Wall clock time and date at job start Tue Mar 31 2020 12:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 119.99891 * 2 1 4 4 H 1.48504 * 109.47166 * 269.99889 * 3 2 1 5 5 H 1.48501 * 109.47423 * 30.00270 * 3 2 1 6 6 H 1.48508 * 109.46891 * 150.00071 * 3 2 1 7 7 C 1.38812 * 119.99556 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99185 * 180.02562 * 7 2 1 9 9 N 1.36931 * 120.00390 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99971 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.47092 * 34.99937 * 10 9 7 12 12 C 1.53000 * 109.47023 * 274.99678 * 10 9 7 13 13 C 1.52996 * 109.47328 * 300.00366 * 12 10 9 14 14 C 1.53002 * 109.46891 * 299.99597 * 13 12 10 15 15 C 1.52997 * 109.46978 * 60.00410 * 14 13 12 16 16 H 1.09001 * 109.47375 * 59.99908 * 15 14 13 17 17 N 1.46504 * 109.47417 * 179.97438 * 15 14 13 18 18 C 1.34774 * 119.99618 * 275.00242 * 17 15 14 19 19 O 1.21677 * 120.00111 * 359.97438 * 18 17 15 20 20 C 1.46815 * 119.99869 * 179.97438 * 18 17 15 21 21 C 1.36347 * 125.84594 * 179.71225 * 20 18 17 22 22 C 1.41311 * 107.00561 * 179.85086 * 21 20 18 23 23 C 1.47396 * 126.45980 * 180.13171 * 22 21 20 24 24 N 1.34775 * 119.99614 * 180.30506 * 23 22 21 25 25 O 1.21610 * 120.00061 * 0.30936 * 23 22 21 26 26 C 1.38204 * 107.07638 * 0.41539 * 22 21 20 27 27 N 1.34261 * 108.39562 * 359.74261 * 26 22 21 28 28 H 0.96998 * 125.39321 * 179.97438 * 27 26 22 29 29 C 1.52997 * 109.47007 * 154.99885 * 10 9 7 30 30 H 0.96997 * 119.99679 * 359.97438 * 1 2 3 31 31 H 0.97004 * 119.99805 * 0.02562 * 9 7 2 32 32 H 1.09004 * 109.46724 * 60.00549 * 12 10 9 33 33 H 1.09001 * 109.47194 * 179.97438 * 12 10 9 34 34 H 1.09004 * 109.47108 * 179.97438 * 13 12 10 35 35 H 1.08992 * 109.47554 * 59.99639 * 13 12 10 36 36 H 1.09001 * 109.47142 * 300.00176 * 14 13 12 37 37 H 1.09002 * 109.47097 * 180.02562 * 14 13 12 38 38 H 0.96997 * 120.00148 * 94.99044 * 17 15 14 39 39 H 1.08001 * 126.49858 * 359.97438 * 21 20 18 40 40 H 0.97000 * 120.00569 * 0.02562 * 24 23 22 41 41 H 0.97004 * 120.00142 * 180.02562 * 24 23 22 42 42 H 1.08004 * 125.80379 * 179.76661 * 26 22 21 43 43 H 1.08998 * 109.47533 * 179.97438 * 29 10 9 44 44 H 1.08996 * 109.47853 * 300.00060 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 1 2.9687 -3.5505 0.5889 12 6 2.4218 -4.0356 -1.4376 13 6 1.1435 -4.1847 -2.2649 14 6 0.2664 -5.2801 -1.6553 15 6 -0.0975 -4.9012 -0.2183 16 1 -0.6425 -3.9573 -0.2183 17 7 -0.9380 -5.9498 0.3653 18 6 -2.2701 -5.9368 0.1615 19 8 -2.7749 -5.0541 -0.5067 20 6 -3.1123 -6.9879 0.7459 21 6 -4.4665 -7.0874 0.6214 22 6 -4.8633 -8.2417 1.3335 23 6 -6.2383 -8.7530 1.4767 24 7 -6.4705 -9.8696 2.1948 25 8 -7.1630 -8.1674 0.9468 26 6 -3.7198 -8.7971 1.8756 27 7 -2.6705 -8.0392 1.5191 28 1 -1.7475 -8.2052 1.7669 29 6 1.1808 -4.7521 0.6091 30 1 -0.4849 0.8400 0.0004 31 1 0.3555 -2.3880 -0.0005 32 1 3.0468 -3.2553 -1.8718 33 1 2.9672 -4.9794 -1.4376 34 1 1.4028 -4.4541 -3.2888 35 1 0.5985 -3.2408 -2.2649 36 1 0.8114 -6.2240 -1.6553 37 1 -0.6442 -5.3866 -2.2450 38 1 -0.5356 -6.6533 0.8982 39 1 -5.1130 -6.4131 0.0795 40 1 -5.7330 -10.3366 2.6176 41 1 -7.3754 -10.2064 2.2888 42 1 -3.6774 -9.6895 2.4826 43 1 1.7256 -5.6962 0.6087 44 1 0.9215 -4.4823 1.6328 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981422531.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:20 Heat of formation + Delta-G solvation = -64.318479 kcal Electronic energy + Delta-G solvation = -26572.070612 eV Core-core repulsion = 22716.084100 eV Total energy + Delta-G solvation = -3855.986512 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.62770 -40.87657 -39.84486 -39.18616 -36.09029 -34.81627 -34.62488 -32.73220 -32.31561 -31.28682 -30.13336 -29.38211 -25.71087 -24.79554 -24.14692 -23.31958 -22.55814 -21.35904 -20.77853 -20.41325 -19.59812 -19.21806 -17.89215 -17.37590 -17.16680 -16.84567 -16.54199 -16.45639 -15.81828 -15.65383 -15.39142 -15.28921 -15.17474 -14.91020 -14.68333 -14.51853 -14.36027 -13.76377 -13.45818 -13.43595 -13.33027 -12.87114 -12.83825 -12.59972 -12.18920 -12.14727 -11.81136 -11.63521 -11.55377 -11.27109 -11.20954 -10.95966 -10.83037 -10.62824 -10.22308 -10.13066 -9.39940 -8.95259 -7.90292 -5.18079 0.38700 0.77576 1.45590 1.47637 1.55758 1.90229 2.07345 2.18639 2.57354 2.57869 2.78266 3.43064 3.70663 3.80612 3.89306 3.92776 4.07297 4.08651 4.18126 4.29107 4.36162 4.44826 4.56972 4.69566 4.74909 4.80734 4.82539 4.88996 5.01020 5.10125 5.18747 5.29206 5.34809 5.40439 5.43986 5.51363 5.55100 5.63688 5.68274 5.99384 6.31438 6.34986 6.52856 6.63643 7.15737 7.36823 7.48068 8.17213 8.36548 9.33225 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.020172 B = 0.002585 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.696951 B =10830.808461 C =11551.662590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.083 4.083 3 Si 0.969 3.031 4 H -0.292 1.292 5 H -0.301 1.301 6 H -0.265 1.265 7 C -0.229 4.229 8 H 0.080 0.920 9 N -0.735 5.735 10 C 0.166 3.834 11 H 0.057 0.943 12 C -0.126 4.126 13 C -0.108 4.108 14 C -0.109 4.109 15 C 0.152 3.848 16 H 0.042 0.958 17 N -0.702 5.702 18 C 0.579 3.421 19 O -0.579 6.579 20 C -0.066 4.066 21 C -0.076 4.076 22 C -0.271 4.271 23 C 0.589 3.411 24 N -0.827 5.827 25 O -0.609 6.609 26 C 0.130 3.870 27 N -0.499 5.499 28 H 0.444 0.556 29 C -0.113 4.113 30 H 0.246 0.754 31 H 0.369 0.631 32 H 0.039 0.961 33 H 0.089 0.911 34 H 0.067 0.933 35 H 0.025 0.975 36 H 0.096 0.904 37 H 0.039 0.961 38 H 0.414 0.586 39 H 0.119 0.881 40 H 0.420 0.580 41 H 0.411 0.589 42 H 0.249 0.751 43 H 0.114 0.886 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.044 -30.509 8.135 31.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.626 5.626 2 C -0.275 4.275 3 Si 0.799 3.201 4 H -0.219 1.219 5 H -0.228 1.228 6 H -0.189 1.189 7 C -0.361 4.361 8 H 0.098 0.902 9 N -0.376 5.376 10 C 0.057 3.943 11 H 0.075 0.925 12 C -0.166 4.166 13 C -0.146 4.146 14 C -0.148 4.148 15 C 0.047 3.953 16 H 0.060 0.940 17 N -0.353 5.353 18 C 0.367 3.633 19 O -0.458 6.458 20 C -0.177 4.177 21 C -0.103 4.103 22 C -0.281 4.281 23 C 0.377 3.623 24 N -0.391 5.391 25 O -0.492 6.492 26 C -0.014 4.014 27 N -0.095 5.095 28 H 0.286 0.714 29 C -0.151 4.151 30 H 0.055 0.945 31 H 0.202 0.798 32 H 0.058 0.942 33 H 0.107 0.893 34 H 0.085 0.915 35 H 0.044 0.956 36 H 0.114 0.886 37 H 0.058 0.942 38 H 0.251 0.749 39 H 0.137 0.863 40 H 0.252 0.748 41 H 0.242 0.758 42 H 0.265 0.735 43 H 0.133 0.867 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.453 -29.253 7.312 30.157 hybrid contribution -0.095 1.322 0.051 1.326 sum -0.547 -27.932 7.363 28.891 Atomic orbital electron populations 1.69861 1.06783 1.25651 1.60258 1.25555 0.96186 1.01145 1.04611 0.85195 0.77824 0.79934 0.77172 1.21933 1.22849 1.18929 1.19659 0.91469 0.85302 1.39713 0.90243 1.42769 1.05354 1.01075 1.88398 1.20526 0.94304 0.84836 0.94597 0.92526 1.22063 0.96474 1.00932 0.97105 1.21296 0.96718 0.97571 0.99011 1.21749 0.98924 0.99632 0.94491 1.20799 0.91203 0.89701 0.93561 0.93964 1.45684 1.05613 1.29975 1.54048 1.17502 0.82346 0.83809 0.79626 1.90900 1.74419 1.38560 1.41948 1.19558 0.93559 0.95767 1.08850 1.21056 0.92927 0.97417 0.98908 1.19583 0.93786 1.01840 1.12850 1.17615 0.87149 0.80377 0.77177 1.43384 1.14465 1.27188 1.54024 1.90815 1.46895 1.60571 1.50904 1.23244 0.83533 0.97093 0.97521 1.41648 1.11340 1.19040 1.37504 0.71356 1.21957 0.94368 1.00498 0.98311 0.94473 0.79785 0.94226 0.89280 0.91450 0.95609 0.88570 0.94225 0.74915 0.86310 0.74823 0.75773 0.73510 0.86732 0.91961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.81 13.06 21.65 0.28 -62.52 16 2 C -0.08 -4.92 5.50 84.86 0.47 -4.45 16 3 Si 0.97 47.52 29.55 68.60 2.03 49.54 16 4 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 5 H -0.30 -15.10 7.11 99.48 0.71 -14.39 16 6 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 7 C -0.23 -12.69 9.93 84.03 0.83 -11.86 16 8 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 9 N -0.74 -36.50 4.28 -322.94 -1.38 -37.88 16 10 C 0.17 5.91 3.10 44.99 0.14 6.05 16 11 H 0.06 1.98 8.08 -2.39 -0.02 1.96 16 12 C -0.13 -4.00 5.61 30.59 0.17 -3.83 16 13 C -0.11 -3.66 5.77 30.59 0.18 -3.48 16 14 C -0.11 -3.19 5.49 30.59 0.17 -3.03 16 15 C 0.15 4.71 2.28 44.99 0.10 4.81 16 16 H 0.04 1.87 5.94 -2.39 -0.01 1.86 16 17 N -0.70 -16.35 5.07 -446.36 -2.26 -18.62 16 18 C 0.58 17.75 7.76 86.49 0.67 18.42 16 19 O -0.58 -25.40 16.52 -4.27 -0.07 -25.47 16 20 C -0.07 -1.50 6.99 40.01 0.28 -1.23 16 21 C -0.08 -2.10 10.37 22.58 0.23 -1.87 16 22 C -0.27 -5.00 6.13 -20.12 -0.12 -5.12 16 23 C 0.59 12.10 8.09 86.65 0.70 12.80 16 24 N -0.83 -6.25 8.86 -175.91 -1.56 -7.81 16 25 O -0.61 -20.14 17.76 -4.06 -0.07 -20.21 16 26 C 0.13 0.77 11.43 84.31 0.96 1.73 16 27 N -0.50 -4.28 5.91 -183.35 -1.08 -5.37 16 28 H 0.44 -0.03 8.14 -92.71 -0.75 -0.78 16 29 C -0.11 -3.03 5.08 30.60 0.16 -2.87 16 30 H 0.25 15.60 8.31 -92.71 -0.77 14.83 16 31 H 0.37 20.65 6.06 -92.71 -0.56 20.09 16 32 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 35 H 0.02 1.14 7.60 -2.39 -0.02 1.12 16 36 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.41 5.05 7.68 -92.71 -0.71 4.34 16 39 H 0.12 4.12 8.06 -2.91 -0.02 4.10 16 40 H 0.42 -0.84 7.74 -92.71 -0.72 -1.55 16 41 H 0.41 2.57 8.93 -92.71 -0.83 1.74 16 42 H 0.25 -1.96 7.44 -2.91 -0.02 -1.98 16 43 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 44 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -97.55 364.64 -1.66 -99.21 By element: Atomic # 1 Polarization: 25.52 SS G_CDS: -2.48 Total: 23.04 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: 4.94 Total: 6.08 kcal Atomic # 7 Polarization: -126.20 SS G_CDS: -6.01 Total: -132.20 kcal Atomic # 8 Polarization: -45.53 SS G_CDS: -0.14 Total: -45.68 kcal Atomic # 14 Polarization: 47.52 SS G_CDS: 2.03 Total: 49.54 kcal Total: -97.55 -1.66 -99.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981422531.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.889 kcal (2) G-P(sol) polarization free energy of solvation -97.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds