Wall clock time and date at job start Tue Mar 31 2020 12:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86795 * 119.99876 * 2 1 4 4 H 1.48503 * 109.47130 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47440 * 300.00354 * 3 2 1 6 6 H 1.48502 * 109.47009 * 60.00527 * 3 2 1 7 7 C 1.38811 * 119.99882 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99848 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00293 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00433 * 179.97438 * 9 7 2 11 11 H 1.09005 * 109.46891 * 325.00353 * 10 9 7 12 12 C 1.52997 * 109.46844 * 84.99916 * 10 9 7 13 13 C 1.53004 * 109.47138 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.46905 * 300.00248 * 13 12 10 15 15 C 1.53003 * 109.46972 * 59.99803 * 14 13 12 16 16 H 1.09000 * 109.46723 * 60.00066 * 15 14 13 17 17 N 1.46504 * 109.46685 * 179.97438 * 15 14 13 18 18 C 1.34778 * 120.00187 * 275.00058 * 17 15 14 19 19 O 1.21610 * 119.99961 * 0.02562 * 18 17 15 20 20 C 1.47292 * 120.00153 * 180.02562 * 18 17 15 21 21 C 1.37930 * 125.90174 * 179.97438 * 20 18 17 22 22 C 1.39445 * 107.45764 * 179.76284 * 21 20 18 23 23 C 1.37927 * 107.46438 * 0.42056 * 22 21 20 24 24 C 1.47300 * 125.89936 * 179.84109 * 23 22 21 25 25 N 1.34777 * 119.99880 * 179.42054 * 24 23 22 26 26 O 1.21613 * 120.00097 * 359.69423 * 24 23 22 27 27 N 1.36750 * 108.19952 * 359.57821 * 23 22 21 28 28 H 0.97000 * 125.66091 * 180.23552 * 27 23 22 29 29 C 1.52991 * 109.47481 * 205.00312 * 10 9 7 30 30 H 0.96996 * 119.99571 * 359.97438 * 1 2 3 31 31 H 0.97006 * 119.99663 * 0.02562 * 9 7 2 32 32 H 1.08999 * 109.47609 * 300.00333 * 12 10 9 33 33 H 1.09005 * 109.47019 * 60.00516 * 12 10 9 34 34 H 1.08997 * 109.46794 * 59.99979 * 13 12 10 35 35 H 1.08995 * 109.47074 * 180.02562 * 13 12 10 36 36 H 1.08997 * 109.47176 * 299.99498 * 14 13 12 37 37 H 1.09003 * 109.46792 * 179.97438 * 14 13 12 38 38 H 0.97000 * 119.99533 * 95.00378 * 17 15 14 39 39 H 1.07996 * 126.26829 * 0.02562 * 21 20 18 40 40 H 1.08004 * 126.26348 * 180.26545 * 22 21 20 41 41 H 0.96999 * 120.00043 * 180.28067 * 25 24 23 42 42 H 0.97000 * 119.99736 * 0.27066 * 25 24 23 43 43 H 1.09006 * 109.47006 * 59.99816 * 29 10 9 44 44 H 1.09000 * 109.47189 * 300.00375 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6569 -0.0017 11 1 2.9684 -3.5503 -0.5918 12 6 2.4230 -4.0362 1.4349 13 6 3.1885 -5.3610 1.4337 14 6 2.3113 -6.4564 0.8240 15 6 1.9464 -6.0768 -0.6126 16 1 2.8567 -5.9700 -1.2025 17 7 1.1069 -7.1260 -1.1965 18 6 1.6771 -8.2074 -1.7640 19 8 2.8883 -8.3124 -1.7910 20 6 0.8331 -9.2619 -2.3516 21 6 1.2851 -10.4140 -2.9606 22 6 0.1655 -11.1373 -3.3704 23 6 -0.9507 -10.4102 -3.0132 24 6 -2.3500 -10.8001 -3.2572 25 7 -3.3539 -10.0007 -2.8452 26 8 -2.5996 -11.8456 -3.8259 27 7 -0.5340 -9.2675 -2.3880 28 1 -1.1121 -8.5756 -2.0303 29 6 1.1805 -4.7519 -0.6111 30 1 -0.4849 0.8400 0.0004 31 1 0.3556 -2.3881 -0.0005 32 1 3.0483 -3.2561 1.8691 33 1 1.5127 -4.1428 2.0250 34 1 4.0988 -5.2541 0.8437 35 1 3.4481 -5.6315 2.4572 36 1 1.4011 -6.5633 1.4140 37 1 2.8569 -7.4000 0.8228 38 1 0.1408 -7.0423 -1.1747 39 1 2.3168 -10.7047 -3.0919 40 1 0.1716 -12.0911 -3.8772 41 1 -4.2755 -10.2594 -3.0023 42 1 -3.1548 -9.1667 -2.3916 43 1 0.9205 -4.4815 -1.6346 44 1 0.2702 -4.8584 -0.0211 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981339447.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:03 Heat of formation + Delta-G solvation = -35.666987 kcal Electronic energy + Delta-G solvation = -26215.466002 eV Core-core repulsion = 22360.721913 eV Total energy + Delta-G solvation = -3854.744090 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.93240 -39.96697 -39.14803 -37.91595 -34.89115 -34.33787 -33.51097 -31.56384 -31.21163 -30.40817 -29.06860 -27.83742 -24.70342 -23.78503 -22.52726 -21.92932 -21.14966 -20.53923 -20.44037 -19.90734 -19.13828 -17.71788 -17.28374 -16.98304 -16.29640 -15.82230 -15.27842 -15.07956 -14.67141 -14.50628 -14.43874 -14.10177 -14.05888 -13.74849 -13.52808 -13.33121 -13.06711 -13.04820 -12.73529 -12.24825 -12.16906 -11.08790 -11.05679 -10.95016 -10.86855 -10.82058 -10.48869 -10.45323 -10.32155 -10.29136 -10.18098 -9.83669 -9.70195 -9.53159 -9.23635 -8.94605 -8.72484 -7.03483 -5.83789 -3.12523 0.61772 1.82106 2.34584 2.83970 2.88575 2.90318 3.07598 3.38868 3.45361 3.46950 4.33156 4.40482 4.51616 4.80995 4.84196 4.90394 4.98009 5.20757 5.41024 5.47089 5.49539 5.57888 5.62716 5.72408 5.76660 5.86610 5.91611 5.99891 6.04551 6.14678 6.19289 6.21529 6.35165 6.39911 6.43668 6.50547 6.58870 6.63554 6.79841 6.88080 7.03822 7.24042 7.63984 7.65464 7.90542 8.34957 9.46439 10.02641 10.37205 11.38987 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.017654 B = 0.002441 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.704771 B =11467.654560 C =12478.188034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.237 4.237 8 H 0.072 0.928 9 N -0.724 5.724 10 C 0.184 3.816 11 H 0.050 0.950 12 C -0.137 4.137 13 C -0.115 4.115 14 C -0.124 4.124 15 C 0.149 3.851 16 H 0.092 0.908 17 N -0.721 5.721 18 C 0.584 3.416 19 O -0.518 6.518 20 C -0.004 4.004 21 C -0.124 4.124 22 C -0.115 4.115 23 C -0.027 4.027 24 C 0.594 3.406 25 N -0.854 5.854 26 O -0.525 6.525 27 N -0.522 5.522 28 H 0.416 0.584 29 C -0.130 4.130 30 H 0.254 0.746 31 H 0.383 0.617 32 H 0.063 0.937 33 H 0.054 0.946 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.392 0.608 39 H 0.158 0.842 40 H 0.157 0.843 41 H 0.410 0.590 42 H 0.397 0.603 43 H 0.069 0.931 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.966 -20.587 -2.534 21.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.368 4.368 8 H 0.090 0.910 9 N -0.365 5.365 10 C 0.073 3.927 11 H 0.068 0.932 12 C -0.178 4.178 13 C -0.154 4.154 14 C -0.163 4.163 15 C 0.045 3.955 16 H 0.110 0.890 17 N -0.371 5.371 18 C 0.369 3.631 19 O -0.393 6.393 20 C -0.122 4.122 21 C -0.150 4.150 22 C -0.142 4.142 23 C -0.144 4.144 24 C 0.379 3.621 25 N -0.417 5.417 26 O -0.400 6.400 27 N -0.121 5.121 28 H 0.254 0.746 29 C -0.168 4.168 30 H 0.064 0.936 31 H 0.216 0.784 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.225 0.775 39 H 0.176 0.824 40 H 0.175 0.825 41 H 0.242 0.758 42 H 0.225 0.775 43 H 0.087 0.913 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.031 -21.079 -2.893 21.491 hybrid contribution -1.083 1.761 0.478 2.122 sum -4.114 -19.318 -2.415 19.898 Atomic orbital electron populations 1.69666 1.05120 1.25567 1.57898 1.24740 0.95529 0.97724 1.03005 0.86130 0.78865 0.84106 0.77189 1.20497 1.21876 1.21874 1.19289 0.91073 0.84003 1.42440 0.91047 1.42401 1.05711 0.99717 1.88635 1.20091 0.94109 0.85462 0.93029 0.93242 1.22299 0.99738 0.95305 1.00421 1.21489 0.98538 0.95256 1.00073 1.21891 1.00203 0.99054 0.95134 1.21134 0.94466 0.85704 0.94184 0.88974 1.46093 1.10086 1.21430 1.59510 1.17178 0.87252 0.80707 0.77928 1.90854 1.12918 1.77495 1.58005 1.20785 0.81731 1.00104 1.09578 1.21341 0.99942 0.92879 1.00796 1.21331 0.89600 1.00615 1.02618 1.20486 0.94227 0.90906 1.08769 1.17162 0.83354 0.83518 0.78054 1.43733 1.09897 1.25189 1.62917 1.90892 1.83716 1.23542 1.41860 1.41943 1.06639 1.18378 1.45129 0.74565 1.22112 0.99353 0.93327 1.02051 0.93579 0.78385 0.91788 0.92679 0.92032 0.92379 0.92075 0.91986 0.77513 0.82404 0.82518 0.75769 0.77493 0.91260 0.91747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.29 13.06 55.49 0.72 -26.57 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 21.89 29.55 -169.99 -5.02 16.86 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 6 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 7 C -0.24 -6.32 9.93 -15.06 -0.15 -6.47 16 8 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 9 N -0.72 -17.04 5.12 -53.43 -0.27 -17.31 16 10 C 0.18 3.34 2.77 -67.94 -0.19 3.15 16 11 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 12 C -0.14 -2.26 5.50 -26.73 -0.15 -2.41 16 13 C -0.11 -1.53 5.92 -26.73 -0.16 -1.69 16 14 C -0.12 -1.51 5.49 -26.73 -0.15 -1.66 16 15 C 0.15 1.85 2.46 -67.91 -0.17 1.69 16 16 H 0.09 1.32 7.58 -51.93 -0.39 0.93 16 17 N -0.72 -7.18 5.07 -54.90 -0.28 -7.46 16 18 C 0.58 6.80 7.77 -12.58 -0.10 6.70 16 19 O -0.52 -7.93 16.54 5.27 0.09 -7.84 16 20 C 0.00 -0.04 7.04 -82.10 -0.58 -0.62 16 21 C -0.12 -1.20 10.60 -39.24 -0.42 -1.61 16 22 C -0.12 -1.05 10.60 -39.25 -0.42 -1.47 16 23 C -0.03 -0.23 7.04 -82.10 -0.58 -0.81 16 24 C 0.59 5.05 8.08 -12.58 -0.10 4.95 16 25 N -0.85 -3.68 8.87 30.40 0.27 -3.41 16 26 O -0.53 -6.51 17.71 5.27 0.09 -6.41 16 27 N -0.52 -3.48 5.90 -5.89 -0.03 -3.51 16 28 H 0.42 1.39 7.34 -40.82 -0.30 1.09 16 29 C -0.13 -1.84 4.86 -26.72 -0.13 -1.97 16 30 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 31 H 0.38 9.52 7.80 -40.82 -0.32 9.20 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.39 2.71 7.70 -40.82 -0.31 2.40 16 39 H 0.16 1.43 8.06 -52.49 -0.42 1.01 16 40 H 0.16 1.28 8.06 -52.48 -0.42 0.86 16 41 H 0.41 1.34 8.93 -40.82 -0.36 0.98 16 42 H 0.40 0.64 7.93 -40.82 -0.32 0.31 16 43 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 44 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 369.46 15.07 5.57 5.57 Total: -1.00 -34.66 369.46 -8.44 -43.10 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: -6.21 Total: 9.69 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: -3.37 Total: -2.70 kcal Atomic # 7 Polarization: -58.67 SS G_CDS: 0.41 Total: -58.26 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: 0.18 Total: -14.26 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.66 -8.44 -43.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981339447.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.437 kcal (2) G-P(sol) polarization free energy of solvation -34.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds