Wall clock time and date at job start Tue Mar 31 2020 12:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86806 * 119.99765 * 2 1 4 4 H 1.48498 * 109.47162 * 269.99699 * 3 2 1 5 5 H 1.48493 * 109.46921 * 29.99956 * 3 2 1 6 6 H 1.48501 * 109.46561 * 149.99969 * 3 2 1 7 7 C 1.38804 * 119.99761 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00662 * 359.97438 * 7 2 1 9 9 N 1.36942 * 119.99697 * 180.02562 * 7 2 1 10 10 C 1.46500 * 120.00130 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.47129 * 34.99299 * 10 9 7 12 12 C 1.52999 * 109.46944 * 274.99901 * 10 9 7 13 13 C 1.53005 * 109.47159 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47452 * 59.99536 * 13 12 10 15 15 C 1.53002 * 109.46817 * 300.00239 * 14 13 12 16 16 H 1.08992 * 109.47063 * 299.99823 * 15 14 13 17 17 N 1.46499 * 109.46799 * 179.97438 * 15 14 13 18 18 C 1.34778 * 119.99771 * 85.00174 * 17 15 14 19 19 O 1.21604 * 120.00456 * 359.97438 * 18 17 15 20 20 C 1.47398 * 119.99788 * 180.02562 * 18 17 15 21 21 C 1.38203 * 126.46570 * 359.68366 * 20 18 17 22 22 N 1.34265 * 108.39900 * 179.86913 * 21 20 18 23 23 H 0.96998 * 125.39202 * 180.15401 * 22 21 20 24 24 C 1.37782 * 109.21177 * 0.40225 * 22 21 20 25 25 C 1.46812 * 125.84408 * 179.78684 * 24 22 21 26 26 N 1.34778 * 120.00295 * 359.95659 * 25 24 22 27 27 O 1.21671 * 119.99734 * 179.97438 * 25 24 22 28 28 C 1.36348 * 108.30188 * 359.75214 * 24 22 21 29 29 C 1.52997 * 109.47473 * 154.99556 * 10 9 7 30 30 H 0.97006 * 120.00219 * 0.02562 * 1 2 3 31 31 H 0.97000 * 120.00379 * 359.97438 * 9 7 2 32 32 H 1.09000 * 109.47486 * 59.99569 * 12 10 9 33 33 H 1.09002 * 109.46716 * 299.99651 * 12 10 9 34 34 H 1.09002 * 109.46935 * 299.99411 * 13 12 10 35 35 H 1.09001 * 109.46812 * 179.97438 * 13 12 10 36 36 H 1.08993 * 109.47194 * 179.97438 * 14 13 12 37 37 H 1.09002 * 109.46695 * 59.99734 * 14 13 12 38 38 H 0.97006 * 120.00568 * 264.99947 * 17 15 14 39 39 H 1.08003 * 125.79899 * 0.02562 * 21 20 18 40 40 H 0.97000 * 119.99429 * 0.02562 * 26 25 24 41 41 H 0.96999 * 119.99655 * 179.97438 * 26 25 24 42 42 H 1.08002 * 126.49217 * 179.97438 * 28 24 22 43 43 H 1.09002 * 109.47153 * 59.99757 * 29 10 9 44 44 H 1.09001 * 109.46832 * 299.99948 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4708 0.0000 11 1 3.5649 -3.2063 -0.5897 12 6 4.2577 -2.9756 1.4370 13 6 5.0233 -4.3003 1.4371 14 6 6.4107 -4.0877 0.8282 15 6 6.2650 -3.5829 -0.6088 16 1 5.7182 -4.3185 -1.1986 17 7 7.5934 -3.3787 -1.1917 18 6 8.2469 -4.4124 -1.7581 19 8 7.7341 -5.5147 -1.7850 20 6 9.5838 -4.2071 -2.3440 21 6 10.2859 -3.0177 -2.3916 22 7 11.4608 -3.2432 -3.0010 23 1 12.1465 -2.5766 -3.1634 24 6 11.5360 -4.5702 -3.3639 25 6 12.6613 -5.2096 -4.0570 26 7 13.7452 -4.4833 -4.3946 27 8 12.6151 -6.3951 -4.3268 28 6 10.3866 -5.1880 -2.9685 29 6 5.4995 -2.2587 -0.6091 30 1 -0.4851 0.8401 -0.0004 31 1 3.8646 -0.3621 0.0004 32 1 3.2693 -3.1267 1.8709 33 1 4.8049 -2.2401 2.0267 34 1 4.4765 -5.0360 0.8472 35 1 5.1274 -4.6597 2.4609 36 1 6.9562 -5.0312 0.8287 37 1 6.9574 -3.3519 1.4180 38 1 8.0028 -2.4995 -1.1700 39 1 9.9480 -2.0686 -2.0024 40 1 13.7820 -3.5382 -4.1793 41 1 14.4888 -4.9059 -4.8522 42 1 10.1369 -6.2296 -3.1068 43 1 6.0467 -1.5232 -0.0194 44 1 5.3957 -1.8991 -1.6329 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981523332.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:12 Heat of formation + Delta-G solvation = -30.905289 kcal Electronic energy + Delta-G solvation = -26077.305737 eV Core-core repulsion = 22222.768130 eV Total energy + Delta-G solvation = -3854.537607 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.01651 -39.80316 -39.19424 -37.83955 -34.75538 -34.35909 -33.38261 -31.77907 -31.32563 -30.30713 -29.09953 -28.09552 -24.06760 -23.57143 -23.28544 -21.96383 -20.88494 -20.64402 -20.10692 -19.62319 -19.24954 -17.62373 -17.42222 -16.60132 -16.34657 -15.94491 -15.75126 -14.92591 -14.65245 -14.52314 -14.38453 -14.09745 -13.91930 -13.81812 -13.69482 -13.40718 -13.17607 -12.73845 -12.65776 -12.24184 -12.20362 -11.25899 -10.99912 -10.97186 -10.84946 -10.80173 -10.42791 -10.35104 -10.27841 -10.22334 -10.03399 -9.70524 -9.58278 -9.55382 -9.01498 -8.90136 -8.80545 -7.27034 -5.76528 -3.12182 0.91803 1.52952 2.39679 2.82088 2.83789 3.23332 3.35320 3.37302 3.42626 3.43716 4.33055 4.36518 4.56828 4.58157 4.80250 4.89602 5.04432 5.28444 5.36359 5.46992 5.53310 5.54809 5.62699 5.66470 5.80698 5.84929 5.93059 5.97237 6.08920 6.14383 6.23304 6.25420 6.29360 6.41421 6.49670 6.58513 6.61499 6.66838 6.76991 6.90742 7.04683 7.54771 7.64417 8.00513 8.28649 8.42531 9.20928 9.93226 10.12933 11.41853 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.022229 B = 0.002323 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.331576 B =12048.589770 C =12838.017540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.002 3.998 3 Si 0.885 3.115 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.278 1.278 7 C -0.241 4.241 8 H 0.091 0.909 9 N -0.748 5.748 10 C 0.187 3.813 11 H 0.058 0.942 12 C -0.137 4.137 13 C -0.115 4.115 14 C -0.124 4.124 15 C 0.150 3.850 16 H 0.091 0.909 17 N -0.723 5.723 18 C 0.586 3.414 19 O -0.538 6.538 20 C -0.227 4.227 21 C 0.076 3.924 22 N -0.527 5.527 23 H 0.419 0.581 24 C -0.073 4.073 25 C 0.596 3.404 26 N -0.857 5.857 27 O -0.525 6.525 28 C -0.037 4.037 29 C -0.133 4.133 30 H 0.259 0.741 31 H 0.360 0.640 32 H 0.067 0.933 33 H 0.053 0.947 34 H 0.062 0.938 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.059 0.941 38 H 0.394 0.606 39 H 0.183 0.817 40 H 0.395 0.605 41 H 0.409 0.591 42 H 0.160 0.840 43 H 0.062 0.938 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.976 -3.162 -4.878 30.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.193 4.193 3 Si 0.716 3.284 4 H -0.212 1.212 5 H -0.219 1.219 6 H -0.204 1.204 7 C -0.370 4.370 8 H 0.109 0.891 9 N -0.390 5.390 10 C 0.077 3.923 11 H 0.076 0.924 12 C -0.177 4.177 13 C -0.154 4.154 14 C -0.163 4.163 15 C 0.046 3.954 16 H 0.109 0.891 17 N -0.373 5.373 18 C 0.374 3.626 19 O -0.415 6.415 20 C -0.237 4.237 21 C -0.066 4.066 22 N -0.122 5.122 23 H 0.257 0.743 24 C -0.184 4.184 25 C 0.381 3.619 26 N -0.421 5.421 27 O -0.401 6.401 28 C -0.063 4.063 29 C -0.171 4.171 30 H 0.069 0.931 31 H 0.192 0.808 32 H 0.086 0.914 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.228 0.772 39 H 0.200 0.800 40 H 0.222 0.778 41 H 0.240 0.760 42 H 0.178 0.822 43 H 0.081 0.919 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 29.278 -4.760 -5.074 30.093 hybrid contribution 1.440 2.577 -0.030 2.953 sum 30.718 -2.183 -5.103 31.216 Atomic orbital electron populations 1.69703 1.05084 1.25746 1.57662 1.24683 0.95237 0.97178 1.02219 0.86540 0.79159 0.85101 0.77641 1.21198 1.21852 1.20397 1.19086 0.80547 0.94725 1.42689 0.89124 1.42768 1.04000 1.01918 1.90345 1.20081 0.89461 0.89260 0.93450 0.92379 1.22251 1.00199 0.95292 0.99949 1.21486 0.95073 0.98673 1.00153 1.21890 0.98049 1.01034 0.95309 1.20984 0.81938 0.98323 0.94143 0.89120 1.45969 1.19611 1.11717 1.59967 1.17352 0.83675 0.84386 0.77236 1.90799 1.67960 1.24236 1.58519 1.19789 0.97639 0.93978 1.12250 1.22515 0.85962 0.99738 0.98350 1.41668 1.16367 1.09264 1.44936 0.74296 1.19975 0.99936 0.84257 1.14214 1.17027 0.81113 0.86006 0.77707 1.43706 1.20865 1.13605 1.63884 1.90924 1.80131 1.14613 1.54393 1.21167 0.90248 0.99982 0.94921 1.22115 0.97441 0.95676 1.01914 0.93104 0.80790 0.91438 0.92850 0.91911 0.92385 0.91937 0.92204 0.77220 0.79967 0.77760 0.75952 0.82236 0.91934 0.91210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.12 13.97 55.49 0.78 -28.34 16 2 C 0.00 0.07 5.50 -17.43 -0.10 -0.03 16 3 Si 0.88 21.63 27.74 -169.99 -4.71 16.91 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.28 -6.31 6.52 56.52 0.37 -5.94 16 7 C -0.24 -6.64 10.41 -15.06 -0.16 -6.80 16 8 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 9 N -0.75 -17.01 4.93 -53.43 -0.26 -17.27 16 10 C 0.19 3.42 2.77 -67.93 -0.19 3.23 16 11 H 0.06 1.14 8.08 -51.93 -0.42 0.72 16 12 C -0.14 -2.29 5.50 -26.73 -0.15 -2.44 16 13 C -0.12 -1.60 5.92 -26.73 -0.16 -1.76 16 14 C -0.12 -1.59 5.49 -26.73 -0.15 -1.74 16 15 C 0.15 1.97 2.45 -67.96 -0.17 1.80 16 16 H 0.09 1.38 7.58 -51.93 -0.39 0.99 16 17 N -0.72 -7.71 5.07 -54.92 -0.28 -7.98 16 18 C 0.59 7.47 7.78 -12.53 -0.10 7.37 16 19 O -0.54 -9.17 16.58 5.27 0.09 -9.09 16 20 C -0.23 -2.23 6.13 -105.02 -0.64 -2.88 16 21 C 0.08 0.41 11.43 -16.50 -0.19 0.22 16 22 N -0.53 -2.11 5.91 -9.30 -0.05 -2.17 16 23 H 0.42 -0.04 8.14 -40.82 -0.33 -0.38 16 24 C -0.07 -0.58 6.99 -82.41 -0.58 -1.16 16 25 C 0.60 4.95 8.06 -12.79 -0.10 4.85 16 26 N -0.86 -2.84 8.87 30.29 0.27 -2.57 16 27 O -0.53 -6.79 17.69 5.21 0.09 -6.69 16 28 C -0.04 -0.40 10.37 -39.10 -0.41 -0.80 16 29 C -0.13 -1.88 4.85 -26.76 -0.13 -2.01 16 30 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 31 H 0.36 7.96 5.66 -40.82 -0.23 7.73 16 32 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 33 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.39 2.90 7.51 -40.82 -0.31 2.59 16 39 H 0.18 0.30 7.44 -52.48 -0.39 -0.09 16 40 H 0.39 -0.04 7.91 -40.82 -0.32 -0.37 16 41 H 0.41 0.98 8.93 -40.82 -0.36 0.62 16 42 H 0.16 1.93 8.06 -52.49 -0.42 1.51 16 43 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 365.95 15.07 5.51 5.51 Total: -1.00 -38.50 365.95 -7.93 -46.44 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -6.16 Total: 7.39 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: -3.20 Total: -2.14 kcal Atomic # 7 Polarization: -58.78 SS G_CDS: 0.45 Total: -58.33 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: 0.18 Total: -15.78 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.71 Total: 16.91 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -38.50 -7.93 -46.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981523332.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.533 kcal (2) G-P(sol) polarization free energy of solvation -38.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds