Wall clock time and date at job start Tue Mar 31 2020 12:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86795 * 120.00054 * 2 1 4 4 H 1.48497 * 109.47113 * 269.99820 * 3 2 1 5 5 H 1.48502 * 109.47056 * 29.99616 * 3 2 1 6 6 H 1.48499 * 109.47499 * 149.99465 * 3 2 1 7 7 C 1.38811 * 120.00098 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99945 * 0.02562 * 7 2 1 9 9 N 1.36940 * 120.00230 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99991 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.47391 * 325.00261 * 10 9 7 12 12 C 1.53000 * 109.46840 * 85.00591 * 10 9 7 13 13 C 1.53001 * 109.46886 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.46963 * 299.99499 * 13 12 10 15 15 C 1.52997 * 109.47092 * 60.00194 * 14 13 12 16 16 H 1.09002 * 109.47497 * 59.99850 * 15 14 13 17 17 N 1.46500 * 109.47204 * 180.02562 * 15 14 13 18 18 C 1.34774 * 119.99914 * 274.99487 * 17 15 14 19 19 O 1.21675 * 120.00111 * 0.02562 * 18 17 15 20 20 C 1.46810 * 120.00001 * 179.97438 * 18 17 15 21 21 C 1.36359 * 125.85010 * 180.02562 * 20 18 17 22 22 C 1.41309 * 107.00801 * 180.02562 * 21 20 18 23 23 C 1.47392 * 126.45819 * 180.02562 * 22 21 20 24 24 N 1.34773 * 120.00101 * 179.97438 * 23 22 21 25 25 O 1.21608 * 119.99686 * 359.97438 * 23 22 21 26 26 C 1.38203 * 107.07554 * 0.02562 * 22 21 20 27 27 N 1.34266 * 108.40140 * 359.73073 * 26 22 21 28 28 H 0.96996 * 125.39594 * 180.26153 * 27 26 22 29 29 C 1.53002 * 109.46799 * 205.00357 * 10 9 7 30 30 H 0.97001 * 120.00026 * 0.02562 * 1 2 3 31 31 H 0.97002 * 119.99599 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.47194 * 299.99493 * 12 10 9 33 33 H 1.08992 * 109.47399 * 59.99666 * 12 10 9 34 34 H 1.09000 * 109.47437 * 180.02562 * 13 12 10 35 35 H 1.09002 * 109.47508 * 59.99571 * 13 12 10 36 36 H 1.09002 * 109.47067 * 300.00341 * 14 13 12 37 37 H 1.09000 * 109.47312 * 180.02562 * 14 13 12 38 38 H 0.96995 * 120.00272 * 95.00347 * 17 15 14 39 39 H 1.07997 * 126.48857 * 0.02562 * 21 20 18 40 40 H 0.97007 * 119.99891 * 0.02562 * 24 23 22 41 41 H 0.96991 * 120.00260 * 179.97438 * 24 23 22 42 42 H 1.08004 * 125.79810 * 179.97438 * 26 22 21 43 43 H 1.09002 * 109.47075 * 299.99543 * 29 10 9 44 44 H 1.08996 * 109.47407 * 60.00500 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0463 -1.4000 5 1 1.4475 2.6526 0.7000 6 1 3.5476 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1121 -2.4709 0.0000 11 1 3.5649 -3.2064 0.5898 12 6 4.2577 -2.9756 -1.4370 13 6 5.0221 -4.3010 -1.4369 14 6 6.4096 -4.0895 -0.8277 15 6 6.2640 -3.5847 0.6093 16 1 5.7164 -4.3199 1.1990 17 7 7.5925 -3.3815 1.1925 18 6 8.2450 -4.4158 1.7591 19 8 7.7309 -5.5183 1.7858 20 6 9.5765 -4.2123 2.3430 21 6 10.3401 -5.1696 2.9430 22 6 11.5366 -4.5432 3.3589 23 6 12.6656 -5.1861 4.0549 24 7 13.7502 -4.4607 4.3926 25 8 12.6185 -6.3710 4.3245 26 6 11.4484 -3.2142 2.9900 27 7 10.2705 -3.0224 2.3748 28 1 9.9567 -2.1792 2.0123 29 6 5.4995 -2.2587 0.6092 30 1 -0.4850 0.8401 -0.0004 31 1 3.8646 -0.3621 -0.0004 32 1 3.2693 -3.1268 -1.8709 33 1 4.8048 -2.2402 -2.0267 34 1 5.1263 -4.6604 -2.4607 35 1 4.4746 -5.0363 -0.8473 36 1 6.9571 -3.3542 -1.4173 37 1 6.9544 -5.0335 -0.8280 38 1 8.0024 -2.5027 1.1710 39 1 10.0798 -6.2093 3.0751 40 1 13.7876 -3.5154 4.1779 41 1 14.4930 -4.8836 4.8509 42 1 12.2010 -2.4592 3.1633 43 1 6.0467 -1.5233 0.0193 44 1 5.3958 -1.8992 1.6329 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981422534.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:30 Heat of formation + Delta-G solvation = -32.039887 kcal Electronic energy + Delta-G solvation = -26104.690191 eV Core-core repulsion = 22250.103384 eV Total energy + Delta-G solvation = -3854.586807 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.00005 -39.88151 -39.07936 -37.97581 -34.95034 -34.04773 -33.52055 -31.70714 -31.40049 -30.41177 -29.14322 -28.17437 -24.09450 -23.66378 -23.26422 -22.06351 -20.94701 -20.54497 -20.14549 -19.80983 -19.16591 -17.59834 -17.31097 -16.70077 -16.26255 -16.09590 -15.69187 -14.94894 -14.74689 -14.59565 -14.25943 -14.14152 -13.94079 -13.85888 -13.75168 -13.51854 -13.24092 -12.78643 -12.74704 -12.33307 -12.30391 -11.32923 -11.12575 -11.05428 -10.92821 -10.54293 -10.46127 -10.40723 -10.39853 -10.11894 -10.05418 -9.86031 -9.63691 -9.57021 -9.24910 -8.95330 -8.79861 -7.32724 -5.81053 -3.17199 1.00969 1.45294 2.45556 2.82971 2.99196 3.26447 3.28556 3.30581 3.33288 3.39902 4.29153 4.41747 4.52889 4.53676 4.72528 4.82320 4.91941 5.17021 5.34851 5.38703 5.42624 5.51348 5.54298 5.55940 5.70421 5.73993 5.85426 5.97143 5.99589 6.10700 6.14372 6.23137 6.32006 6.40838 6.42363 6.42944 6.57782 6.69231 6.82828 6.96809 7.00298 7.26117 7.94977 7.95507 7.98680 8.37770 9.15739 9.87959 10.07269 11.37225 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.022216 B = 0.002335 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.042815 B =11986.435269 C =12776.600412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.003 3.997 3 Si 0.886 3.114 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.243 4.243 8 H 0.091 0.909 9 N -0.748 5.748 10 C 0.188 3.812 11 H 0.059 0.941 12 C -0.137 4.137 13 C -0.115 4.115 14 C -0.125 4.125 15 C 0.150 3.850 16 H 0.094 0.906 17 N -0.724 5.724 18 C 0.587 3.413 19 O -0.520 6.520 20 C -0.055 4.055 21 C -0.045 4.045 22 C -0.238 4.238 23 C 0.594 3.406 24 N -0.856 5.856 25 O -0.543 6.543 26 C 0.072 3.928 27 N -0.523 5.523 28 H 0.422 0.578 29 C -0.133 4.133 30 H 0.259 0.741 31 H 0.360 0.640 32 H 0.068 0.932 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.391 0.609 39 H 0.160 0.840 40 H 0.398 0.602 41 H 0.404 0.596 42 H 0.181 0.819 43 H 0.062 0.938 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.549 -2.855 4.110 28.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.192 4.192 3 Si 0.716 3.284 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.373 4.373 8 H 0.109 0.891 9 N -0.390 5.390 10 C 0.078 3.922 11 H 0.077 0.923 12 C -0.177 4.177 13 C -0.154 4.154 14 C -0.163 4.163 15 C 0.046 3.954 16 H 0.112 0.888 17 N -0.374 5.374 18 C 0.373 3.627 19 O -0.396 6.396 20 C -0.166 4.166 21 C -0.070 4.070 22 C -0.249 4.249 23 C 0.381 3.619 24 N -0.419 5.419 25 O -0.420 6.420 26 C -0.071 4.071 27 N -0.118 5.118 28 H 0.260 0.740 29 C -0.172 4.172 30 H 0.070 0.930 31 H 0.192 0.808 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.224 0.776 39 H 0.177 0.823 40 H 0.226 0.774 41 H 0.234 0.766 42 H 0.198 0.802 43 H 0.081 0.919 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 27.542 -4.396 4.151 28.197 hybrid contribution 1.050 2.656 -0.157 2.860 sum 28.592 -1.740 3.994 28.922 Atomic orbital electron populations 1.69697 1.05083 1.25806 1.57455 1.24685 0.95239 0.97190 1.02117 0.86538 0.79082 0.85102 0.77666 1.21160 1.21790 1.20505 1.19077 0.80488 0.94749 1.42949 0.89101 1.42755 1.04033 1.01848 1.90365 1.20073 0.89290 0.89360 0.93479 0.92346 1.22256 1.00323 0.95247 0.99905 1.21485 0.94882 0.98744 1.00257 1.21897 0.98299 1.01058 0.95068 1.21089 0.81409 0.98618 0.94312 0.88828 1.46047 1.20061 1.11379 1.59907 1.17029 0.83020 0.84893 0.77748 1.90880 1.66729 1.23845 1.58102 1.20250 0.96283 0.86427 1.13639 1.21123 0.91019 0.99441 0.95452 1.19597 0.98459 0.93625 1.13192 1.17393 0.81480 0.85775 0.77300 1.43678 1.20631 1.13826 1.63811 1.90843 1.80777 1.15446 1.54981 1.22393 0.89292 0.97359 0.98027 1.41773 1.14898 1.10847 1.44257 0.73968 1.22149 0.97612 0.95436 1.01985 0.93045 0.80789 0.91290 0.92803 0.92230 0.91819 0.92162 0.91861 0.77605 0.82261 0.77445 0.76561 0.80216 0.91913 0.91210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.84 13.97 55.49 0.78 -28.07 16 2 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 3 Si 0.89 21.43 27.73 -169.99 -4.71 16.71 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 6 H -0.28 -6.24 6.52 56.52 0.37 -5.87 16 7 C -0.24 -6.63 10.41 -15.06 -0.16 -6.79 16 8 H 0.09 2.68 8.06 -52.49 -0.42 2.26 16 9 N -0.75 -16.72 4.92 -53.42 -0.26 -16.99 16 10 C 0.19 3.34 2.77 -67.93 -0.19 3.16 16 11 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 12 C -0.14 -2.22 5.50 -26.73 -0.15 -2.37 16 13 C -0.11 -1.53 5.92 -26.73 -0.16 -1.69 16 14 C -0.12 -1.52 5.49 -26.73 -0.15 -1.66 16 15 C 0.15 1.86 2.46 -67.90 -0.17 1.69 16 16 H 0.09 1.36 7.58 -51.93 -0.39 0.96 16 17 N -0.72 -7.22 5.07 -55.05 -0.28 -7.50 16 18 C 0.59 7.05 7.76 -12.80 -0.10 6.95 16 19 O -0.52 -8.38 16.52 5.21 0.09 -8.29 16 20 C -0.05 -0.53 6.99 -82.40 -0.58 -1.10 16 21 C -0.04 -0.49 10.37 -39.09 -0.41 -0.89 16 22 C -0.24 -2.02 6.13 -105.02 -0.64 -2.66 16 23 C 0.59 5.54 8.09 -12.54 -0.10 5.44 16 24 N -0.86 -3.67 8.86 30.42 0.27 -3.40 16 25 O -0.54 -7.70 17.75 5.27 0.09 -7.60 16 26 C 0.07 0.32 11.43 -16.50 -0.19 0.13 16 27 N -0.52 -2.69 5.91 -9.30 -0.05 -2.75 16 28 H 0.42 0.85 8.14 -40.82 -0.33 0.52 16 29 C -0.13 -1.82 4.86 -26.70 -0.13 -1.95 16 30 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 31 H 0.36 7.84 5.66 -40.82 -0.23 7.60 16 32 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.39 2.62 7.68 -40.82 -0.31 2.31 16 39 H 0.16 1.96 8.06 -52.49 -0.42 1.54 16 40 H 0.40 0.30 7.74 -40.82 -0.32 -0.01 16 41 H 0.40 1.38 8.93 -40.82 -0.36 1.02 16 42 H 0.18 -0.06 7.44 -52.48 -0.39 -0.45 16 43 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 365.96 15.07 5.51 5.51 Total: -1.00 -37.98 365.96 -7.93 -45.91 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -6.16 Total: 8.21 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: -3.20 Total: -1.75 kcal Atomic # 7 Polarization: -59.15 SS G_CDS: 0.45 Total: -58.70 kcal Atomic # 8 Polarization: -16.07 SS G_CDS: 0.18 Total: -15.89 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.71 Total: 16.71 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -37.98 -7.93 -45.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981422534.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.871 kcal (2) G-P(sol) polarization free energy of solvation -37.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds