Wall clock time and date at job start Tue Mar 31 2020 12:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 119.99891 * 2 1 4 4 H 1.48504 * 109.47166 * 269.99889 * 3 2 1 5 5 H 1.48501 * 109.47423 * 30.00270 * 3 2 1 6 6 H 1.48508 * 109.46891 * 150.00071 * 3 2 1 7 7 C 1.38812 * 119.99556 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99185 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00390 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99971 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.47092 * 34.99937 * 10 9 7 12 12 C 1.53000 * 109.47023 * 274.99678 * 10 9 7 13 13 C 1.52996 * 109.47328 * 300.00366 * 12 10 9 14 14 C 1.53002 * 109.46891 * 299.99597 * 13 12 10 15 15 C 1.52997 * 109.46978 * 60.00410 * 14 13 12 16 16 H 1.09001 * 109.47375 * 59.99908 * 15 14 13 17 17 N 1.46504 * 109.47417 * 179.97438 * 15 14 13 18 18 C 1.34774 * 119.99618 * 275.00242 * 17 15 14 19 19 O 1.21677 * 120.00111 * 359.97438 * 18 17 15 20 20 C 1.46815 * 119.99869 * 179.97438 * 18 17 15 21 21 C 1.36347 * 125.84594 * 179.71225 * 20 18 17 22 22 C 1.41311 * 107.00561 * 179.85086 * 21 20 18 23 23 C 1.47396 * 126.45980 * 180.13171 * 22 21 20 24 24 N 1.34775 * 119.99614 * 180.30506 * 23 22 21 25 25 O 1.21610 * 120.00061 * 0.30936 * 23 22 21 26 26 C 1.38204 * 107.07638 * 0.41539 * 22 21 20 27 27 N 1.34261 * 108.39562 * 359.74261 * 26 22 21 28 28 H 0.96998 * 125.39321 * 179.97438 * 27 26 22 29 29 C 1.52997 * 109.47007 * 154.99885 * 10 9 7 30 30 H 0.96997 * 119.99679 * 359.97438 * 1 2 3 31 31 H 0.97004 * 119.99805 * 0.02562 * 9 7 2 32 32 H 1.09004 * 109.46724 * 60.00549 * 12 10 9 33 33 H 1.09001 * 109.47194 * 179.97438 * 12 10 9 34 34 H 1.09004 * 109.47108 * 179.97438 * 13 12 10 35 35 H 1.08992 * 109.47554 * 59.99639 * 13 12 10 36 36 H 1.09001 * 109.47142 * 300.00176 * 14 13 12 37 37 H 1.09002 * 109.47097 * 180.02562 * 14 13 12 38 38 H 0.96997 * 120.00148 * 94.99044 * 17 15 14 39 39 H 1.08001 * 126.49858 * 359.97438 * 21 20 18 40 40 H 0.97000 * 120.00569 * 0.02562 * 24 23 22 41 41 H 0.97004 * 120.00142 * 180.02562 * 24 23 22 42 42 H 1.08004 * 125.80379 * 179.76661 * 26 22 21 43 43 H 1.08998 * 109.47533 * 179.97438 * 29 10 9 44 44 H 1.08996 * 109.47853 * 300.00060 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 2.9687 -3.5505 0.5889 12 6 2.4218 -4.0356 -1.4376 13 6 1.1435 -4.1847 -2.2649 14 6 0.2664 -5.2801 -1.6553 15 6 -0.0975 -4.9012 -0.2183 16 1 -0.6425 -3.9573 -0.2183 17 7 -0.9380 -5.9498 0.3653 18 6 -2.2701 -5.9368 0.1615 19 8 -2.7749 -5.0541 -0.5067 20 6 -3.1123 -6.9879 0.7459 21 6 -4.4665 -7.0874 0.6214 22 6 -4.8633 -8.2417 1.3335 23 6 -6.2383 -8.7530 1.4767 24 7 -6.4705 -9.8696 2.1948 25 8 -7.1630 -8.1674 0.9468 26 6 -3.7198 -8.7971 1.8756 27 7 -2.6705 -8.0392 1.5191 28 1 -1.7475 -8.2052 1.7669 29 6 1.1808 -4.7521 0.6091 30 1 -0.4849 0.8400 0.0004 31 1 0.3555 -2.3880 -0.0005 32 1 3.0468 -3.2553 -1.8718 33 1 2.9672 -4.9794 -1.4376 34 1 1.4028 -4.4541 -3.2888 35 1 0.5985 -3.2408 -2.2649 36 1 0.8114 -6.2240 -1.6553 37 1 -0.6442 -5.3866 -2.2450 38 1 -0.5356 -6.6533 0.8982 39 1 -5.1130 -6.4131 0.0795 40 1 -5.7330 -10.3366 2.6176 41 1 -7.3754 -10.2064 2.2888 42 1 -3.6774 -9.6895 2.4826 43 1 1.7256 -5.6962 0.6087 44 1 0.9215 -4.4823 1.6328 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981422531.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:21 Heat of formation + Delta-G solvation = -31.014063 kcal Electronic energy + Delta-G solvation = -26570.626424 eV Core-core repulsion = 22716.084100 eV Total energy + Delta-G solvation = -3854.542324 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.84397 -39.69315 -38.96234 -37.84467 -34.58534 -33.93562 -33.09874 -31.56092 -30.96294 -30.21226 -28.83286 -27.96264 -23.95177 -23.64245 -23.26429 -21.93193 -21.33641 -20.43499 -19.87182 -19.50159 -18.31680 -17.33727 -17.14659 -16.57196 -15.99390 -15.83845 -15.50966 -14.77164 -14.62876 -14.53164 -14.12314 -13.95316 -13.77222 -13.66585 -13.51654 -13.48380 -13.03972 -12.64139 -12.37175 -12.06409 -11.79288 -11.41876 -10.92082 -10.83797 -10.74193 -10.35104 -10.29912 -10.20371 -10.11081 -10.03672 -9.95187 -9.61258 -9.51615 -9.42046 -9.00525 -8.82275 -8.62419 -6.93322 -5.72405 -3.02148 1.16858 1.61476 2.59754 3.05557 3.18138 3.40958 3.43627 3.45517 3.50185 3.52543 4.40804 4.58047 4.61335 4.70303 4.93164 5.09034 5.18337 5.43350 5.51978 5.60543 5.65579 5.69298 5.72396 5.81234 5.86533 6.04914 6.06556 6.13978 6.15990 6.32414 6.39184 6.42691 6.52928 6.59176 6.62787 6.77053 6.82248 6.84609 7.00226 7.09992 7.11189 7.51220 7.72685 8.09844 8.22295 8.45186 9.56247 10.13273 10.47292 11.49620 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020172 B = 0.002585 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.696951 B =10830.808461 C =11551.662590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.012 4.012 3 Si 0.905 3.095 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.283 1.283 7 C -0.241 4.241 8 H 0.070 0.930 9 N -0.721 5.721 10 C 0.179 3.821 11 H 0.051 0.949 12 C -0.135 4.135 13 C -0.110 4.110 14 C -0.120 4.120 15 C 0.146 3.854 16 H 0.103 0.897 17 N -0.725 5.725 18 C 0.582 3.418 19 O -0.512 6.512 20 C -0.050 4.050 21 C -0.047 4.047 22 C -0.238 4.238 23 C 0.594 3.406 24 N -0.857 5.857 25 O -0.543 6.543 26 C 0.068 3.932 27 N -0.523 5.523 28 H 0.421 0.579 29 C -0.127 4.127 30 H 0.256 0.744 31 H 0.385 0.615 32 H 0.062 0.938 33 H 0.042 0.958 34 H 0.049 0.951 35 H 0.079 0.921 36 H 0.052 0.948 37 H 0.060 0.940 38 H 0.387 0.613 39 H 0.160 0.840 40 H 0.397 0.603 41 H 0.403 0.597 42 H 0.180 0.820 43 H 0.060 0.940 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.176 -25.588 5.913 26.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.208 4.208 3 Si 0.736 3.264 4 H -0.218 1.218 5 H -0.219 1.219 6 H -0.209 1.209 7 C -0.372 4.372 8 H 0.088 0.912 9 N -0.364 5.364 10 C 0.069 3.931 11 H 0.069 0.931 12 C -0.176 4.176 13 C -0.148 4.148 14 C -0.159 4.159 15 C 0.043 3.957 16 H 0.120 0.880 17 N -0.375 5.375 18 C 0.368 3.632 19 O -0.386 6.386 20 C -0.161 4.161 21 C -0.072 4.072 22 C -0.249 4.249 23 C 0.381 3.619 24 N -0.420 5.420 25 O -0.420 6.420 26 C -0.074 4.074 27 N -0.118 5.118 28 H 0.259 0.741 29 C -0.166 4.166 30 H 0.066 0.934 31 H 0.220 0.780 32 H 0.081 0.919 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.098 0.902 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.220 0.780 39 H 0.178 0.822 40 H 0.225 0.775 41 H 0.234 0.766 42 H 0.197 0.803 43 H 0.078 0.922 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.728 -24.201 5.020 24.995 hybrid contribution 0.853 -0.032 0.704 1.107 sum -2.874 -24.233 5.723 25.065 Atomic orbital electron populations 1.69666 1.05021 1.25696 1.57287 1.24746 0.95463 0.97621 1.03004 0.86236 0.78585 0.84127 0.77472 1.21782 1.21854 1.20882 1.19203 0.90917 0.84128 1.42998 0.91245 1.42504 1.05778 0.99581 1.88529 1.20149 0.93937 0.85965 0.93086 0.93095 1.22185 0.96906 0.99449 0.99045 1.21359 0.96681 0.99323 0.97441 1.21847 0.99736 0.98688 0.95604 1.21130 0.91069 0.91143 0.92389 0.87957 1.46063 1.06639 1.30266 1.54497 1.17052 0.81667 0.83973 0.80514 1.90929 1.73149 1.35686 1.38809 1.20332 0.94743 0.94485 1.06586 1.21137 0.92186 0.96130 0.97781 1.19585 0.92391 1.01822 1.11056 1.17410 0.87541 0.79676 0.77323 1.43677 1.13051 1.29196 1.56099 1.90845 1.45080 1.58237 1.47815 1.22347 0.86130 0.97609 1.01359 1.41756 1.09802 1.20953 1.39266 0.74091 1.22081 0.95389 0.99564 0.99574 0.93442 0.78015 0.91942 0.93946 0.93211 0.90224 0.92877 0.92147 0.78046 0.82249 0.77499 0.76632 0.80326 0.92175 0.91408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.33 13.06 55.49 0.72 -27.61 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.90 22.45 29.55 -169.99 -5.02 17.43 16 4 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 5 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.24 -6.56 9.93 -15.06 -0.15 -6.71 16 8 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 9 N -0.72 -17.39 4.28 -53.43 -0.23 -17.62 16 10 C 0.18 3.33 3.10 -67.93 -0.21 3.12 16 11 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 12 C -0.14 -2.30 5.61 -26.73 -0.15 -2.45 16 13 C -0.11 -1.87 5.77 -26.73 -0.15 -2.03 16 14 C -0.12 -1.82 5.49 -26.73 -0.15 -1.97 16 15 C 0.15 2.28 2.28 -67.93 -0.15 2.13 16 16 H 0.10 2.09 5.94 -51.93 -0.31 1.79 16 17 N -0.72 -8.94 5.07 -55.07 -0.28 -9.22 16 18 C 0.58 8.61 7.76 -12.79 -0.10 8.51 16 19 O -0.51 -10.15 16.52 5.21 0.09 -10.06 16 20 C -0.05 -0.58 6.99 -82.41 -0.58 -1.16 16 21 C -0.05 -0.61 10.37 -39.10 -0.41 -1.01 16 22 C -0.24 -2.37 6.13 -105.01 -0.64 -3.01 16 23 C 0.59 6.30 8.09 -12.53 -0.10 6.20 16 24 N -0.86 -4.54 8.86 30.43 0.27 -4.27 16 25 O -0.54 -8.45 17.76 5.27 0.09 -8.35 16 26 C 0.07 0.38 11.43 -16.50 -0.19 0.19 16 27 N -0.52 -3.38 5.91 -9.30 -0.05 -3.44 16 28 H 0.42 1.27 8.14 -40.82 -0.33 0.94 16 29 C -0.13 -1.88 5.08 -26.73 -0.14 -2.02 16 30 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 31 H 0.38 10.08 6.06 -40.82 -0.25 9.84 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 33 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.08 1.66 7.60 -51.93 -0.39 1.27 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.39 3.16 7.68 -40.82 -0.31 2.85 16 39 H 0.16 2.33 8.06 -52.49 -0.42 1.91 16 40 H 0.40 0.66 7.74 -40.82 -0.32 0.34 16 41 H 0.40 1.76 8.93 -40.82 -0.36 1.39 16 42 H 0.18 0.11 7.44 -52.48 -0.39 -0.28 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 364.64 15.07 5.50 5.50 Total: -1.00 -38.05 364.64 -8.14 -46.20 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: -6.01 Total: 12.08 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: -3.21 Total: -0.63 kcal Atomic # 7 Polarization: -62.58 SS G_CDS: 0.43 Total: -62.15 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: 0.18 Total: -18.42 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -38.05 -8.14 -46.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981422531.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.183 kcal (2) G-P(sol) polarization free energy of solvation -38.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds