Wall clock time and date at job start Tue Mar 31 2020 12:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86803 * 120.00040 * 2 1 4 4 H 1.48497 * 109.47017 * 240.00398 * 3 2 1 5 5 H 1.48501 * 109.46738 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47076 * 120.00224 * 3 2 1 7 7 C 1.38811 * 119.99954 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99945 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00230 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99991 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.47391 * 325.00261 * 10 9 7 12 12 C 1.53000 * 109.46840 * 85.00591 * 10 9 7 13 13 C 1.53001 * 109.46886 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.46963 * 299.99499 * 13 12 10 15 15 C 1.52997 * 109.47092 * 60.00194 * 14 13 12 16 16 H 1.09001 * 109.47375 * 180.02562 * 15 14 13 17 17 N 1.46506 * 109.47277 * 60.00025 * 15 14 13 18 18 C 1.34774 * 120.00023 * 84.99860 * 17 15 14 19 19 O 1.21615 * 119.99928 * 0.02562 * 18 17 15 20 20 C 1.47296 * 120.00129 * 180.02562 * 18 17 15 21 21 C 1.37931 * 125.90078 * 180.02562 * 20 18 17 22 22 C 1.39437 * 107.45881 * 180.02562 * 21 20 18 23 23 C 1.37925 * 107.46367 * 0.02562 * 22 21 20 24 24 C 1.47299 * 125.90206 * 180.02562 * 23 22 21 25 25 N 1.34771 * 120.00313 * 179.97438 * 24 23 22 26 26 O 1.21622 * 119.99768 * 359.97438 * 24 23 22 27 27 N 1.36753 * 108.20217 * 359.73556 * 23 22 21 28 28 H 0.96997 * 125.66579 * 180.26400 * 27 23 22 29 29 C 1.53002 * 109.46799 * 205.00357 * 10 9 7 30 30 H 0.97001 * 120.00026 * 359.97438 * 1 2 3 31 31 H 0.97002 * 119.99599 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.47194 * 299.99493 * 12 10 9 33 33 H 1.08992 * 109.47399 * 59.99666 * 12 10 9 34 34 H 1.09000 * 109.47437 * 180.02562 * 13 12 10 35 35 H 1.09002 * 109.47508 * 59.99571 * 13 12 10 36 36 H 1.09002 * 109.47067 * 300.00341 * 14 13 12 37 37 H 1.09000 * 109.47312 * 180.02562 * 14 13 12 38 38 H 0.97001 * 119.99986 * 265.00712 * 17 15 14 39 39 H 1.07999 * 126.26920 * 0.02646 * 21 20 18 40 40 H 1.08009 * 126.26576 * 180.02562 * 22 21 20 41 41 H 0.97004 * 119.99827 * 0.02562 * 25 24 23 42 42 H 0.97000 * 120.00333 * 179.97438 * 25 24 23 43 43 H 1.09002 * 109.47075 * 299.99543 * 29 10 9 44 44 H 1.08996 * 109.47407 * 60.00500 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6964 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 2.9688 -3.5505 -0.5899 12 6 2.4218 -4.0356 1.4365 13 6 3.1874 -5.3603 1.4365 14 6 2.3107 -6.4559 0.8266 15 6 1.9469 -6.0771 -0.6104 16 1 1.3220 -6.8575 -1.0448 17 7 3.1710 -5.9337 -1.4025 18 6 3.7381 -7.0174 -1.9687 19 8 3.2334 -8.1141 -1.8226 20 6 4.9691 -6.8733 -2.7647 21 6 5.6484 -7.8945 -3.3956 22 6 6.7529 -7.3308 -4.0333 23 6 6.7295 -5.9751 -3.7805 24 6 7.7117 -4.9894 -4.2634 25 7 7.5730 -3.6875 -3.9437 26 8 8.6479 -5.3503 -4.9508 27 7 5.6333 -5.7032 -3.0094 28 1 5.3717 -4.8264 -2.6875 29 6 1.1808 -4.7521 -0.6103 30 1 -0.4850 0.8401 0.0004 31 1 0.3555 -2.3881 -0.0005 32 1 3.0467 -3.2553 1.8709 33 1 1.5111 -4.1418 2.0259 34 1 3.4462 -5.6305 2.4602 35 1 4.0981 -5.2536 0.8472 36 1 1.4000 -6.5626 1.4159 37 1 2.8559 -7.3998 0.8270 38 1 3.5734 -5.0589 -1.5193 39 1 5.3750 -8.9393 -3.3956 40 1 7.4914 -7.8591 -4.6181 41 1 6.8265 -3.3997 -3.3952 42 1 8.2200 -3.0384 -4.2615 43 1 0.2701 -4.8584 -0.0208 44 1 0.9217 -4.4823 -1.6340 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981339446.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:59 Heat of formation + Delta-G solvation = -58.862191 kcal Electronic energy + Delta-G solvation = -27016.022606 eV Core-core repulsion = 23160.272697 eV Total energy + Delta-G solvation = -3855.749909 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.64786 -41.05880 -39.96297 -39.03150 -36.17393 -34.93765 -34.57209 -32.95148 -32.22675 -31.37517 -30.21053 -29.42713 -25.74703 -25.39229 -23.49321 -22.96994 -22.45020 -21.64818 -21.09289 -20.34901 -20.08590 -19.10062 -18.38676 -17.84684 -17.01777 -16.70351 -16.58147 -16.20218 -15.93164 -15.80545 -15.29507 -15.13308 -15.10061 -14.95550 -14.85522 -14.44747 -13.90498 -13.81689 -13.75532 -13.51748 -13.10547 -13.03354 -12.87633 -12.75405 -12.26207 -12.08467 -11.94100 -11.64294 -11.59633 -11.46558 -11.21774 -11.00704 -10.87980 -10.82613 -10.20544 -10.16958 -9.44296 -8.97325 -7.91091 -5.18913 -0.10144 1.07314 1.49288 1.51368 1.57241 1.68929 2.03052 2.20245 2.25295 2.38468 2.57973 3.42969 3.58828 3.74475 3.81735 3.88151 3.92315 4.15998 4.19935 4.29812 4.31301 4.35745 4.54946 4.66610 4.71941 4.77773 4.80815 4.92823 5.05456 5.10316 5.17770 5.23559 5.32835 5.38165 5.43234 5.51486 5.55817 5.65539 5.66887 5.74273 6.02518 6.28757 6.30587 6.42402 7.03257 7.08940 7.37409 8.14485 8.35854 9.32334 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.010180 B = 0.003862 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2749.777414 B = 7249.130419 C = 9442.529295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.075 4.075 3 Si 0.965 3.035 4 H -0.274 1.274 5 H -0.304 1.304 6 H -0.281 1.281 7 C -0.233 4.233 8 H 0.081 0.919 9 N -0.737 5.737 10 C 0.178 3.822 11 H 0.050 0.950 12 C -0.129 4.129 13 C -0.105 4.105 14 C -0.123 4.123 15 C 0.160 3.840 16 H 0.088 0.912 17 N -0.707 5.707 18 C 0.589 3.411 19 O -0.556 6.556 20 C -0.015 4.015 21 C -0.127 4.127 22 C -0.127 4.127 23 C -0.023 4.023 24 C 0.594 3.406 25 N -0.832 5.832 26 O -0.568 6.568 27 N -0.504 5.504 28 H 0.430 0.570 29 C -0.123 4.123 30 H 0.248 0.752 31 H 0.371 0.629 32 H 0.042 0.958 33 H 0.046 0.954 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.079 0.921 37 H 0.064 0.936 38 H 0.404 0.596 39 H 0.162 0.838 40 H 0.163 0.837 41 H 0.412 0.588 42 H 0.419 0.581 43 H 0.078 0.922 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.539 -12.327 -3.901 17.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.267 4.267 3 Si 0.795 3.205 4 H -0.200 1.200 5 H -0.230 1.230 6 H -0.207 1.207 7 C -0.365 4.365 8 H 0.099 0.901 9 N -0.377 5.377 10 C 0.069 3.931 11 H 0.068 0.932 12 C -0.169 4.169 13 C -0.143 4.143 14 C -0.162 4.162 15 C 0.055 3.945 16 H 0.106 0.894 17 N -0.359 5.359 18 C 0.376 3.624 19 O -0.434 6.434 20 C -0.134 4.134 21 C -0.154 4.154 22 C -0.153 4.153 23 C -0.141 4.141 24 C 0.379 3.621 25 N -0.396 5.396 26 O -0.447 6.447 27 N -0.103 5.103 28 H 0.271 0.729 29 C -0.162 4.162 30 H 0.057 0.943 31 H 0.203 0.797 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.098 0.902 37 H 0.083 0.917 38 H 0.240 0.760 39 H 0.179 0.821 40 H 0.180 0.820 41 H 0.242 0.758 42 H 0.252 0.748 43 H 0.097 0.903 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 11.774 -13.160 -4.154 18.140 hybrid contribution -0.347 2.455 0.406 2.512 sum 11.427 -10.705 -3.748 16.101 Atomic orbital electron populations 1.69799 1.06662 1.25878 1.59825 1.25476 0.96164 1.00870 1.04209 0.85333 0.77219 0.79744 0.78189 1.20009 1.23041 1.20726 1.19576 0.91512 0.85012 1.40424 0.90106 1.42650 1.05465 1.00954 1.88589 1.20376 0.94065 0.84609 0.94002 0.93218 1.22131 0.99473 0.96371 0.98950 1.21414 0.98156 0.93790 1.00942 1.21872 1.01033 0.98396 0.94880 1.20902 0.84831 0.97332 0.91386 0.89416 1.46011 1.27989 1.09857 1.52025 1.17273 0.82349 0.84442 0.78298 1.90815 1.63643 1.26681 1.62296 1.20528 0.97701 0.87078 1.08049 1.21453 0.95218 0.99431 0.99255 1.21470 0.99790 0.91485 1.02600 1.20511 0.92659 0.96023 1.04858 1.17197 0.83305 0.82592 0.78959 1.43611 1.32735 1.07638 1.55654 1.90870 1.33408 1.80277 1.40143 1.41853 1.19729 1.09441 1.39304 0.72908 1.22004 0.99131 0.93353 1.01682 0.94288 0.79715 0.93944 0.93504 0.91540 0.91930 0.90212 0.91688 0.75968 0.82061 0.81965 0.75761 0.74818 0.90350 0.91701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -56.32 13.06 21.65 0.28 -56.04 16 2 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 3 Si 0.97 42.79 29.55 68.60 2.03 44.81 16 4 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 5 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 6 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 7 C -0.23 -11.53 9.93 84.03 0.83 -10.70 16 8 H 0.08 3.71 7.83 -2.91 -0.02 3.69 16 9 N -0.74 -32.60 5.12 -322.94 -1.65 -34.25 16 10 C 0.18 5.62 2.60 44.99 0.12 5.74 16 11 H 0.05 1.44 6.44 -2.39 -0.02 1.43 16 12 C -0.13 -3.81 5.50 30.59 0.17 -3.64 16 13 C -0.10 -2.34 5.77 30.60 0.18 -2.17 16 14 C -0.12 -2.66 5.60 30.59 0.17 -2.49 16 15 C 0.16 3.60 2.78 45.01 0.13 3.73 16 16 H 0.09 2.09 7.58 -2.39 -0.02 2.07 16 17 N -0.71 -14.27 4.23 -445.84 -1.89 -16.16 16 18 C 0.59 13.55 7.77 86.63 0.67 14.22 16 19 O -0.56 -16.41 16.54 -4.08 -0.07 -16.47 16 20 C -0.02 -0.30 7.04 40.69 0.29 -0.02 16 21 C -0.13 -2.52 10.60 22.49 0.24 -2.28 16 22 C -0.13 -2.44 10.60 22.48 0.24 -2.20 16 23 C -0.02 -0.41 7.04 40.69 0.29 -0.12 16 24 C 0.59 11.18 8.08 86.63 0.70 11.88 16 25 N -0.83 -9.00 8.87 -175.98 -1.56 -10.56 16 26 O -0.57 -15.25 17.71 -4.10 -0.07 -15.32 16 27 N -0.50 -7.45 5.90 -172.56 -1.02 -8.47 16 28 H 0.43 3.98 7.34 -92.71 -0.68 3.30 16 29 C -0.12 -3.27 5.08 30.61 0.16 -3.11 16 30 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 31 H 0.37 18.24 7.80 -92.71 -0.72 17.52 16 32 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.06 1.29 7.60 -2.39 -0.02 1.28 16 36 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.40 6.92 5.96 -92.71 -0.55 6.36 16 39 H 0.16 2.97 8.06 -2.91 -0.02 2.94 16 40 H 0.16 2.83 8.06 -2.91 -0.02 2.81 16 41 H 0.41 2.43 7.93 -92.71 -0.74 1.69 16 42 H 0.42 3.63 8.93 -92.71 -0.83 2.80 16 43 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 44 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -70.27 365.03 -1.74 -72.00 By element: Atomic # 1 Polarization: 37.55 SS G_CDS: -2.43 Total: 35.12 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: 4.64 Total: 5.33 kcal Atomic # 7 Polarization: -119.64 SS G_CDS: -5.84 Total: -125.47 kcal Atomic # 8 Polarization: -31.66 SS G_CDS: -0.14 Total: -31.80 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.81 kcal Total: -70.27 -1.74 -72.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981339446.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.141 kcal (2) G-P(sol) polarization free energy of solvation -70.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds