Wall clock time and date at job start Tue Mar 31 2020 12:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86803 * 120.00040 * 2 1 4 4 H 1.48497 * 109.47017 * 240.00398 * 3 2 1 5 5 H 1.48501 * 109.46738 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47076 * 120.00224 * 3 2 1 7 7 C 1.38811 * 119.99954 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99945 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00230 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99991 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.47391 * 325.00261 * 10 9 7 12 12 C 1.53000 * 109.46840 * 85.00591 * 10 9 7 13 13 C 1.53001 * 109.46886 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.46963 * 299.99499 * 13 12 10 15 15 C 1.52997 * 109.47092 * 60.00194 * 14 13 12 16 16 H 1.09001 * 109.47375 * 180.02562 * 15 14 13 17 17 N 1.46506 * 109.47277 * 60.00025 * 15 14 13 18 18 C 1.34774 * 120.00023 * 84.99860 * 17 15 14 19 19 O 1.21615 * 119.99928 * 0.02562 * 18 17 15 20 20 C 1.47296 * 120.00129 * 180.02562 * 18 17 15 21 21 C 1.37931 * 125.90078 * 180.02562 * 20 18 17 22 22 C 1.39437 * 107.45881 * 180.02562 * 21 20 18 23 23 C 1.37925 * 107.46367 * 0.02562 * 22 21 20 24 24 C 1.47299 * 125.90206 * 180.02562 * 23 22 21 25 25 N 1.34771 * 120.00313 * 179.97438 * 24 23 22 26 26 O 1.21622 * 119.99768 * 359.97438 * 24 23 22 27 27 N 1.36753 * 108.20217 * 359.73556 * 23 22 21 28 28 H 0.96997 * 125.66579 * 180.26400 * 27 23 22 29 29 C 1.53002 * 109.46799 * 205.00357 * 10 9 7 30 30 H 0.97001 * 120.00026 * 359.97438 * 1 2 3 31 31 H 0.97002 * 119.99599 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.47194 * 299.99493 * 12 10 9 33 33 H 1.08992 * 109.47399 * 59.99666 * 12 10 9 34 34 H 1.09000 * 109.47437 * 180.02562 * 13 12 10 35 35 H 1.09002 * 109.47508 * 59.99571 * 13 12 10 36 36 H 1.09002 * 109.47067 * 300.00341 * 14 13 12 37 37 H 1.09000 * 109.47312 * 180.02562 * 14 13 12 38 38 H 0.97001 * 119.99986 * 265.00712 * 17 15 14 39 39 H 1.07999 * 126.26920 * 0.02646 * 21 20 18 40 40 H 1.08009 * 126.26576 * 180.02562 * 22 21 20 41 41 H 0.97004 * 119.99827 * 0.02562 * 25 24 23 42 42 H 0.97000 * 120.00333 * 179.97438 * 25 24 23 43 43 H 1.09002 * 109.47075 * 299.99543 * 29 10 9 44 44 H 1.08996 * 109.47407 * 60.00500 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6964 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 2.9688 -3.5505 -0.5899 12 6 2.4218 -4.0356 1.4365 13 6 3.1874 -5.3603 1.4365 14 6 2.3107 -6.4559 0.8266 15 6 1.9469 -6.0771 -0.6104 16 1 1.3220 -6.8575 -1.0448 17 7 3.1710 -5.9337 -1.4025 18 6 3.7381 -7.0174 -1.9687 19 8 3.2334 -8.1141 -1.8226 20 6 4.9691 -6.8733 -2.7647 21 6 5.6484 -7.8945 -3.3956 22 6 6.7529 -7.3308 -4.0333 23 6 6.7295 -5.9751 -3.7805 24 6 7.7117 -4.9894 -4.2634 25 7 7.5730 -3.6875 -3.9437 26 8 8.6479 -5.3503 -4.9508 27 7 5.6333 -5.7032 -3.0094 28 1 5.3717 -4.8264 -2.6875 29 6 1.1808 -4.7521 -0.6103 30 1 -0.4850 0.8401 0.0004 31 1 0.3555 -2.3881 -0.0005 32 1 3.0467 -3.2553 1.8709 33 1 1.5111 -4.1418 2.0259 34 1 3.4462 -5.6305 2.4602 35 1 4.0981 -5.2536 0.8472 36 1 1.4000 -6.5626 1.4159 37 1 2.8559 -7.3998 0.8270 38 1 3.5734 -5.0589 -1.5193 39 1 5.3750 -8.9393 -3.3956 40 1 7.4914 -7.8591 -4.6181 41 1 6.8265 -3.3997 -3.3952 42 1 8.2200 -3.0384 -4.2615 43 1 0.2701 -4.8584 -0.0208 44 1 0.9217 -4.4823 -1.6340 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981339446.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:00 Heat of formation + Delta-G solvation = -33.699476 kcal Electronic energy + Delta-G solvation = -27014.931469 eV Core-core repulsion = 23160.272697 eV Total energy + Delta-G solvation = -3854.658772 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.83007 -40.03861 -39.08400 -37.88896 -34.67139 -34.19041 -33.29609 -31.44984 -31.27364 -30.39582 -29.17482 -27.98110 -24.63048 -23.82998 -22.45776 -21.98196 -21.20801 -20.80160 -20.26910 -19.44808 -18.96360 -17.63654 -17.28587 -17.05371 -15.83772 -15.65910 -15.48087 -15.03576 -14.82473 -14.54627 -14.34249 -14.16786 -14.06259 -13.60579 -13.49597 -13.17281 -13.02581 -12.97242 -12.57698 -12.19664 -12.00199 -11.86712 -11.12619 -10.99475 -10.92382 -10.73473 -10.51715 -10.34744 -10.32553 -10.19630 -10.17038 -9.89523 -9.66159 -9.42770 -9.18285 -9.00029 -8.61660 -7.11095 -5.90389 -3.20233 0.73404 1.92152 2.47708 2.96719 3.00721 3.05075 3.16726 3.31366 3.36340 3.38841 4.43259 4.47074 4.52344 4.86781 4.94519 4.96569 5.00803 5.04112 5.35456 5.44638 5.55070 5.57527 5.61414 5.72234 5.81209 5.84513 5.92145 5.96169 6.07044 6.11827 6.16871 6.33430 6.34633 6.42166 6.46574 6.49306 6.57827 6.71319 6.78500 6.93234 6.94462 7.34561 7.52683 7.77614 7.99179 8.27609 9.38886 9.95828 10.30070 11.31895 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010180 B = 0.003862 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2749.777414 B = 7249.130419 C = 9442.529295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.009 4.009 3 Si 0.905 3.095 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.286 1.286 7 C -0.245 4.245 8 H 0.068 0.932 9 N -0.724 5.724 10 C 0.182 3.818 11 H 0.036 0.964 12 C -0.138 4.138 13 C -0.115 4.115 14 C -0.128 4.128 15 C 0.152 3.848 16 H 0.089 0.911 17 N -0.715 5.715 18 C 0.584 3.416 19 O -0.525 6.525 20 C -0.005 4.005 21 C -0.125 4.125 22 C -0.117 4.117 23 C -0.025 4.025 24 C 0.594 3.406 25 N -0.852 5.852 26 O -0.528 6.528 27 N -0.521 5.521 28 H 0.418 0.582 29 C -0.135 4.135 30 H 0.257 0.743 31 H 0.385 0.615 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.054 0.946 35 H 0.052 0.948 36 H 0.073 0.927 37 H 0.063 0.937 38 H 0.396 0.604 39 H 0.157 0.843 40 H 0.157 0.843 41 H 0.399 0.601 42 H 0.411 0.589 43 H 0.080 0.920 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.050 -12.077 -3.948 16.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.206 4.206 3 Si 0.736 3.264 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.213 1.213 7 C -0.376 4.376 8 H 0.086 0.914 9 N -0.365 5.365 10 C 0.072 3.928 11 H 0.054 0.946 12 C -0.178 4.178 13 C -0.153 4.153 14 C -0.167 4.167 15 C 0.048 3.952 16 H 0.107 0.893 17 N -0.367 5.367 18 C 0.370 3.630 19 O -0.400 6.400 20 C -0.123 4.123 21 C -0.151 4.151 22 C -0.143 4.143 23 C -0.142 4.142 24 C 0.379 3.621 25 N -0.416 5.416 26 O -0.403 6.403 27 N -0.119 5.119 28 H 0.256 0.744 29 C -0.174 4.174 30 H 0.067 0.933 31 H 0.218 0.782 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.231 0.769 39 H 0.175 0.825 40 H 0.174 0.826 41 H 0.227 0.773 42 H 0.242 0.758 43 H 0.098 0.902 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 10.254 -12.936 -4.227 17.040 hybrid contribution 0.086 2.429 0.413 2.465 sum 10.340 -10.507 -3.814 15.227 Atomic orbital electron populations 1.69637 1.05133 1.25946 1.57034 1.24740 0.95477 0.97684 1.02705 0.86308 0.78597 0.83697 0.77768 1.21323 1.21609 1.21254 1.19124 0.90799 0.84114 1.43554 0.91390 1.42411 1.05823 0.99598 1.88639 1.20117 0.93642 0.86106 0.92920 0.94622 1.22304 0.99924 0.95163 1.00441 1.21507 0.98295 0.95665 0.99874 1.21912 1.00788 0.98682 0.95307 1.21040 0.84636 0.98673 0.90856 0.89336 1.46129 1.28447 1.09643 1.52470 1.17180 0.82250 0.84897 0.78660 1.90827 1.62627 1.25503 1.61067 1.20766 0.97825 0.86264 1.07433 1.21302 0.95241 0.99026 0.99499 1.21304 0.99607 0.91094 1.02333 1.20501 0.92612 0.96029 1.05088 1.17165 0.83869 0.81707 0.79362 1.43752 1.32466 1.08712 1.56666 1.90883 1.31808 1.79483 1.38137 1.41996 1.20546 1.09324 1.40054 0.74364 1.22165 0.99421 0.93420 1.02370 0.93315 0.78156 0.92062 0.92366 0.92677 0.92923 0.90855 0.91870 0.76853 0.82499 0.82578 0.77283 0.75759 0.90190 0.91143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.56 13.06 55.49 0.72 -25.83 16 2 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 3 Si 0.91 20.94 29.55 -169.99 -5.02 15.91 16 4 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.24 -6.17 9.93 -15.06 -0.15 -6.32 16 8 H 0.07 1.63 7.83 -52.49 -0.41 1.22 16 9 N -0.72 -16.22 5.12 -53.42 -0.27 -16.49 16 10 C 0.18 3.03 2.60 -67.93 -0.18 2.85 16 11 H 0.04 0.57 6.44 -51.93 -0.33 0.23 16 12 C -0.14 -2.15 5.50 -26.73 -0.15 -2.30 16 13 C -0.12 -1.44 5.77 -26.73 -0.15 -1.60 16 14 C -0.13 -1.54 5.60 -26.73 -0.15 -1.69 16 15 C 0.15 1.87 2.78 -67.90 -0.19 1.68 16 16 H 0.09 1.13 7.58 -51.93 -0.39 0.74 16 17 N -0.72 -8.05 4.23 -54.89 -0.23 -8.28 16 18 C 0.58 7.28 7.77 -12.58 -0.10 7.18 16 19 O -0.52 -8.11 16.54 5.26 0.09 -8.02 16 20 C -0.01 -0.05 7.04 -82.10 -0.58 -0.63 16 21 C -0.12 -1.32 10.60 -39.25 -0.42 -1.74 16 22 C -0.12 -1.20 10.60 -39.25 -0.42 -1.62 16 23 C -0.03 -0.25 7.04 -82.10 -0.58 -0.83 16 24 C 0.59 6.10 8.08 -12.58 -0.10 6.00 16 25 N -0.85 -5.65 8.87 30.40 0.27 -5.38 16 26 O -0.53 -7.32 17.71 5.26 0.09 -7.23 16 27 N -0.52 -4.47 5.90 -5.89 -0.03 -4.51 16 28 H 0.42 2.57 7.34 -40.82 -0.30 2.27 16 29 C -0.14 -1.89 5.08 -26.70 -0.14 -2.03 16 30 H 0.26 7.17 8.31 -40.82 -0.34 6.84 16 31 H 0.38 9.38 7.80 -40.82 -0.32 9.06 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.05 0.63 7.60 -51.93 -0.39 0.24 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.40 3.96 5.96 -40.82 -0.24 3.72 16 39 H 0.16 1.52 8.06 -52.49 -0.42 1.10 16 40 H 0.16 1.43 8.06 -52.48 -0.42 1.01 16 41 H 0.40 1.79 7.93 -40.82 -0.32 1.47 16 42 H 0.41 2.26 8.93 -40.82 -0.36 1.90 16 43 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 44 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 365.03 15.07 5.50 5.50 Total: -1.00 -32.78 365.03 -8.30 -41.07 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: -6.02 Total: 14.64 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: -3.38 Total: -1.39 kcal Atomic # 7 Polarization: -60.94 SS G_CDS: 0.45 Total: -60.49 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: 0.18 Total: -15.25 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.78 -8.30 -41.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981339446.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.373 kcal (2) G-P(sol) polarization free energy of solvation -32.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds