Wall clock time and date at job start Tue Mar 31 2020 12:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00150 * 2 1 4 4 H 1.48497 * 109.47271 * 270.00283 * 3 2 1 5 5 H 1.48505 * 109.47104 * 30.00375 * 3 2 1 6 6 H 1.48499 * 109.46997 * 149.99962 * 3 2 1 7 7 C 1.38808 * 119.99583 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00527 * 359.97438 * 7 2 1 9 9 N 1.36943 * 119.99595 * 180.02562 * 7 2 1 10 10 C 1.46503 * 119.99605 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.47338 * 34.99618 * 10 9 7 12 12 C 1.53003 * 109.46967 * 274.99079 * 10 9 7 13 13 C 1.53003 * 109.46811 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.46860 * 60.01012 * 13 12 10 15 15 C 1.52999 * 109.47188 * 299.99296 * 14 13 12 16 16 H 1.08999 * 109.47091 * 300.00470 * 15 14 13 17 17 N 1.46499 * 109.47341 * 180.02562 * 15 14 13 18 18 C 1.34777 * 119.99665 * 85.27876 * 17 15 14 19 19 O 1.21673 * 120.00212 * 359.72109 * 18 17 15 20 20 C 1.46810 * 119.99553 * 179.72435 * 18 17 15 21 21 C 1.36351 * 125.84692 * 179.97438 * 20 18 17 22 22 C 1.41306 * 107.01435 * 180.02562 * 21 20 18 23 23 C 1.47386 * 126.46882 * 180.02562 * 22 21 20 24 24 N 1.34769 * 120.00348 * 180.02562 * 23 22 21 25 25 O 1.21614 * 119.99721 * 359.97438 * 23 22 21 26 26 C 1.38215 * 107.06876 * 359.97438 * 22 21 20 27 27 N 1.34255 * 108.40001 * 359.73114 * 26 22 21 28 28 H 0.97001 * 125.39737 * 180.25480 * 27 26 22 29 29 C 1.53001 * 109.46944 * 60.00112 * 15 14 13 30 30 H 0.97003 * 119.99576 * 359.97438 * 1 2 3 31 31 H 0.96995 * 120.00160 * 359.97438 * 9 7 2 32 32 H 1.09005 * 109.46473 * 60.00406 * 12 10 9 33 33 H 1.08999 * 109.47531 * 300.00421 * 12 10 9 34 34 H 1.08993 * 109.47787 * 300.00199 * 13 12 10 35 35 H 1.09002 * 109.46570 * 179.97438 * 13 12 10 36 36 H 1.09001 * 109.47132 * 179.97438 * 14 13 12 37 37 H 1.08999 * 109.47488 * 59.99523 * 14 13 12 38 38 H 0.97001 * 119.99790 * 264.99588 * 17 15 14 39 39 H 1.08003 * 126.49626 * 0.02562 * 21 20 18 40 40 H 0.97006 * 120.00127 * 0.02562 * 24 23 22 41 41 H 0.96998 * 120.00185 * 179.97438 * 24 23 22 42 42 H 1.08005 * 125.79920 * 180.02562 * 26 22 21 43 43 H 1.08999 * 109.46935 * 60.00262 * 29 15 14 44 44 H 1.09004 * 109.47138 * 180.02562 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0101 -1.2022 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1120 -2.4710 -0.0011 11 1 3.5648 -3.2059 -0.5915 12 6 4.2577 -2.9770 1.4354 13 6 5.0221 -4.3024 1.4341 14 6 6.4095 -4.0903 0.8251 15 6 6.2639 -3.5843 -0.6114 16 1 5.7164 -4.3190 -1.2017 17 7 7.5924 -3.3818 -1.1949 18 6 8.2415 -4.4150 -1.7674 19 8 7.7264 -5.5169 -1.7951 20 6 9.5702 -4.2107 -2.3574 21 6 10.3303 -5.1667 -2.9635 22 6 11.5256 -4.5403 -3.3828 23 6 12.6505 -5.1817 -4.0866 24 7 13.7343 -4.4564 -4.4266 25 8 12.6012 -6.3658 -4.3597 26 6 11.4402 -3.2123 -3.0094 27 7 10.2601 -3.0187 -2.3991 28 1 9.9445 -2.1742 -2.0412 29 6 5.4995 -2.2590 -0.6102 30 1 -0.4850 0.8401 0.0004 31 1 3.8646 -0.3622 0.0004 32 1 3.2692 -3.1284 1.8692 33 1 4.8049 -2.2421 2.0258 34 1 4.4745 -5.0371 0.8439 35 1 5.1263 -4.6626 2.4576 36 1 6.9542 -5.0345 0.8246 37 1 6.9571 -3.3556 1.4154 38 1 8.0030 -2.5033 -1.1728 39 1 10.0685 -6.2059 -3.0978 40 1 13.7741 -3.5121 -4.2079 41 1 14.4748 -4.8786 -4.8895 42 1 12.1927 -2.4574 -3.1836 43 1 6.0471 -1.5242 -0.0200 44 1 5.3954 -1.8986 -1.6337 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981422532.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:23 Heat of formation + Delta-G solvation = -64.923410 kcal Electronic energy + Delta-G solvation = -26105.575655 eV Core-core repulsion = 22249.562912 eV Total energy + Delta-G solvation = -3856.012743 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.62473 -40.85546 -39.83046 -39.16070 -36.39582 -34.95216 -34.63249 -33.28629 -32.31612 -31.33281 -30.32158 -29.40816 -25.47929 -24.74416 -24.13156 -23.25198 -22.15614 -21.38102 -21.13147 -20.58983 -20.16918 -19.37845 -17.91304 -17.44617 -17.23778 -16.88962 -16.47531 -16.41168 -15.91905 -15.67528 -15.41887 -15.15493 -15.04723 -14.93950 -14.68503 -14.59866 -14.45296 -14.31399 -13.75478 -13.53579 -13.35478 -13.03223 -12.88020 -12.36816 -12.21146 -12.05376 -11.80215 -11.69559 -11.64538 -11.45885 -11.23983 -11.07487 -10.91471 -10.62727 -10.25306 -10.15381 -9.40357 -9.30479 -8.00303 -5.34571 0.38175 0.77482 1.38057 1.43955 1.51339 1.88935 2.04606 2.17534 2.50721 2.57432 2.78440 3.30245 3.44095 3.73684 3.82680 3.89693 4.00115 4.08410 4.10987 4.25924 4.29143 4.36139 4.49644 4.54872 4.62953 4.74375 4.80711 4.89109 4.94769 5.08667 5.13276 5.18771 5.33025 5.34324 5.38009 5.48820 5.54352 5.61101 5.79561 5.99018 6.23256 6.32201 6.49211 6.62595 7.09558 7.10038 7.47332 7.84651 8.05987 9.21408 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.022153 B = 0.002337 C = 0.002192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.648301 B =11980.214789 C =12772.110625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.987 5.987 2 C -0.071 4.071 3 Si 0.962 3.038 4 H -0.278 1.278 5 H -0.301 1.301 6 H -0.244 1.244 7 C -0.229 4.229 8 H 0.050 0.950 9 N -0.748 5.748 10 C 0.179 3.821 11 H 0.033 0.967 12 C -0.128 4.128 13 C -0.109 4.109 14 C -0.116 4.116 15 C 0.157 3.843 16 H 0.066 0.934 17 N -0.706 5.706 18 C 0.587 3.413 19 O -0.573 6.573 20 C -0.068 4.068 21 C -0.072 4.072 22 C -0.271 4.271 23 C 0.589 3.411 24 N -0.829 5.829 25 O -0.608 6.608 26 C 0.126 3.874 27 N -0.502 5.502 28 H 0.443 0.557 29 C -0.118 4.118 30 H 0.257 0.743 31 H 0.368 0.632 32 H 0.035 0.965 33 H 0.066 0.934 34 H 0.051 0.949 35 H 0.076 0.924 36 H 0.058 0.942 37 H 0.083 0.917 38 H 0.412 0.588 39 H 0.125 0.875 40 H 0.419 0.581 41 H 0.410 0.590 42 H 0.244 0.756 43 H 0.091 0.909 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.045 0.827 -3.805 33.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.638 5.638 2 C -0.262 4.262 3 Si 0.789 3.211 4 H -0.204 1.204 5 H -0.228 1.228 6 H -0.168 1.168 7 C -0.360 4.360 8 H 0.068 0.932 9 N -0.391 5.391 10 C 0.070 3.930 11 H 0.051 0.949 12 C -0.168 4.168 13 C -0.147 4.147 14 C -0.154 4.154 15 C 0.052 3.948 16 H 0.084 0.916 17 N -0.356 5.356 18 C 0.375 3.625 19 O -0.452 6.452 20 C -0.179 4.179 21 C -0.099 4.099 22 C -0.280 4.280 23 C 0.377 3.623 24 N -0.392 5.392 25 O -0.491 6.491 26 C -0.018 4.018 27 N -0.099 5.099 28 H 0.285 0.715 29 C -0.156 4.156 30 H 0.065 0.935 31 H 0.202 0.798 32 H 0.054 0.946 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.094 0.906 36 H 0.077 0.923 37 H 0.102 0.898 38 H 0.249 0.751 39 H 0.143 0.857 40 H 0.251 0.749 41 H 0.242 0.758 42 H 0.260 0.740 43 H 0.109 0.891 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 32.126 -0.634 -3.828 32.360 hybrid contribution -0.331 1.432 0.033 1.470 sum 31.795 0.798 -3.795 32.031 Atomic orbital electron populations 1.69914 1.07393 1.26660 1.59840 1.25610 0.96191 1.01660 1.02756 0.85310 0.78786 0.78966 0.78065 1.20401 1.22763 1.16768 1.18986 0.82795 0.93184 1.41031 0.93220 1.42686 1.02236 1.03831 1.90361 1.20276 0.91129 0.87023 0.94531 0.94897 1.22087 0.99222 0.97076 0.98406 1.21415 0.95262 0.96758 1.01306 1.21814 0.97274 1.01513 0.94835 1.20782 0.82294 0.97294 0.94405 0.91558 1.45718 1.18943 1.12176 1.58804 1.17326 0.83658 0.84320 0.77208 1.90856 1.67990 1.26033 1.60321 1.19626 0.95708 0.87980 1.14607 1.21061 0.93221 0.98764 0.96850 1.19589 0.97791 0.95604 1.15039 1.17628 0.82525 0.85164 0.77027 1.43421 1.19304 1.14757 1.61744 1.90813 1.82005 1.18310 1.57940 1.23208 0.88807 0.96452 0.93329 1.41701 1.14442 1.10016 1.43692 0.71500 1.21926 0.94992 0.96600 1.02105 0.93468 0.79848 0.94573 0.91518 0.92987 0.90585 0.92350 0.89846 0.75110 0.85706 0.74907 0.75806 0.74033 0.89052 0.91039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.12 13.97 21.65 0.30 -62.82 16 2 C -0.07 -4.13 5.50 84.86 0.47 -3.67 16 3 Si 0.96 43.60 27.74 68.60 1.90 45.51 16 4 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 5 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 6 H -0.24 -9.53 6.52 99.48 0.65 -8.89 16 7 C -0.23 -12.80 10.41 84.03 0.87 -11.92 16 8 H 0.05 3.12 8.06 -2.91 -0.02 3.09 16 9 N -0.75 -32.74 4.93 -322.92 -1.59 -34.33 16 10 C 0.18 6.28 2.77 44.99 0.12 6.40 16 11 H 0.03 1.32 8.08 -2.39 -0.02 1.30 16 12 C -0.13 -4.07 5.50 30.60 0.17 -3.90 16 13 C -0.11 -2.80 5.92 30.59 0.18 -2.62 16 14 C -0.12 -2.57 5.50 30.59 0.17 -2.41 16 15 C 0.16 3.64 2.46 44.99 0.11 3.75 16 16 H 0.07 1.95 7.57 -2.39 -0.02 1.93 16 17 N -0.71 -12.22 5.07 -446.38 -2.26 -14.49 16 18 C 0.59 13.66 7.76 86.48 0.67 14.33 16 19 O -0.57 -19.26 16.52 -4.26 -0.07 -19.33 16 20 C -0.07 -1.20 6.99 40.01 0.28 -0.92 16 21 C -0.07 -1.62 10.37 22.58 0.23 -1.39 16 22 C -0.27 -4.08 6.13 -20.12 -0.12 -4.20 16 23 C 0.59 10.41 8.09 86.65 0.70 11.11 16 24 N -0.83 -4.63 8.86 -175.92 -1.56 -6.19 16 25 O -0.61 -18.07 17.76 -4.07 -0.07 -18.14 16 26 C 0.13 0.45 11.43 84.32 0.96 1.41 16 27 N -0.50 -2.83 5.91 -183.34 -1.08 -3.92 16 28 H 0.44 -0.92 8.14 -92.71 -0.75 -1.68 16 29 C -0.12 -2.89 4.86 30.60 0.15 -2.74 16 30 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 31 H 0.37 14.88 5.66 -92.71 -0.52 14.35 16 32 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 33 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.41 3.62 7.68 -92.71 -0.71 2.91 16 39 H 0.12 3.55 8.06 -2.91 -0.02 3.52 16 40 H 0.42 -1.47 7.74 -92.70 -0.72 -2.19 16 41 H 0.41 1.82 8.93 -92.71 -0.83 0.99 16 42 H 0.24 -2.23 7.44 -2.91 -0.02 -2.25 16 43 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 Total: -1.00 -92.54 365.96 -1.97 -94.51 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: -2.51 Total: 15.97 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: 4.97 Total: 3.22 kcal Atomic # 7 Polarization: -115.54 SS G_CDS: -6.20 Total: -121.74 kcal Atomic # 8 Polarization: -37.33 SS G_CDS: -0.14 Total: -37.47 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 1.90 Total: 45.51 kcal Total: -92.54 -1.97 -94.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981422532.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.588 kcal (2) G-P(sol) polarization free energy of solvation -92.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds