Wall clock time and date at job start Tue Mar 31 2020 13:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.32215 * 120.51031 * 2 1 4 4 C 1.31903 * 121.14373 * 179.97438 * 3 2 1 5 5 N 1.31752 * 122.19172 * 359.97438 * 4 3 2 6 6 C 1.32743 * 120.87442 * 0.02562 * 5 4 3 7 7 O 1.35285 * 120.61354 * 179.97438 * 6 5 4 8 8 C 1.39760 * 120.50660 * 180.25776 * 2 1 3 9 9 C 1.47545 * 120.98289 * 359.97438 * 8 2 1 10 10 O 1.21579 * 119.99918 * 270.24519 * 9 8 2 11 11 N 1.34782 * 119.99803 * 90.24865 * 9 8 2 12 12 C 1.46493 * 119.99795 * 180.02562 * 11 9 8 13 13 H 1.08998 * 109.47282 * 34.99499 * 12 11 9 14 14 C 1.53002 * 109.46851 * 274.99563 * 12 11 9 15 15 C 1.52995 * 109.47567 * 299.99972 * 14 12 11 16 16 C 1.52998 * 109.47122 * 300.00464 * 15 14 12 17 17 C 1.53001 * 109.47444 * 59.99892 * 16 15 14 18 18 H 1.08997 * 109.47141 * 59.99811 * 17 16 15 19 19 N 1.46500 * 109.47232 * 180.02562 * 17 16 15 20 20 C 1.36934 * 119.99651 * 274.99608 * 19 17 16 21 21 H 1.07996 * 120.00253 * 0.02562 * 20 19 17 22 22 C 1.38812 * 119.99814 * 180.02562 * 20 19 17 23 23 N 1.31625 * 119.99949 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00077 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47593 * 59.99545 * 24 22 20 26 26 H 1.48508 * 109.47343 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.46881 * 299.99572 * 24 22 20 28 28 C 1.52995 * 109.47119 * 154.99985 * 12 11 9 29 29 H 1.09001 * 109.46666 * 89.99895 * 1 2 3 30 30 H 1.08997 * 109.46923 * 209.99845 * 1 2 3 31 31 H 1.09003 * 109.46755 * 330.00269 * 1 2 3 32 32 H 1.08000 * 118.90320 * 179.97438 * 4 3 2 33 33 H 0.96705 * 113.99641 * 90.00080 * 7 6 5 34 34 H 0.96997 * 119.99573 * 359.97438 * 11 9 8 35 35 H 1.09008 * 109.47248 * 60.00502 * 14 12 11 36 36 H 1.09001 * 109.47249 * 180.02562 * 14 12 11 37 37 H 1.08998 * 109.47827 * 179.97438 * 15 14 12 38 38 H 1.09010 * 109.46763 * 60.00100 * 15 14 12 39 39 H 1.09001 * 109.46904 * 299.99241 * 16 15 14 40 40 H 1.09004 * 109.46925 * 179.97438 * 16 15 14 41 41 H 0.96998 * 119.99840 * 94.99678 * 19 17 16 42 42 H 0.97000 * 119.99937 * 180.02562 * 23 22 20 43 43 H 1.08997 * 109.47323 * 179.97438 * 28 12 11 44 44 H 1.08997 * 109.47180 * 299.99947 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1783 1.1391 0.0000 4 6 3.4973 1.1537 0.0005 5 7 4.2115 0.0465 0.0015 6 6 3.6233 -1.1435 0.0016 7 8 4.3618 -2.2770 0.0021 8 6 2.2166 -1.2041 -0.0054 9 6 1.5123 -2.5006 -0.0107 10 8 1.2186 -3.0371 1.0400 11 7 1.1947 -3.0902 -1.1803 12 6 0.4949 -4.3772 -1.1856 13 1 -0.1995 -4.4167 -0.3463 14 6 1.5134 -5.5119 -1.0586 15 6 2.4881 -5.4566 -2.2366 16 6 1.7136 -5.6106 -3.5471 17 6 0.6952 -4.4759 -3.6741 18 1 1.2159 -3.5183 -3.6702 19 7 -0.0468 -4.6238 -4.9286 20 6 0.4673 -4.1162 -6.0919 21 1 1.4198 -3.6074 -6.0847 22 6 -0.2360 -4.2559 -7.2805 23 7 -1.3967 -4.8765 -7.2895 24 14 0.4655 -3.5642 -8.8676 25 1 1.7763 -4.2027 -9.1492 26 1 -0.4715 -3.8423 -9.9857 27 1 0.6490 -2.0970 -8.7297 28 6 -0.2795 -4.5313 -2.4960 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 4.0088 2.1049 0.0001 33 1 4.5762 -2.6063 0.8858 34 1 1.4287 -2.6619 -2.0186 35 1 2.0652 -5.4022 -0.1250 36 1 0.9929 -6.4696 -1.0630 37 1 3.2140 -6.2647 -2.1460 38 1 3.0088 -4.4989 -2.2327 39 1 1.1930 -6.5683 -3.5510 40 1 2.4081 -5.5708 -4.3863 41 1 -0.9021 -5.0811 -4.9351 42 1 -1.8879 -4.9744 -8.1201 43 1 -0.7998 -5.4891 -2.5001 44 1 -1.0050 -3.7229 -2.5865 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981286503.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:10:35 Heat of formation + Delta-G solvation = -52.302147 kcal Electronic energy + Delta-G solvation = -27654.611573 eV Core-core repulsion = 23799.146129 eV Total energy + Delta-G solvation = -3855.465444 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.55887 -41.04159 -39.22375 -38.84935 -36.16545 -35.35167 -34.48418 -33.18105 -32.81486 -30.93077 -29.76009 -29.41335 -26.35224 -25.67226 -23.98660 -23.43625 -22.73330 -22.29943 -20.17999 -20.02743 -19.35961 -19.18882 -18.84782 -17.43766 -17.03565 -16.83310 -16.32291 -16.10565 -15.70610 -15.58902 -15.31612 -15.09930 -14.97097 -14.73374 -14.43385 -13.92818 -13.86484 -13.72018 -13.51898 -13.16395 -13.13581 -13.04039 -12.89490 -12.78364 -12.45340 -12.26835 -12.08116 -11.95061 -11.60643 -11.50223 -11.47057 -11.10182 -11.01241 -10.84382 -10.65617 -10.54513 -10.11010 -8.98596 -7.93276 -5.20830 -0.56219 -0.27573 1.29686 1.47244 1.48649 1.54778 2.01315 2.13682 2.48334 2.56139 2.88798 3.11663 3.39823 3.43747 3.69241 3.76946 3.87642 3.93410 4.07210 4.20467 4.30295 4.30602 4.36185 4.54229 4.55944 4.60680 4.66112 4.71921 4.81583 4.88287 4.93012 5.09856 5.15432 5.17833 5.24350 5.36006 5.43131 5.50824 5.54785 5.64328 5.65352 6.29021 6.29574 6.35476 6.83445 6.98755 7.35870 8.12517 8.34991 9.29808 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012977 B = 0.003715 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.097115 B = 7535.250931 C = 8329.602268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.226 3.774 3 N -0.535 5.535 4 C 0.338 3.662 5 N -0.557 5.557 6 C 0.398 3.602 7 O -0.476 6.476 8 C -0.269 4.269 9 C 0.590 3.410 10 O -0.559 6.559 11 N -0.697 5.697 12 C 0.158 3.842 13 H 0.094 0.906 14 C -0.120 4.120 15 C -0.104 4.104 16 C -0.128 4.128 17 C 0.177 3.823 18 H 0.038 0.962 19 N -0.736 5.736 20 C -0.237 4.237 21 H 0.072 0.928 22 C -0.071 4.071 23 N -0.967 5.967 24 Si 0.965 3.035 25 H -0.281 1.281 26 H -0.296 1.296 27 H -0.279 1.279 28 C -0.121 4.121 29 H 0.103 0.897 30 H 0.080 0.920 31 H 0.106 0.894 32 H 0.242 0.758 33 H 0.430 0.570 34 H 0.404 0.596 35 H 0.066 0.934 36 H 0.082 0.918 37 H 0.067 0.933 38 H 0.055 0.945 39 H 0.051 0.949 40 H 0.036 0.964 41 H 0.373 0.627 42 H 0.250 0.750 43 H 0.082 0.918 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.944 7.998 19.219 22.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.080 3.920 3 N -0.251 5.251 4 C 0.052 3.948 5 N -0.283 5.283 6 C 0.210 3.790 7 O -0.287 6.287 8 C -0.278 4.278 9 C 0.374 3.626 10 O -0.438 6.438 11 N -0.347 5.347 12 C 0.054 3.946 13 H 0.112 0.888 14 C -0.159 4.159 15 C -0.142 4.142 16 C -0.169 4.169 17 C 0.068 3.932 18 H 0.056 0.944 19 N -0.375 5.375 20 C -0.369 4.369 21 H 0.089 0.911 22 C -0.264 4.264 23 N -0.618 5.618 24 Si 0.794 3.206 25 H -0.208 1.208 26 H -0.223 1.223 27 H -0.205 1.205 28 C -0.160 4.160 29 H 0.121 0.879 30 H 0.099 0.901 31 H 0.125 0.875 32 H 0.258 0.742 33 H 0.294 0.706 34 H 0.241 0.759 35 H 0.085 0.915 36 H 0.101 0.899 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.055 0.945 41 H 0.205 0.795 42 H 0.059 0.941 43 H 0.101 0.899 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 8.287 8.505 19.243 22.612 hybrid contribution -0.102 -0.726 -1.258 1.456 sum 8.184 7.779 17.986 21.236 Atomic orbital electron populations 1.21007 0.85715 1.05323 1.05208 1.22155 0.98709 0.85878 0.85260 1.68406 1.10736 1.29070 1.16910 1.25774 0.86121 0.97028 0.85886 1.68162 1.42903 0.98928 1.18267 1.19516 0.85561 0.86462 0.87488 1.84608 1.72337 1.35671 1.36125 1.21743 0.95283 0.96754 1.13988 1.17539 0.77823 0.83260 0.83955 1.90794 1.55335 1.65566 1.32104 1.46176 1.57981 1.22429 1.08128 1.20966 0.93658 0.82096 0.97909 0.88813 1.21851 0.97345 0.98490 0.98172 1.21391 0.97612 1.01682 0.93558 1.22118 0.98330 0.99781 0.96633 1.20360 0.91942 0.95758 0.85096 0.94357 1.42597 1.23205 1.68211 1.03525 1.19511 1.02288 1.27960 0.87112 0.91052 1.25439 0.97619 1.02575 1.00750 1.69791 1.15828 1.49458 1.26743 0.85347 0.77143 0.78284 0.79813 1.20761 1.22256 1.20531 1.21980 0.97930 1.03334 0.92730 0.87853 0.90111 0.87538 0.74183 0.70589 0.75928 0.91501 0.89905 0.91455 0.92635 0.93015 0.94538 0.79462 0.94110 0.89928 0.91484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.94 9.85 71.24 0.70 -1.24 16 2 C 0.23 4.71 6.86 42.87 0.29 5.01 16 3 N -0.53 -10.60 10.36 -187.21 -1.94 -12.54 16 4 C 0.34 5.83 12.27 180.86 2.22 8.05 16 5 N -0.56 -11.75 10.45 -312.05 -3.26 -15.01 16 6 C 0.40 8.82 7.85 85.18 0.67 9.49 16 7 O -0.48 -9.41 13.10 -85.70 -1.12 -10.53 16 8 C -0.27 -6.09 5.67 -19.83 -0.11 -6.21 16 9 C 0.59 14.50 5.48 86.70 0.48 14.98 16 10 O -0.56 -16.34 16.77 -3.96 -0.07 -16.41 16 11 N -0.70 -16.63 4.23 -445.72 -1.88 -18.51 16 12 C 0.16 3.82 2.78 44.99 0.13 3.95 16 13 H 0.09 2.24 7.58 -2.39 -0.02 2.22 16 14 C -0.12 -2.78 5.60 30.59 0.17 -2.61 16 15 C -0.10 -2.69 5.77 30.59 0.18 -2.52 16 16 C -0.13 -4.27 5.50 30.59 0.17 -4.10 16 17 C 0.18 6.33 2.60 44.99 0.12 6.45 16 18 H 0.04 1.39 6.44 -2.39 -0.02 1.38 16 19 N -0.74 -35.14 5.12 -322.94 -1.65 -36.79 16 20 C -0.24 -12.72 9.93 84.03 0.83 -11.89 16 21 H 0.07 3.72 7.83 -2.91 -0.02 3.69 16 22 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 23 N -0.97 -57.95 13.06 21.65 0.28 -57.67 16 24 Si 0.96 45.49 29.55 68.60 2.03 47.52 16 25 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 26 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 27 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 28 C -0.12 -3.47 5.07 30.59 0.16 -3.32 16 29 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.08 1.45 7.18 -2.39 -0.02 1.44 16 31 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.24 2.04 8.06 -2.91 -0.02 2.02 16 33 H 0.43 4.67 9.06 -74.05 -0.67 4.00 16 34 H 0.40 9.97 6.85 -92.71 -0.64 9.34 16 35 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 36 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.05 1.48 7.60 -2.38 -0.02 1.46 16 39 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 41 H 0.37 19.23 7.80 -92.71 -0.72 18.50 16 42 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 43 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 44 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -69.72 364.69 -2.13 -71.85 By element: Atomic # 1 Polarization: 36.57 SS G_CDS: -0.97 Total: 35.60 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: 6.46 Total: 12.50 kcal Atomic # 7 Polarization: -132.07 SS G_CDS: -8.46 Total: -140.53 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: -1.19 Total: -26.94 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -69.72 -2.13 -71.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981286503.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.547 kcal (2) G-P(sol) polarization free energy of solvation -69.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds