Wall clock time and date at job start Tue Mar 31 2020 12:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86795 * 119.99876 * 2 1 4 4 H 1.48503 * 109.47130 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47440 * 300.00354 * 3 2 1 6 6 H 1.48502 * 109.47009 * 60.00527 * 3 2 1 7 7 C 1.38811 * 119.99882 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99848 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00293 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00433 * 179.97438 * 9 7 2 11 11 H 1.09005 * 109.46891 * 325.00353 * 10 9 7 12 12 C 1.52997 * 109.46844 * 84.99916 * 10 9 7 13 13 C 1.53004 * 109.47138 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.46905 * 300.00248 * 13 12 10 15 15 C 1.53003 * 109.46972 * 59.99803 * 14 13 12 16 16 H 1.09000 * 109.46723 * 60.00066 * 15 14 13 17 17 N 1.46504 * 109.46685 * 179.97438 * 15 14 13 18 18 C 1.34778 * 120.00187 * 275.00058 * 17 15 14 19 19 O 1.21610 * 119.99961 * 0.02562 * 18 17 15 20 20 C 1.47292 * 120.00153 * 180.02562 * 18 17 15 21 21 C 1.37930 * 125.90174 * 179.97438 * 20 18 17 22 22 C 1.39445 * 107.45764 * 179.76284 * 21 20 18 23 23 C 1.37927 * 107.46438 * 0.42056 * 22 21 20 24 24 C 1.47300 * 125.89936 * 179.84109 * 23 22 21 25 25 N 1.34777 * 119.99880 * 179.42054 * 24 23 22 26 26 O 1.21613 * 120.00097 * 359.69423 * 24 23 22 27 27 N 1.36750 * 108.19952 * 359.57821 * 23 22 21 28 28 H 0.97000 * 125.66091 * 180.23552 * 27 23 22 29 29 C 1.52991 * 109.47481 * 205.00312 * 10 9 7 30 30 H 0.96996 * 119.99571 * 359.97438 * 1 2 3 31 31 H 0.97006 * 119.99663 * 0.02562 * 9 7 2 32 32 H 1.08999 * 109.47609 * 300.00333 * 12 10 9 33 33 H 1.09005 * 109.47019 * 60.00516 * 12 10 9 34 34 H 1.08997 * 109.46794 * 59.99979 * 13 12 10 35 35 H 1.08995 * 109.47074 * 180.02562 * 13 12 10 36 36 H 1.08997 * 109.47176 * 299.99498 * 14 13 12 37 37 H 1.09003 * 109.46792 * 179.97438 * 14 13 12 38 38 H 0.97000 * 119.99533 * 95.00378 * 17 15 14 39 39 H 1.07996 * 126.26829 * 0.02562 * 21 20 18 40 40 H 1.08004 * 126.26348 * 180.26545 * 22 21 20 41 41 H 0.96999 * 120.00043 * 180.28067 * 25 24 23 42 42 H 0.97000 * 119.99736 * 0.27066 * 25 24 23 43 43 H 1.09006 * 109.47006 * 59.99816 * 29 10 9 44 44 H 1.09000 * 109.47189 * 300.00375 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6569 -0.0017 11 1 2.9684 -3.5503 -0.5918 12 6 2.4230 -4.0362 1.4349 13 6 3.1885 -5.3610 1.4337 14 6 2.3113 -6.4564 0.8240 15 6 1.9464 -6.0768 -0.6126 16 1 2.8567 -5.9700 -1.2025 17 7 1.1069 -7.1260 -1.1965 18 6 1.6771 -8.2074 -1.7640 19 8 2.8883 -8.3124 -1.7910 20 6 0.8331 -9.2619 -2.3516 21 6 1.2851 -10.4140 -2.9606 22 6 0.1655 -11.1373 -3.3704 23 6 -0.9507 -10.4102 -3.0132 24 6 -2.3500 -10.8001 -3.2572 25 7 -3.3539 -10.0007 -2.8452 26 8 -2.5996 -11.8456 -3.8259 27 7 -0.5340 -9.2675 -2.3880 28 1 -1.1121 -8.5756 -2.0303 29 6 1.1805 -4.7519 -0.6111 30 1 -0.4849 0.8400 0.0004 31 1 0.3556 -2.3881 -0.0005 32 1 3.0483 -3.2561 1.8691 33 1 1.5127 -4.1428 2.0250 34 1 4.0988 -5.2541 0.8437 35 1 3.4481 -5.6315 2.4572 36 1 1.4011 -6.5633 1.4140 37 1 2.8569 -7.4000 0.8228 38 1 0.1408 -7.0423 -1.1747 39 1 2.3168 -10.7047 -3.0919 40 1 0.1716 -12.0911 -3.8772 41 1 -4.2755 -10.2594 -3.0023 42 1 -3.1548 -9.1667 -2.3916 43 1 0.9205 -4.4815 -1.6346 44 1 0.2702 -4.8584 -0.0211 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981339447.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:02 Heat of formation + Delta-G solvation = -63.366209 kcal Electronic energy + Delta-G solvation = -26216.667131 eV Core-core repulsion = 22360.721913 eV Total energy + Delta-G solvation = -3855.945218 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.64506 -40.91500 -39.93406 -39.09299 -36.30215 -34.97684 -34.89129 -32.95989 -32.26003 -31.30925 -30.17463 -29.27799 -25.77420 -25.40052 -23.49257 -23.05302 -22.07976 -21.44965 -21.27835 -20.87981 -20.11270 -19.10369 -18.29175 -17.82700 -17.44133 -16.61518 -16.47377 -16.11361 -15.92072 -15.62585 -15.34249 -15.18389 -15.09873 -15.02239 -14.86766 -14.51064 -14.23875 -13.78876 -13.75669 -13.56974 -13.39050 -12.91151 -12.84997 -12.26418 -12.14948 -12.02246 -11.97710 -11.72755 -11.66656 -11.49244 -11.38998 -11.05791 -10.87910 -10.86739 -10.23018 -10.18681 -9.45204 -8.99154 -7.94463 -5.21435 -0.11291 1.06189 1.47108 1.48228 1.57282 1.66327 1.96681 2.19847 2.23831 2.39172 2.56480 3.39530 3.59396 3.67577 3.83989 3.86217 4.03559 4.14441 4.18326 4.28189 4.31386 4.43109 4.53340 4.58338 4.66972 4.76694 4.77531 5.00168 5.04735 5.10572 5.16810 5.23038 5.32150 5.35809 5.40779 5.51623 5.54463 5.64468 5.66553 5.75245 6.04934 6.29087 6.31384 6.43426 7.03379 7.11139 7.35729 8.11491 8.34771 9.28988 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.017654 B = 0.002441 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.704771 B =11467.654560 C =12478.188034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.074 4.074 3 Si 0.965 3.035 4 H -0.269 1.269 5 H -0.295 1.295 6 H -0.294 1.294 7 C -0.234 4.234 8 H 0.072 0.928 9 N -0.735 5.735 10 C 0.176 3.824 11 H 0.036 0.964 12 C -0.127 4.127 13 C -0.107 4.107 14 C -0.117 4.117 15 C 0.159 3.841 16 H 0.073 0.927 17 N -0.707 5.707 18 C 0.588 3.412 19 O -0.558 6.558 20 C -0.013 4.013 21 C -0.130 4.130 22 C -0.130 4.130 23 C -0.019 4.019 24 C 0.595 3.405 25 N -0.830 5.830 26 O -0.569 6.569 27 N -0.500 5.500 28 H 0.434 0.566 29 C -0.115 4.115 30 H 0.250 0.750 31 H 0.374 0.626 32 H 0.039 0.961 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.063 0.937 38 H 0.410 0.590 39 H 0.158 0.842 40 H 0.161 0.839 41 H 0.419 0.581 42 H 0.413 0.587 43 H 0.063 0.937 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.625 -21.346 -2.051 21.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.267 4.267 3 Si 0.795 3.205 4 H -0.193 1.193 5 H -0.222 1.222 6 H -0.222 1.222 7 C -0.366 4.366 8 H 0.089 0.911 9 N -0.375 5.375 10 C 0.067 3.933 11 H 0.054 0.946 12 C -0.167 4.167 13 C -0.146 4.146 14 C -0.155 4.155 15 C 0.054 3.946 16 H 0.091 0.909 17 N -0.358 5.358 18 C 0.375 3.625 19 O -0.436 6.436 20 C -0.132 4.132 21 C -0.157 4.157 22 C -0.156 4.156 23 C -0.137 4.137 24 C 0.380 3.620 25 N -0.394 5.394 26 O -0.447 6.447 27 N -0.099 5.099 28 H 0.275 0.725 29 C -0.154 4.154 30 H 0.059 0.941 31 H 0.206 0.794 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.082 0.918 38 H 0.246 0.754 39 H 0.175 0.825 40 H 0.178 0.822 41 H 0.252 0.748 42 H 0.244 0.756 43 H 0.082 0.918 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.719 -21.815 -2.375 22.257 hybrid contribution -0.887 1.947 0.324 2.164 sum -4.606 -19.867 -2.051 20.497 Atomic orbital electron populations 1.69793 1.06343 1.25813 1.59899 1.25450 0.96350 1.00714 1.04138 0.85186 0.78280 0.80420 0.76596 1.19345 1.22201 1.22165 1.19599 0.91289 0.85313 1.40364 0.91052 1.42567 1.05471 1.00762 1.88667 1.20311 0.93909 0.84756 0.94275 0.94613 1.22106 0.99679 0.96389 0.98566 1.21416 0.98135 0.93729 1.01312 1.21824 1.00622 0.98395 0.94692 1.20835 0.93787 0.85447 0.94496 0.90851 1.45824 1.10851 1.20334 1.58758 1.17326 0.86856 0.80960 0.77362 1.90838 1.14740 1.78401 1.59635 1.20410 0.82584 0.99667 1.10498 1.21458 1.00276 0.93118 1.00804 1.21467 0.89786 1.01148 1.03213 1.20497 0.94204 0.90959 1.08081 1.17166 0.83813 0.83283 0.77779 1.43560 1.09581 1.24995 1.61313 1.90880 1.84222 1.25522 1.44084 1.41766 1.05811 1.18256 1.44114 0.72506 1.21886 0.99191 0.92730 1.01543 0.94113 0.79355 0.94183 0.92656 0.92342 0.90651 0.90493 0.91822 0.75404 0.82464 0.82151 0.74764 0.75593 0.91814 0.90210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.06 13.06 21.65 0.28 -56.78 16 2 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 3 Si 0.97 45.22 29.55 68.60 2.03 47.24 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 5 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 6 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 7 C -0.23 -12.50 9.93 84.03 0.83 -11.66 16 8 H 0.07 3.74 7.83 -2.91 -0.02 3.72 16 9 N -0.74 -34.60 5.12 -322.95 -1.65 -36.25 16 10 C 0.18 6.32 2.77 44.99 0.12 6.44 16 11 H 0.04 1.38 8.08 -2.38 -0.02 1.36 16 12 C -0.13 -4.07 5.50 30.59 0.17 -3.90 16 13 C -0.11 -2.66 5.92 30.60 0.18 -2.48 16 14 C -0.12 -2.55 5.49 30.60 0.17 -2.39 16 15 C 0.16 3.67 2.46 45.00 0.11 3.78 16 16 H 0.07 2.04 7.58 -2.39 -0.02 2.02 16 17 N -0.71 -12.40 5.07 -445.86 -2.26 -14.66 16 18 C 0.59 12.75 7.77 86.62 0.67 13.42 16 19 O -0.56 -16.72 16.54 -4.06 -0.07 -16.79 16 20 C -0.01 -0.23 7.04 40.68 0.29 0.05 16 21 C -0.13 -2.41 10.60 22.49 0.24 -2.17 16 22 C -0.13 -2.24 10.60 22.49 0.24 -2.01 16 23 C -0.02 -0.28 7.04 40.69 0.29 0.00 16 24 C 0.59 9.01 8.08 86.63 0.70 9.71 16 25 N -0.83 -4.89 8.87 -175.98 -1.56 -6.45 16 26 O -0.57 -13.60 17.71 -4.07 -0.07 -13.67 16 27 N -0.50 -5.36 5.90 -172.56 -1.02 -6.38 16 28 H 0.43 1.36 7.34 -92.71 -0.68 0.68 16 29 C -0.11 -3.07 4.86 30.60 0.15 -2.92 16 30 H 0.25 14.35 8.31 -92.71 -0.77 13.57 16 31 H 0.37 18.67 7.80 -92.70 -0.72 17.95 16 32 H 0.04 1.45 8.14 -2.39 -0.02 1.44 16 33 H 0.05 1.76 8.14 -2.38 -0.02 1.75 16 34 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.41 4.30 7.70 -92.71 -0.71 3.58 16 39 H 0.16 2.83 8.06 -2.91 -0.02 2.80 16 40 H 0.16 2.57 8.06 -2.91 -0.02 2.54 16 41 H 0.42 1.65 8.93 -92.71 -0.83 0.82 16 42 H 0.41 -0.14 7.93 -92.71 -0.74 -0.87 16 43 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 44 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -75.69 369.46 -2.29 -77.98 By element: Atomic # 1 Polarization: 26.14 SS G_CDS: -2.59 Total: 23.55 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: 4.63 Total: 2.21 kcal Atomic # 7 Polarization: -114.31 SS G_CDS: -6.21 Total: -120.52 kcal Atomic # 8 Polarization: -30.32 SS G_CDS: -0.14 Total: -30.46 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.24 kcal Total: -75.69 -2.29 -77.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981339447.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.615 kcal (2) G-P(sol) polarization free energy of solvation -75.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds