Wall clock time and date at job start Tue Mar 31 2020 13:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.32215 * 120.51031 * 2 1 4 4 C 1.31903 * 121.14373 * 179.97438 * 3 2 1 5 5 N 1.31752 * 122.19172 * 359.97438 * 4 3 2 6 6 C 1.32743 * 120.87442 * 0.02562 * 5 4 3 7 7 O 1.35285 * 120.61354 * 179.97438 * 6 5 4 8 8 C 1.39760 * 120.50660 * 180.25776 * 2 1 3 9 9 C 1.47545 * 120.98289 * 359.97438 * 8 2 1 10 10 O 1.21579 * 119.99918 * 270.24519 * 9 8 2 11 11 N 1.34782 * 119.99803 * 90.24865 * 9 8 2 12 12 C 1.46493 * 119.99795 * 180.02562 * 11 9 8 13 13 H 1.08998 * 109.47282 * 34.99499 * 12 11 9 14 14 C 1.53002 * 109.46851 * 274.99563 * 12 11 9 15 15 C 1.52995 * 109.47567 * 299.99972 * 14 12 11 16 16 C 1.52998 * 109.47122 * 300.00464 * 15 14 12 17 17 C 1.53001 * 109.47444 * 59.99892 * 16 15 14 18 18 H 1.08997 * 109.47141 * 59.99811 * 17 16 15 19 19 N 1.46500 * 109.47232 * 180.02562 * 17 16 15 20 20 C 1.36934 * 119.99651 * 274.99608 * 19 17 16 21 21 H 1.07996 * 120.00253 * 0.02562 * 20 19 17 22 22 C 1.38812 * 119.99814 * 180.02562 * 20 19 17 23 23 N 1.31625 * 119.99949 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00077 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47593 * 59.99545 * 24 22 20 26 26 H 1.48508 * 109.47343 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.46881 * 299.99572 * 24 22 20 28 28 C 1.52995 * 109.47119 * 154.99985 * 12 11 9 29 29 H 1.09001 * 109.46666 * 89.99895 * 1 2 3 30 30 H 1.08997 * 109.46923 * 209.99845 * 1 2 3 31 31 H 1.09003 * 109.46755 * 330.00269 * 1 2 3 32 32 H 1.08000 * 118.90320 * 179.97438 * 4 3 2 33 33 H 0.96705 * 113.99641 * 90.00080 * 7 6 5 34 34 H 0.96997 * 119.99573 * 359.97438 * 11 9 8 35 35 H 1.09008 * 109.47248 * 60.00502 * 14 12 11 36 36 H 1.09001 * 109.47249 * 180.02562 * 14 12 11 37 37 H 1.08998 * 109.47827 * 179.97438 * 15 14 12 38 38 H 1.09010 * 109.46763 * 60.00100 * 15 14 12 39 39 H 1.09001 * 109.46904 * 299.99241 * 16 15 14 40 40 H 1.09004 * 109.46925 * 179.97438 * 16 15 14 41 41 H 0.96998 * 119.99840 * 94.99678 * 19 17 16 42 42 H 0.97000 * 119.99937 * 180.02562 * 23 22 20 43 43 H 1.08997 * 109.47323 * 179.97438 * 28 12 11 44 44 H 1.08997 * 109.47180 * 299.99947 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1783 1.1391 0.0000 4 6 3.4973 1.1537 0.0005 5 7 4.2115 0.0465 0.0015 6 6 3.6233 -1.1435 0.0016 7 8 4.3618 -2.2770 0.0021 8 6 2.2166 -1.2041 -0.0054 9 6 1.5123 -2.5006 -0.0107 10 8 1.2186 -3.0371 1.0400 11 7 1.1947 -3.0902 -1.1803 12 6 0.4949 -4.3772 -1.1856 13 1 -0.1995 -4.4167 -0.3463 14 6 1.5134 -5.5119 -1.0586 15 6 2.4881 -5.4566 -2.2366 16 6 1.7136 -5.6106 -3.5471 17 6 0.6952 -4.4759 -3.6741 18 1 1.2159 -3.5183 -3.6702 19 7 -0.0468 -4.6238 -4.9286 20 6 0.4673 -4.1162 -6.0919 21 1 1.4198 -3.6074 -6.0847 22 6 -0.2360 -4.2559 -7.2805 23 7 -1.3967 -4.8765 -7.2895 24 14 0.4655 -3.5642 -8.8676 25 1 1.7763 -4.2027 -9.1492 26 1 -0.4715 -3.8423 -9.9857 27 1 0.6490 -2.0970 -8.7297 28 6 -0.2795 -4.5313 -2.4960 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 4.0088 2.1049 0.0001 33 1 4.5762 -2.6063 0.8858 34 1 1.4287 -2.6619 -2.0186 35 1 2.0652 -5.4022 -0.1250 36 1 0.9929 -6.4696 -1.0630 37 1 3.2140 -6.2647 -2.1460 38 1 3.0088 -4.4989 -2.2327 39 1 1.1930 -6.5683 -3.5510 40 1 2.4081 -5.5708 -4.3863 41 1 -0.9021 -5.0811 -4.9351 42 1 -1.8879 -4.9744 -8.1201 43 1 -0.7998 -5.4891 -2.5001 44 1 -1.0050 -3.7229 -2.5865 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981286503.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:36 Heat of formation + Delta-G solvation = -26.979660 kcal Electronic energy + Delta-G solvation = -27653.513507 eV Core-core repulsion = 23799.146129 eV Total energy + Delta-G solvation = -3854.367379 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.71596 -39.96224 -38.12942 -37.91974 -34.54650 -34.52838 -33.17003 -32.18352 -31.18183 -29.78468 -28.83469 -27.89887 -25.49367 -23.77332 -23.17821 -22.24185 -21.56805 -21.00126 -19.24465 -18.91018 -18.39397 -18.09117 -17.15929 -16.62161 -15.88162 -15.54435 -15.25305 -14.71720 -14.53860 -14.41173 -14.34647 -13.75821 -13.57274 -13.52924 -13.16547 -13.08044 -12.94460 -12.49762 -12.39320 -12.11363 -11.97219 -11.79320 -11.58958 -11.03469 -10.90160 -10.80918 -10.70012 -10.42708 -10.25054 -10.22622 -10.10567 -9.79361 -9.77805 -9.71927 -9.56565 -9.05745 -8.89668 -7.01164 -5.81182 -3.10312 0.24812 0.54528 2.29515 2.89479 2.99307 3.30897 3.40627 3.45735 3.46164 3.61597 3.88490 4.38651 4.53820 4.59124 4.78952 4.93773 5.00703 5.04896 5.13045 5.23572 5.32539 5.44989 5.53785 5.56688 5.64720 5.70435 5.82592 5.86794 5.92704 6.00957 6.04904 6.18106 6.25302 6.45569 6.46634 6.50367 6.55862 6.67789 6.90721 6.94552 7.04593 7.39404 7.62393 7.64793 8.01428 8.37258 9.48622 10.05381 10.39991 11.41233 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012977 B = 0.003715 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.097115 B = 7535.250931 C = 8329.602268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.229 3.771 3 N -0.526 5.526 4 C 0.335 3.665 5 N -0.543 5.543 6 C 0.400 3.600 7 O -0.467 6.467 8 C -0.251 4.251 9 C 0.580 3.420 10 O -0.535 6.535 11 N -0.700 5.700 12 C 0.150 3.850 13 H 0.087 0.913 14 C -0.126 4.126 15 C -0.116 4.116 16 C -0.137 4.137 17 C 0.181 3.819 18 H 0.040 0.960 19 N -0.724 5.724 20 C -0.241 4.241 21 H 0.069 0.931 22 C -0.011 4.011 23 N -0.932 5.932 24 Si 0.905 3.095 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.286 1.286 28 C -0.134 4.134 29 H 0.098 0.902 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.206 0.794 33 H 0.413 0.587 34 H 0.405 0.595 35 H 0.061 0.939 36 H 0.071 0.929 37 H 0.053 0.947 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.060 0.940 41 H 0.384 0.616 42 H 0.256 0.744 43 H 0.079 0.921 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.902 7.129 18.147 20.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.083 3.917 3 N -0.242 5.242 4 C 0.048 3.952 5 N -0.268 5.268 6 C 0.212 3.788 7 O -0.275 6.275 8 C -0.261 4.261 9 C 0.363 3.637 10 O -0.413 6.413 11 N -0.351 5.351 12 C 0.046 3.954 13 H 0.105 0.895 14 C -0.164 4.164 15 C -0.154 4.154 16 C -0.177 4.177 17 C 0.070 3.930 18 H 0.057 0.943 19 N -0.364 5.364 20 C -0.372 4.372 21 H 0.087 0.913 22 C -0.207 4.207 23 N -0.580 5.580 24 Si 0.736 3.264 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.213 1.213 28 C -0.172 4.172 29 H 0.116 0.884 30 H 0.104 0.896 31 H 0.111 0.889 32 H 0.223 0.777 33 H 0.274 0.726 34 H 0.242 0.758 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.218 0.782 42 H 0.066 0.934 43 H 0.097 0.903 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 7.197 7.627 18.126 20.941 hybrid contribution 0.156 -0.485 -0.999 1.121 sum 7.353 7.143 17.127 19.961 Atomic orbital electron populations 1.20969 0.86797 1.04921 1.04792 1.21846 0.97848 0.85959 0.86012 1.68310 1.10186 1.29388 1.16296 1.24989 0.86269 0.96137 0.87786 1.68061 1.42625 0.98688 1.17381 1.19381 0.85491 0.85997 0.87943 1.84658 1.72499 1.35871 1.34495 1.21815 0.95088 0.97074 1.12075 1.17508 0.78464 0.83203 0.84530 1.90809 1.54274 1.64794 1.31382 1.46215 1.58164 1.22575 1.08125 1.21059 0.93551 0.81697 0.99093 0.89516 1.21886 0.97721 0.98141 0.98697 1.21507 0.97577 1.01258 0.95071 1.22287 0.99061 1.00755 0.95635 1.20142 0.91337 0.95461 0.86028 0.94252 1.42401 1.23187 1.68483 1.02375 1.19165 1.02626 1.29408 0.86006 0.91349 1.24723 0.96984 1.01229 0.97776 1.69647 1.14442 1.47390 1.26549 0.86306 0.77960 0.78690 0.83451 1.21266 1.21652 1.21299 1.22141 0.98659 1.03199 0.93248 0.88398 0.89560 0.88923 0.77728 0.72562 0.75835 0.92058 0.91017 0.92801 0.92431 0.92516 0.92083 0.78219 0.93431 0.90279 0.91128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.06 9.85 36.01 0.35 -0.71 16 2 C 0.23 2.54 6.86 -81.85 -0.56 1.98 16 3 N -0.53 -5.67 10.36 -10.52 -0.11 -5.78 16 4 C 0.34 3.24 12.27 -92.10 -1.13 2.11 16 5 N -0.54 -6.16 10.45 -14.32 -0.15 -6.31 16 6 C 0.40 4.69 7.85 -16.19 -0.13 4.56 16 7 O -0.47 -4.93 13.10 -17.55 -0.23 -5.16 16 8 C -0.25 -3.00 5.67 -104.56 -0.59 -3.59 16 9 C 0.58 7.49 5.48 -12.46 -0.07 7.42 16 10 O -0.54 -8.17 16.77 5.30 0.09 -8.08 16 11 N -0.70 -8.81 4.23 -54.85 -0.23 -9.04 16 12 C 0.15 1.95 2.78 -67.94 -0.19 1.76 16 13 H 0.09 1.12 7.58 -51.93 -0.39 0.73 16 14 C -0.13 -1.60 5.60 -26.73 -0.15 -1.75 16 15 C -0.12 -1.60 5.77 -26.73 -0.15 -1.76 16 16 C -0.14 -2.33 5.50 -26.73 -0.15 -2.47 16 17 C 0.18 3.28 2.60 -67.93 -0.18 3.10 16 18 H 0.04 0.73 6.44 -51.93 -0.33 0.39 16 19 N -0.72 -17.19 5.12 -53.42 -0.27 -17.46 16 20 C -0.24 -6.46 9.93 -15.06 -0.15 -6.61 16 21 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 22 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 23 N -0.93 -27.49 13.06 55.49 0.72 -26.77 16 24 Si 0.90 22.03 29.55 -169.99 -5.02 17.01 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 27 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 28 C -0.13 -1.99 5.07 -26.73 -0.14 -2.12 16 29 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.09 0.82 7.18 -51.93 -0.37 0.45 16 31 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.21 1.17 8.06 -52.49 -0.42 0.74 16 33 H 0.41 2.52 9.06 45.56 0.41 2.93 16 34 H 0.41 5.21 6.85 -40.82 -0.28 4.93 16 35 H 0.06 0.79 8.14 -51.92 -0.42 0.36 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.82 7.60 -51.92 -0.39 0.42 16 39 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.38 9.74 7.80 -40.82 -0.32 9.42 16 42 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 43 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 364.69 15.07 5.50 5.50 Total: -1.00 -32.90 364.69 -8.49 -41.39 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: -5.45 Total: 13.20 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: -3.32 Total: 1.51 kcal Atomic # 7 Polarization: -65.32 SS G_CDS: -0.04 Total: -65.36 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: -0.14 Total: -13.24 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.90 -8.49 -41.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981286503.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.407 kcal (2) G-P(sol) polarization free energy of solvation -32.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds