Wall clock time and date at job start Tue Mar 31 2020 12:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86795 * 119.99668 * 2 1 4 4 H 1.48502 * 109.46808 * 239.99495 * 3 2 1 5 5 H 1.48504 * 109.47363 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47265 * 119.99759 * 3 2 1 7 7 C 1.38815 * 119.99920 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99722 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00264 * 0.02562 * 7 2 1 10 10 C 1.46495 * 119.99884 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.47163 * 34.99784 * 10 9 7 12 12 C 1.53000 * 109.46873 * 274.99873 * 10 9 7 13 13 C 1.52996 * 109.47253 * 299.99840 * 12 10 9 14 14 C 1.53006 * 109.47416 * 300.00429 * 13 12 10 15 15 C 1.52997 * 109.46908 * 59.99581 * 14 13 12 16 16 H 1.08999 * 109.46983 * 60.00346 * 15 14 13 17 17 N 1.46506 * 109.46691 * 180.02562 * 15 14 13 18 18 C 1.34773 * 119.99969 * 274.72265 * 17 15 14 19 19 O 1.21617 * 120.00330 * 0.02562 * 18 17 15 20 20 C 1.47296 * 119.99940 * 180.02562 * 18 17 15 21 21 C 1.37934 * 125.89909 * 180.02562 * 20 18 17 22 22 C 1.39445 * 107.45806 * 179.97438 * 21 20 18 23 23 C 1.37932 * 107.46217 * 359.97438 * 22 21 20 24 24 C 1.47298 * 125.89608 * 179.97438 * 23 22 21 25 25 N 1.34785 * 119.99643 * 180.02562 * 24 23 22 26 26 O 1.21611 * 120.00252 * 0.02562 * 24 23 22 27 27 N 1.36754 * 125.89797 * 359.71499 * 20 18 17 28 28 H 0.96999 * 125.66778 * 0.02562 * 27 20 18 29 29 C 1.52993 * 109.47602 * 300.00088 * 15 14 13 30 30 H 0.96996 * 119.99925 * 0.02562 * 1 2 3 31 31 H 0.97006 * 119.99879 * 0.02562 * 9 7 2 32 32 H 1.09004 * 109.47226 * 180.02562 * 12 10 9 33 33 H 1.08992 * 109.47181 * 60.00265 * 12 10 9 34 34 H 1.09005 * 109.47475 * 180.02562 * 13 12 10 35 35 H 1.08999 * 109.46985 * 60.00395 * 13 12 10 36 36 H 1.09001 * 109.46425 * 299.99480 * 14 13 12 37 37 H 1.08995 * 109.46903 * 179.97438 * 14 13 12 38 38 H 0.97005 * 119.99811 * 95.00317 * 17 15 14 39 39 H 1.07996 * 126.27223 * 359.93586 * 21 20 18 40 40 H 1.08002 * 126.27193 * 180.02562 * 22 21 20 41 41 H 0.96997 * 119.99619 * 359.97438 * 25 24 23 42 42 H 0.96995 * 120.00064 * 179.97438 * 25 24 23 43 43 H 1.08996 * 109.47599 * 180.02562 * 29 15 14 44 44 H 1.09001 * 109.47077 * 300.00924 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 2.9689 -3.5504 0.5899 12 6 2.4221 -4.0355 -1.4365 13 6 1.1438 -4.1847 -2.2638 14 6 0.2666 -5.2801 -1.6542 15 6 -0.0972 -4.9013 -0.2172 16 1 -0.6422 -3.9574 -0.2172 17 7 -0.9367 -5.9505 0.3667 18 6 -2.2696 -5.9356 0.1680 19 8 -2.7755 -5.0515 -0.4964 20 6 -3.1136 -6.9901 0.7556 21 6 -4.4834 -7.0933 0.6302 22 6 -4.8835 -8.2285 1.3342 23 6 -3.7513 -8.7995 1.8770 24 6 -3.7095 -10.0196 2.7011 25 7 -2.5315 -10.4741 3.1728 26 8 -4.7377 -10.6169 2.9558 27 7 -2.6738 -8.0392 1.5146 28 1 -1.7511 -8.2141 1.7573 29 6 1.1810 -4.7521 0.6102 30 1 -0.4850 0.8400 -0.0004 31 1 0.3556 -2.3881 -0.0002 32 1 2.9668 -4.9797 -1.4366 33 1 3.0469 -3.2552 -1.8708 34 1 1.4029 -4.4550 -3.2875 35 1 0.5988 -3.2408 -2.2638 36 1 0.8117 -6.2241 -1.6543 37 1 -0.6443 -5.3861 -2.2434 38 1 -0.5336 -6.6536 0.8998 39 1 -5.1279 -6.4183 0.0869 40 1 -5.8947 -8.5943 1.4353 41 1 -1.7114 -9.9979 2.9693 42 1 -2.5040 -11.2774 3.7158 43 1 0.9218 -4.4827 1.6340 44 1 1.7261 -5.6961 0.6101 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981339445.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:57 Heat of formation + Delta-G solvation = -30.154086 kcal Electronic energy + Delta-G solvation = -26704.981828 eV Core-core repulsion = 22850.476796 eV Total energy + Delta-G solvation = -3854.505032 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.83108 -39.85586 -39.10125 -37.89000 -34.67193 -34.29964 -33.15253 -31.46987 -30.99355 -30.28328 -28.95185 -28.02333 -24.60117 -23.67239 -22.46196 -21.96408 -21.30311 -20.62707 -20.30707 -19.61215 -18.48062 -17.55509 -17.31859 -17.10811 -15.95751 -15.72023 -15.15537 -14.96105 -14.68056 -14.50395 -14.35958 -13.98705 -13.92850 -13.63688 -13.51300 -13.24195 -12.95482 -12.89264 -12.41239 -12.10811 -11.82729 -11.45918 -10.97036 -10.85031 -10.80908 -10.77419 -10.36395 -10.29962 -10.24598 -10.15292 -10.09698 -9.65861 -9.55152 -9.43067 -9.06266 -8.85060 -8.61173 -6.96524 -5.75288 -3.05088 0.71715 1.93561 2.43329 2.93595 2.95211 3.00998 3.24983 3.43610 3.48242 3.49779 4.38460 4.54361 4.58850 4.92924 4.94411 5.05988 5.13701 5.39295 5.56629 5.57684 5.61289 5.64987 5.76660 5.82333 5.83773 6.00569 6.02328 6.09512 6.11826 6.23023 6.26693 6.36527 6.46921 6.54559 6.54982 6.66147 6.73137 6.79181 6.86189 6.96566 7.06306 7.41906 7.67685 7.69620 8.11336 8.42389 9.53427 10.10094 10.44112 11.46677 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020237 B = 0.002634 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.303215 B =10628.766483 C =10981.619882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.011 4.011 3 Si 0.905 3.095 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.287 1.287 7 C -0.242 4.242 8 H 0.069 0.931 9 N -0.721 5.721 10 C 0.180 3.820 11 H 0.051 0.949 12 C -0.136 4.136 13 C -0.110 4.110 14 C -0.120 4.120 15 C 0.145 3.855 16 H 0.103 0.897 17 N -0.723 5.723 18 C 0.579 3.421 19 O -0.507 6.507 20 C 0.001 3.999 21 C -0.125 4.125 22 C -0.113 4.113 23 C -0.032 4.032 24 C 0.595 3.405 25 N -0.855 5.855 26 O -0.525 6.525 27 N -0.523 5.523 28 H 0.415 0.585 29 C -0.128 4.128 30 H 0.256 0.744 31 H 0.385 0.615 32 H 0.042 0.958 33 H 0.062 0.938 34 H 0.049 0.951 35 H 0.079 0.921 36 H 0.053 0.947 37 H 0.060 0.940 38 H 0.387 0.613 39 H 0.159 0.841 40 H 0.157 0.843 41 H 0.396 0.604 42 H 0.409 0.591 43 H 0.068 0.932 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.384 -21.776 3.571 22.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.208 4.208 3 Si 0.736 3.264 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.214 1.214 7 C -0.373 4.373 8 H 0.087 0.913 9 N -0.364 5.364 10 C 0.069 3.931 11 H 0.069 0.931 12 C -0.176 4.176 13 C -0.148 4.148 14 C -0.159 4.159 15 C 0.042 3.958 16 H 0.121 0.879 17 N -0.373 5.373 18 C 0.364 3.636 19 O -0.381 6.381 20 C -0.117 4.117 21 C -0.151 4.151 22 C -0.140 4.140 23 C -0.149 4.149 24 C 0.380 3.620 25 N -0.419 5.419 26 O -0.401 6.401 27 N -0.122 5.122 28 H 0.253 0.747 29 C -0.167 4.167 30 H 0.066 0.934 31 H 0.220 0.780 32 H 0.061 0.939 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.098 0.902 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.220 0.780 39 H 0.177 0.823 40 H 0.174 0.826 41 H 0.224 0.776 42 H 0.241 0.759 43 H 0.086 0.914 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.257 -21.244 3.202 21.603 hybrid contribution 1.376 0.385 0.503 1.515 sum -0.881 -20.859 3.705 21.204 Atomic orbital electron populations 1.69653 1.05029 1.25837 1.57210 1.24742 0.95465 0.97625 1.02936 0.86307 0.78525 0.83799 0.77747 1.21332 1.21738 1.21377 1.19160 0.90900 0.84128 1.43159 0.91286 1.42495 1.05761 0.99582 1.88558 1.20145 0.93935 0.85936 0.93088 0.93072 1.22188 0.96915 0.99476 0.99038 1.21363 0.96686 0.99285 0.97469 1.21850 0.99764 0.98759 0.95510 1.21158 0.91106 0.91057 0.92452 0.87869 1.46098 1.06572 1.30266 1.54367 1.17198 0.81709 0.84038 0.80629 1.90912 1.73065 1.35383 1.38694 1.20873 0.95276 0.92468 1.03070 1.21369 0.92228 0.98988 1.02497 1.21330 0.97850 0.95760 0.99057 1.20440 0.88185 0.97440 1.08803 1.17168 0.83781 0.82610 0.78420 1.43724 1.08832 1.32392 1.56910 1.90888 1.33100 1.57676 1.58390 1.41914 1.08851 1.20968 1.40450 0.74747 1.22090 0.95364 0.99628 0.99588 0.93385 0.78027 0.93930 0.91906 0.93176 0.90211 0.92819 0.92132 0.78016 0.82338 0.82566 0.77588 0.75874 0.91373 0.92137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.91 13.06 55.49 0.72 -27.19 16 2 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 3 Si 0.91 22.16 29.55 -169.99 -5.02 17.13 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 7 C -0.24 -6.49 9.93 -15.06 -0.15 -6.64 16 8 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 9 N -0.72 -17.05 4.28 -53.43 -0.23 -17.28 16 10 C 0.18 3.25 3.10 -67.93 -0.21 3.04 16 11 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 12 C -0.14 -2.24 5.61 -26.73 -0.15 -2.39 16 13 C -0.11 -1.81 5.77 -26.73 -0.15 -1.97 16 14 C -0.12 -1.74 5.50 -26.73 -0.15 -1.89 16 15 C 0.15 2.17 2.29 -67.93 -0.16 2.02 16 16 H 0.10 2.03 5.93 -51.93 -0.31 1.72 16 17 N -0.72 -8.41 5.07 -54.93 -0.28 -8.69 16 18 C 0.58 8.05 7.78 -12.58 -0.10 7.95 16 19 O -0.51 -9.42 16.53 5.26 0.09 -9.34 16 20 C 0.00 0.01 7.04 -82.10 -0.58 -0.57 16 21 C -0.12 -1.41 10.60 -39.24 -0.42 -1.82 16 22 C -0.11 -1.16 10.60 -39.24 -0.42 -1.58 16 23 C -0.03 -0.30 7.04 -82.10 -0.58 -0.87 16 24 C 0.59 5.30 8.08 -12.57 -0.10 5.19 16 25 N -0.85 -3.72 8.87 30.40 0.27 -3.45 16 26 O -0.53 -6.73 17.71 5.27 0.09 -6.64 16 27 N -0.52 -3.91 5.90 -5.89 -0.03 -3.95 16 28 H 0.41 1.56 7.34 -40.82 -0.30 1.27 16 29 C -0.13 -1.82 5.08 -26.73 -0.14 -1.96 16 30 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 31 H 0.38 9.86 6.06 -40.82 -0.25 9.61 16 32 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.08 1.62 7.60 -51.93 -0.39 1.22 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.39 2.94 7.70 -40.82 -0.31 2.63 16 39 H 0.16 1.74 8.06 -52.49 -0.42 1.32 16 40 H 0.16 1.44 8.06 -52.49 -0.42 1.02 16 41 H 0.40 0.59 7.93 -40.82 -0.32 0.26 16 42 H 0.41 1.31 8.93 -40.82 -0.36 0.94 16 43 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 365.02 15.07 5.50 5.50 Total: -1.00 -35.48 365.02 -8.30 -43.78 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: -6.02 Total: 12.01 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: -3.39 Total: -1.90 kcal Atomic # 7 Polarization: -61.01 SS G_CDS: 0.45 Total: -60.55 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: 0.18 Total: -15.98 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.48 -8.30 -43.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981339445.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.623 kcal (2) G-P(sol) polarization free energy of solvation -35.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds