Wall clock time and date at job start Tue Mar 31 2020 12:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86807 * 120.00040 * 2 1 4 4 H 1.48499 * 109.46973 * 240.00202 * 3 2 1 5 5 H 1.48507 * 109.46810 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47331 * 119.99429 * 3 2 1 7 7 C 1.38807 * 120.00423 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00692 * 179.97438 * 7 2 1 9 9 N 1.36943 * 119.99739 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99773 * 179.97438 * 9 7 2 11 11 H 1.09005 * 109.47201 * 324.99537 * 10 9 7 12 12 C 1.52996 * 109.47433 * 84.99989 * 10 9 7 13 13 C 1.53001 * 109.47264 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.46876 * 299.99762 * 13 12 10 15 15 C 1.52999 * 109.46992 * 60.00448 * 14 13 12 16 16 H 1.08999 * 109.47091 * 179.97438 * 15 14 13 17 17 N 1.46499 * 109.47341 * 59.99623 * 15 14 13 18 18 C 1.34777 * 119.99665 * 85.27876 * 17 15 14 19 19 O 1.21673 * 120.00212 * 359.72109 * 18 17 15 20 20 C 1.46810 * 119.99553 * 179.72435 * 18 17 15 21 21 C 1.36356 * 125.84586 * 179.71097 * 20 18 17 22 22 C 1.41308 * 107.01133 * 179.90611 * 21 20 18 23 23 C 1.47387 * 126.46706 * 180.13102 * 22 21 20 24 24 N 1.34769 * 120.00337 * 180.23623 * 23 22 21 25 25 O 1.21614 * 119.99738 * 0.24342 * 23 22 21 26 26 C 1.38210 * 107.07346 * 0.35694 * 22 21 20 27 27 N 1.34271 * 108.39729 * 359.78055 * 26 22 21 28 28 H 0.96995 * 125.38929 * 179.97438 * 27 26 22 29 29 C 1.53001 * 109.46944 * 299.99510 * 15 14 13 30 30 H 0.96998 * 120.00399 * 0.02562 * 1 2 3 31 31 H 0.96995 * 120.00233 * 359.97438 * 9 7 2 32 32 H 1.09005 * 109.46772 * 59.99649 * 12 10 9 33 33 H 1.08999 * 109.47079 * 299.99758 * 12 10 9 34 34 H 1.08995 * 109.47084 * 180.02562 * 13 12 10 35 35 H 1.08996 * 109.46985 * 59.99762 * 13 12 10 36 36 H 1.08996 * 109.47611 * 300.00258 * 14 13 12 37 37 H 1.09001 * 109.46951 * 179.97438 * 14 13 12 38 38 H 0.97001 * 119.99790 * 264.99588 * 17 15 14 39 39 H 1.07995 * 126.49445 * 0.02562 * 21 20 18 40 40 H 0.97007 * 120.00121 * 0.02562 * 24 23 22 41 41 H 0.97008 * 120.00216 * 179.97438 * 24 23 22 42 42 H 1.08005 * 125.80256 * 179.79963 * 26 22 21 43 43 H 1.09004 * 109.47138 * 180.02562 * 29 15 14 44 44 H 1.09005 * 109.47453 * 300.00041 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 2.9689 -3.5504 -0.5890 12 6 2.4222 -4.0356 1.4375 13 6 3.1867 -5.3609 1.4375 14 6 2.3090 -6.4559 0.8281 15 6 1.9451 -6.0771 -0.6089 16 1 1.3202 -6.8575 -1.0432 17 7 3.1690 -5.9348 -1.4013 18 6 3.7319 -7.0183 -1.9721 19 8 3.2264 -8.1152 -1.8252 20 6 4.9551 -6.8747 -2.7712 21 6 5.6249 -7.8857 -3.3946 22 6 6.7361 -7.3052 -4.0465 23 6 7.7472 -8.0129 -4.8521 24 7 8.7617 -7.3268 -5.4146 25 8 7.6659 -9.2161 -5.0095 26 6 6.6990 -5.9492 -3.7818 27 7 5.6262 -5.6964 -3.0148 28 1 5.3654 -4.8226 -2.6843 29 6 1.1806 -4.7518 -0.6089 30 1 -0.4850 0.8400 -0.0004 31 1 0.3557 -2.3881 0.0005 32 1 1.5114 -4.1418 2.0269 33 1 3.0471 -3.2552 1.8718 34 1 3.4455 -5.6310 2.4612 35 1 4.0973 -5.2550 0.8479 36 1 1.3983 -6.5618 1.4176 37 1 2.8538 -7.4000 0.8277 38 1 3.5720 -5.0603 -1.5185 39 1 5.3559 -8.9317 -3.3922 40 1 8.8267 -6.3671 -5.2889 41 1 9.4273 -7.7927 -5.9446 42 1 7.4115 -5.2172 -4.1326 43 1 0.9209 -4.4821 -1.6326 44 1 0.2698 -4.8577 -0.0193 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981422533.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:26 Heat of formation + Delta-G solvation = -63.142863 kcal Electronic energy + Delta-G solvation = -26685.815496 eV Core-core repulsion = 22829.879963 eV Total energy + Delta-G solvation = -3855.935533 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.62824 -40.99722 -39.83020 -39.04769 -36.16874 -34.68678 -34.50718 -32.94560 -32.28510 -31.39609 -30.07363 -29.39499 -25.69954 -24.74336 -24.11020 -23.26504 -22.49539 -21.40010 -20.78835 -20.17807 -20.07090 -19.08888 -17.88400 -17.34693 -17.13645 -16.75854 -16.56916 -16.40215 -16.12578 -15.69556 -15.37460 -15.11446 -15.04816 -14.87034 -14.64628 -14.51410 -14.38332 -13.87699 -13.52930 -13.39632 -13.10700 -13.04043 -12.87567 -12.74725 -12.26080 -12.08668 -11.94627 -11.60667 -11.47870 -11.30955 -11.16207 -11.01579 -10.82560 -10.62532 -10.22376 -10.13434 -9.39702 -8.97498 -7.90749 -5.18943 0.39847 0.77727 1.49783 1.52094 1.58017 1.94958 2.07754 2.19492 2.57730 2.58584 2.79014 3.42931 3.61906 3.81092 3.87124 3.90448 3.91702 4.07270 4.25533 4.28827 4.31962 4.34830 4.54206 4.65887 4.71096 4.77345 4.82135 4.89096 4.94069 5.09508 5.16725 5.22165 5.34615 5.37817 5.42923 5.50630 5.55015 5.57259 5.66279 5.99104 6.28672 6.30805 6.47417 6.61379 7.08599 7.37321 7.46687 8.14125 8.35867 9.32642 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.013746 B = 0.002999 C = 0.002583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.534458 B = 9335.529926 C =10836.886918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.078 4.078 3 Si 0.968 3.032 4 H -0.274 1.274 5 H -0.303 1.303 6 H -0.280 1.280 7 C -0.233 4.233 8 H 0.081 0.919 9 N -0.737 5.737 10 C 0.179 3.821 11 H 0.050 0.950 12 C -0.129 4.129 13 C -0.103 4.103 14 C -0.123 4.123 15 C 0.160 3.840 16 H 0.083 0.917 17 N -0.707 5.707 18 C 0.588 3.412 19 O -0.570 6.570 20 C -0.071 4.071 21 C -0.068 4.068 22 C -0.268 4.268 23 C 0.591 3.409 24 N -0.829 5.829 25 O -0.606 6.606 26 C 0.121 3.879 27 N -0.508 5.508 28 H 0.439 0.561 29 C -0.122 4.122 30 H 0.248 0.752 31 H 0.371 0.629 32 H 0.046 0.954 33 H 0.043 0.957 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.079 0.921 37 H 0.061 0.939 38 H 0.405 0.595 39 H 0.131 0.869 40 H 0.418 0.582 41 H 0.411 0.589 42 H 0.240 0.760 43 H 0.064 0.936 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.697 -9.207 -6.786 20.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.270 4.270 3 Si 0.798 3.202 4 H -0.200 1.200 5 H -0.230 1.230 6 H -0.207 1.207 7 C -0.365 4.365 8 H 0.099 0.901 9 N -0.377 5.377 10 C 0.071 3.929 11 H 0.068 0.932 12 C -0.169 4.169 13 C -0.142 4.142 14 C -0.162 4.162 15 C 0.055 3.945 16 H 0.101 0.899 17 N -0.358 5.358 18 C 0.377 3.623 19 O -0.450 6.450 20 C -0.182 4.182 21 C -0.095 4.095 22 C -0.278 4.278 23 C 0.379 3.621 24 N -0.393 5.393 25 O -0.488 6.488 26 C -0.023 4.023 27 N -0.103 5.103 28 H 0.280 0.720 29 C -0.161 4.161 30 H 0.057 0.943 31 H 0.203 0.797 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.079 0.921 38 H 0.242 0.758 39 H 0.148 0.852 40 H 0.250 0.750 41 H 0.242 0.758 42 H 0.256 0.744 43 H 0.082 0.918 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 16.143 -10.442 -6.575 20.319 hybrid contribution -0.127 1.865 0.138 1.875 sum 16.016 -8.577 -6.436 19.274 Atomic orbital electron populations 1.69807 1.06690 1.25908 1.59841 1.25519 0.96225 1.01010 1.04221 0.85293 0.77177 0.79542 0.78232 1.19950 1.23024 1.20650 1.19581 0.91512 0.84998 1.40411 0.90103 1.42651 1.05450 1.00959 1.88594 1.20355 0.94025 0.84537 0.93985 0.93164 1.22130 0.99478 0.96326 0.98957 1.21400 0.98142 0.93730 1.00899 1.21866 1.00990 0.98374 0.94964 1.20858 0.85006 0.97252 0.91388 0.89932 1.45946 1.28033 1.09878 1.51979 1.17263 0.82553 0.84282 0.78219 1.90820 1.64026 1.27103 1.63038 1.19754 0.99426 0.87300 1.11693 1.21044 0.93966 0.98467 0.95977 1.19582 1.01679 0.94472 1.12043 1.17570 0.81061 0.85651 0.77842 1.43434 1.28011 1.13256 1.54596 1.90803 1.77354 1.16918 1.63766 1.23209 0.90581 0.96041 0.92486 1.41804 1.20531 1.09345 1.38654 0.71974 1.21987 0.99115 0.93333 1.01654 0.94280 0.79743 0.93534 0.93767 0.91519 0.91863 0.90283 0.92055 0.75820 0.85153 0.74995 0.75756 0.74414 0.91751 0.90441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -56.89 13.06 21.65 0.28 -56.61 16 2 C -0.08 -4.17 5.50 84.86 0.47 -3.71 16 3 Si 0.97 43.07 29.55 68.60 2.03 45.09 16 4 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 5 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 6 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 7 C -0.23 -11.68 9.93 84.03 0.83 -10.85 16 8 H 0.08 3.77 7.83 -2.91 -0.02 3.75 16 9 N -0.74 -33.24 5.12 -322.93 -1.65 -34.89 16 10 C 0.18 5.86 2.60 44.99 0.12 5.98 16 11 H 0.05 1.52 6.45 -2.38 -0.02 1.50 16 12 C -0.13 -3.93 5.50 30.59 0.17 -3.77 16 13 C -0.10 -2.46 5.77 30.59 0.18 -2.28 16 14 C -0.12 -2.92 5.61 30.59 0.17 -2.75 16 15 C 0.16 3.96 2.79 44.99 0.13 4.08 16 16 H 0.08 2.21 7.57 -2.39 -0.02 2.19 16 17 N -0.71 -15.71 4.23 -446.38 -1.89 -17.60 16 18 C 0.59 15.34 7.76 86.48 0.67 16.01 16 19 O -0.57 -19.44 16.52 -4.26 -0.07 -19.51 16 20 C -0.07 -1.51 6.99 40.01 0.28 -1.23 16 21 C -0.07 -1.68 10.37 22.59 0.23 -1.45 16 22 C -0.27 -4.85 6.13 -20.12 -0.12 -4.97 16 23 C 0.59 11.77 8.09 86.65 0.70 12.47 16 24 N -0.83 -6.79 8.86 -175.92 -1.56 -8.34 16 25 O -0.61 -18.88 17.76 -4.07 -0.07 -18.95 16 26 C 0.12 1.01 11.43 84.31 0.96 1.97 16 27 N -0.51 -5.86 5.91 -183.33 -1.08 -6.94 16 28 H 0.44 2.77 8.14 -92.71 -0.75 2.02 16 29 C -0.12 -3.44 5.07 30.60 0.16 -3.28 16 30 H 0.25 14.32 8.31 -92.71 -0.77 13.54 16 31 H 0.37 18.56 7.80 -92.71 -0.72 17.84 16 32 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 33 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.06 1.39 7.60 -2.39 -0.02 1.37 16 36 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 37 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.40 7.46 5.95 -92.71 -0.55 6.91 16 39 H 0.13 3.84 8.06 -2.91 -0.02 3.82 16 40 H 0.42 -0.10 7.74 -92.70 -0.72 -0.82 16 41 H 0.41 2.71 8.93 -92.70 -0.83 1.88 16 42 H 0.24 -0.92 7.44 -2.91 -0.02 -0.94 16 43 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 44 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 Total: -1.00 -80.49 364.64 -1.56 -82.05 By element: Atomic # 1 Polarization: 31.95 SS G_CDS: -2.48 Total: 29.47 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: 4.94 Total: 6.23 kcal Atomic # 7 Polarization: -118.49 SS G_CDS: -5.90 Total: -124.39 kcal Atomic # 8 Polarization: -38.31 SS G_CDS: -0.14 Total: -38.46 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.09 kcal Total: -80.49 -1.56 -82.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981422533.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.906 kcal (2) G-P(sol) polarization free energy of solvation -80.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds