sol) polarization free energy of solvation -79.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds