Wall clock time and date at job start Tue Mar 31 2020 12:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86807 * 120.00040 * 2 1 4 4 H 1.48499 * 109.46973 * 240.00202 * 3 2 1 5 5 H 1.48507 * 109.46810 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47331 * 119.99429 * 3 2 1 7 7 C 1.38807 * 120.00423 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00692 * 179.97438 * 7 2 1 9 9 N 1.36943 * 119.99739 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99773 * 179.97438 * 9 7 2 11 11 H 1.09005 * 109.47201 * 324.99537 * 10 9 7 12 12 C 1.52996 * 109.47433 * 84.99989 * 10 9 7 13 13 C 1.53001 * 109.47264 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.46876 * 299.99762 * 13 12 10 15 15 C 1.52999 * 109.46992 * 60.00448 * 14 13 12 16 16 H 1.08999 * 109.47091 * 179.97438 * 15 14 13 17 17 N 1.46499 * 109.47341 * 59.99623 * 15 14 13 18 18 C 1.34777 * 119.99665 * 85.27876 * 17 15 14 19 19 O 1.21673 * 120.00212 * 359.72109 * 18 17 15 20 20 C 1.46810 * 119.99553 * 179.72435 * 18 17 15 21 21 C 1.36356 * 125.84586 * 179.71097 * 20 18 17 22 22 C 1.41308 * 107.01133 * 179.90611 * 21 20 18 23 23 C 1.47387 * 126.46706 * 180.13102 * 22 21 20 24 24 N 1.34769 * 120.00337 * 180.23623 * 23 22 21 25 25 O 1.21614 * 119.99738 * 0.24342 * 23 22 21 26 26 C 1.38210 * 107.07346 * 0.35694 * 22 21 20 27 27 N 1.34271 * 108.39729 * 359.78055 * 26 22 21 28 28 H 0.96995 * 125.38929 * 179.97438 * 27 26 22 29 29 C 1.53001 * 109.46944 * 299.99510 * 15 14 13 30 30 H 0.96998 * 120.00399 * 0.02562 * 1 2 3 31 31 H 0.96995 * 120.00233 * 359.97438 * 9 7 2 32 32 H 1.09005 * 109.46772 * 59.99649 * 12 10 9 33 33 H 1.08999 * 109.47079 * 299.99758 * 12 10 9 34 34 H 1.08995 * 109.47084 * 180.02562 * 13 12 10 35 35 H 1.08996 * 109.46985 * 59.99762 * 13 12 10 36 36 H 1.08996 * 109.47611 * 300.00258 * 14 13 12 37 37 H 1.09001 * 109.46951 * 179.97438 * 14 13 12 38 38 H 0.97001 * 119.99790 * 264.99588 * 17 15 14 39 39 H 1.07995 * 126.49445 * 0.02562 * 21 20 18 40 40 H 0.97007 * 120.00121 * 0.02562 * 24 23 22 41 41 H 0.97008 * 120.00216 * 179.97438 * 24 23 22 42 42 H 1.08005 * 125.80256 * 179.79963 * 26 22 21 43 43 H 1.09004 * 109.47138 * 180.02562 * 29 15 14 44 44 H 1.09005 * 109.47453 * 300.00041 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 2.9689 -3.5504 -0.5890 12 6 2.4222 -4.0356 1.4375 13 6 3.1867 -5.3609 1.4375 14 6 2.3090 -6.4559 0.8281 15 6 1.9451 -6.0771 -0.6089 16 1 1.3202 -6.8575 -1.0432 17 7 3.1690 -5.9348 -1.4013 18 6 3.7319 -7.0183 -1.9721 19 8 3.2264 -8.1152 -1.8252 20 6 4.9551 -6.8747 -2.7712 21 6 5.6249 -7.8857 -3.3946 22 6 6.7361 -7.3052 -4.0465 23 6 7.7472 -8.0129 -4.8521 24 7 8.7617 -7.3268 -5.4146 25 8 7.6659 -9.2161 -5.0095 26 6 6.6990 -5.9492 -3.7818 27 7 5.6262 -5.6964 -3.0148 28 1 5.3654 -4.8226 -2.6843 29 6 1.1806 -4.7518 -0.6089 30 1 -0.4850 0.8400 -0.0004 31 1 0.3557 -2.3881 0.0005 32 1 1.5114 -4.1418 2.0269 33 1 3.0471 -3.2552 1.8718 34 1 3.4455 -5.6310 2.4612 35 1 4.0973 -5.2550 0.8479 36 1 1.3983 -6.5618 1.4176 37 1 2.8538 -7.4000 0.8277 38 1 3.5720 -5.0603 -1.5185 39 1 5.3559 -8.9317 -3.3922 40 1 8.8267 -6.3671 -5.2889 41 1 9.4273 -7.7927 -5.9446 42 1 7.4115 -5.2172 -4.1326 43 1 0.9209 -4.4821 -1.6326 44 1 0.2698 -4.8577 -0.0193 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981422533.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:27 Heat of formation + Delta-G solvation = -34.705273 kcal Electronic energy + Delta-G solvation = -26684.582349 eV Core-core repulsion = 22829.879963 eV Total energy + Delta-G solvation = -3854.702387 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.85606 -39.92425 -38.98916 -37.84779 -34.61344 -33.93596 -33.22462 -31.53722 -31.26155 -30.36101 -29.04240 -27.93763 -24.04988 -23.71625 -23.27884 -22.10938 -21.15105 -20.54057 -19.98091 -19.33999 -18.89564 -17.38632 -17.10528 -16.57470 -16.13271 -15.66249 -15.47273 -15.28859 -14.78211 -14.51114 -14.24987 -14.10562 -13.88327 -13.55288 -13.54000 -13.51522 -13.13927 -12.66204 -12.53594 -12.15855 -11.95403 -11.82361 -11.10104 -10.97266 -10.88446 -10.48244 -10.35607 -10.32318 -10.28607 -10.13317 -9.95019 -9.86096 -9.62789 -9.42617 -9.12156 -8.97201 -8.64539 -7.08470 -5.88070 -3.17782 1.16909 1.57802 2.63675 3.01528 3.12534 3.33129 3.37931 3.39180 3.40158 3.41172 4.45465 4.46722 4.57638 4.68090 4.89787 5.00141 5.01334 5.08591 5.38825 5.48254 5.51250 5.59123 5.65724 5.68468 5.77428 5.88340 5.96447 6.00409 6.11066 6.15645 6.20704 6.37363 6.40060 6.47610 6.52954 6.54533 6.61613 6.82140 6.85722 6.97589 7.11439 7.43530 7.55226 8.08997 8.09812 8.30017 9.41171 9.98420 10.32722 11.34242 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013746 B = 0.002999 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.534458 B = 9335.529926 C =10836.886918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.011 4.011 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.243 4.243 8 H 0.068 0.932 9 N -0.724 5.724 10 C 0.183 3.817 11 H 0.036 0.964 12 C -0.138 4.138 13 C -0.115 4.115 14 C -0.128 4.128 15 C 0.153 3.847 16 H 0.088 0.912 17 N -0.717 5.717 18 C 0.587 3.413 19 O -0.529 6.529 20 C -0.055 4.055 21 C -0.046 4.046 22 C -0.241 4.241 23 C 0.595 3.405 24 N -0.856 5.856 25 O -0.546 6.546 26 C 0.073 3.927 27 N -0.521 5.521 28 H 0.425 0.575 29 C -0.135 4.135 30 H 0.257 0.743 31 H 0.385 0.615 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.054 0.946 35 H 0.052 0.948 36 H 0.072 0.928 37 H 0.062 0.938 38 H 0.396 0.604 39 H 0.158 0.842 40 H 0.398 0.602 41 H 0.403 0.597 42 H 0.181 0.819 43 H 0.069 0.931 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.939 -10.630 -6.306 18.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.207 4.207 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.213 1.213 7 C -0.375 4.375 8 H 0.086 0.914 9 N -0.365 5.365 10 C 0.072 3.928 11 H 0.054 0.946 12 C -0.178 4.178 13 C -0.153 4.153 14 C -0.167 4.167 15 C 0.048 3.952 16 H 0.106 0.894 17 N -0.368 5.368 18 C 0.374 3.626 19 O -0.405 6.405 20 C -0.166 4.166 21 C -0.072 4.072 22 C -0.251 4.251 23 C 0.382 3.618 24 N -0.420 5.420 25 O -0.423 6.423 26 C -0.069 4.069 27 N -0.116 5.116 28 H 0.263 0.737 29 C -0.174 4.174 30 H 0.067 0.933 31 H 0.218 0.782 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.231 0.769 39 H 0.176 0.824 40 H 0.226 0.774 41 H 0.234 0.766 42 H 0.198 0.802 43 H 0.088 0.912 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 13.310 -11.913 -6.095 18.873 hybrid contribution 0.652 2.346 0.016 2.435 sum 13.962 -9.567 -6.078 17.983 Atomic orbital electron populations 1.69640 1.05119 1.25915 1.57147 1.24747 0.95494 0.97700 1.02796 0.86299 0.78573 0.83676 0.77771 1.21325 1.21638 1.21258 1.19133 0.90810 0.84125 1.43384 0.91385 1.42415 1.05818 0.99618 1.88629 1.20115 0.93658 0.86069 0.92912 0.94572 1.22302 0.99909 0.95167 1.00440 1.21499 0.98316 0.95647 0.99828 1.21910 1.00728 0.98684 0.95363 1.21007 0.84748 0.98571 0.90855 0.89418 1.46097 1.28565 1.09700 1.52481 1.17034 0.82232 0.84832 0.78544 1.90844 1.62654 1.25544 1.61466 1.20243 0.99518 0.85974 1.10841 1.21075 0.92317 0.99120 0.94682 1.19570 1.01864 0.92857 1.10836 1.17394 0.80276 0.86265 0.77877 1.43685 1.29652 1.12297 1.56323 1.90832 1.75778 1.14348 1.61384 1.22416 0.91660 0.96694 0.96150 1.41835 1.20836 1.09853 1.39026 0.73680 1.22152 0.99409 0.93470 1.02323 0.93340 0.78173 0.92404 0.92082 0.92729 0.92902 0.90920 0.91885 0.76869 0.82389 0.77381 0.76633 0.80205 0.91186 0.90262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.86 13.06 55.49 0.72 -26.14 16 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 3 Si 0.91 21.16 29.55 -169.99 -5.02 16.14 16 4 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 7 C -0.24 -6.24 9.93 -15.06 -0.15 -6.39 16 8 H 0.07 1.67 7.83 -52.49 -0.41 1.26 16 9 N -0.72 -16.53 5.12 -53.42 -0.27 -16.81 16 10 C 0.18 3.13 2.60 -67.93 -0.18 2.95 16 11 H 0.04 0.60 6.45 -51.93 -0.33 0.26 16 12 C -0.14 -2.21 5.50 -26.73 -0.15 -2.36 16 13 C -0.11 -1.50 5.77 -26.73 -0.15 -1.65 16 14 C -0.13 -1.62 5.61 -26.73 -0.15 -1.77 16 15 C 0.15 1.98 2.79 -67.93 -0.19 1.79 16 16 H 0.09 1.20 7.57 -51.93 -0.39 0.80 16 17 N -0.72 -8.54 4.23 -55.07 -0.23 -8.77 16 18 C 0.59 7.81 7.76 -12.79 -0.10 7.72 16 19 O -0.53 -8.82 16.52 5.21 0.09 -8.73 16 20 C -0.05 -0.61 6.99 -82.40 -0.58 -1.19 16 21 C -0.05 -0.56 10.37 -39.09 -0.41 -0.97 16 22 C -0.24 -2.39 6.13 -105.02 -0.64 -3.03 16 23 C 0.59 6.26 8.09 -12.54 -0.10 6.16 16 24 N -0.86 -4.75 8.86 30.42 0.27 -4.48 16 25 O -0.55 -8.25 17.76 5.27 0.09 -8.16 16 26 C 0.07 0.47 11.43 -16.50 -0.19 0.28 16 27 N -0.52 -3.93 5.91 -9.30 -0.05 -3.98 16 28 H 0.42 2.28 8.14 -40.82 -0.33 1.95 16 29 C -0.13 -1.97 5.07 -26.73 -0.14 -2.10 16 30 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 31 H 0.38 9.53 7.80 -40.82 -0.32 9.21 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.05 0.66 7.60 -51.93 -0.39 0.27 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.40 4.17 5.95 -40.82 -0.24 3.93 16 39 H 0.16 2.10 8.06 -52.49 -0.42 1.67 16 40 H 0.40 0.88 7.74 -40.82 -0.32 0.57 16 41 H 0.40 1.83 8.93 -40.82 -0.36 1.46 16 42 H 0.18 0.32 7.44 -52.48 -0.39 -0.07 16 43 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 364.64 15.07 5.50 5.50 Total: -1.00 -35.18 364.64 -8.14 -43.32 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: -6.01 Total: 13.08 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: -3.21 Total: -0.96 kcal Atomic # 7 Polarization: -60.61 SS G_CDS: 0.43 Total: -60.18 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: 0.18 Total: -16.89 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.18 -8.14 -43.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981422533.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.613 kcal (2) G-P(sol) polarization free energy of solvation -35.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds