Wall clock time and date at job start Tue Mar 31 2020 12:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86806 * 119.99765 * 2 1 4 4 H 1.48498 * 109.47162 * 269.99699 * 3 2 1 5 5 H 1.48493 * 109.46921 * 29.99956 * 3 2 1 6 6 H 1.48501 * 109.46561 * 149.99969 * 3 2 1 7 7 C 1.38804 * 119.99761 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00662 * 359.97438 * 7 2 1 9 9 N 1.36942 * 119.99697 * 180.02562 * 7 2 1 10 10 C 1.46500 * 120.00130 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.47129 * 34.99299 * 10 9 7 12 12 C 1.52999 * 109.46944 * 274.99901 * 10 9 7 13 13 C 1.53005 * 109.47159 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47452 * 59.99536 * 13 12 10 15 15 C 1.53002 * 109.46817 * 300.00239 * 14 13 12 16 16 H 1.08992 * 109.47063 * 299.99823 * 15 14 13 17 17 N 1.46499 * 109.46799 * 179.97438 * 15 14 13 18 18 C 1.34778 * 119.99771 * 85.00174 * 17 15 14 19 19 O 1.21604 * 120.00456 * 359.97438 * 18 17 15 20 20 C 1.47398 * 119.99788 * 180.02562 * 18 17 15 21 21 C 1.38203 * 126.46570 * 359.68366 * 20 18 17 22 22 N 1.34265 * 108.39900 * 179.86913 * 21 20 18 23 23 H 0.96998 * 125.39202 * 180.15401 * 22 21 20 24 24 C 1.37782 * 109.21177 * 0.40225 * 22 21 20 25 25 C 1.46812 * 125.84408 * 179.78684 * 24 22 21 26 26 N 1.34778 * 120.00295 * 359.95659 * 25 24 22 27 27 O 1.21671 * 119.99734 * 179.97438 * 25 24 22 28 28 C 1.36348 * 108.30188 * 359.75214 * 24 22 21 29 29 C 1.52997 * 109.47473 * 154.99556 * 10 9 7 30 30 H 0.97006 * 120.00219 * 0.02562 * 1 2 3 31 31 H 0.97000 * 120.00379 * 359.97438 * 9 7 2 32 32 H 1.09000 * 109.47486 * 59.99569 * 12 10 9 33 33 H 1.09002 * 109.46716 * 299.99651 * 12 10 9 34 34 H 1.09002 * 109.46935 * 299.99411 * 13 12 10 35 35 H 1.09001 * 109.46812 * 179.97438 * 13 12 10 36 36 H 1.08993 * 109.47194 * 179.97438 * 14 13 12 37 37 H 1.09002 * 109.46695 * 59.99734 * 14 13 12 38 38 H 0.97006 * 120.00568 * 264.99947 * 17 15 14 39 39 H 1.08003 * 125.79899 * 0.02562 * 21 20 18 40 40 H 0.97000 * 119.99429 * 0.02562 * 26 25 24 41 41 H 0.96999 * 119.99655 * 179.97438 * 26 25 24 42 42 H 1.08002 * 126.49217 * 179.97438 * 28 24 22 43 43 H 1.09002 * 109.47153 * 59.99757 * 29 10 9 44 44 H 1.09001 * 109.46832 * 299.99948 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4708 0.0000 11 1 3.5649 -3.2063 -0.5897 12 6 4.2577 -2.9756 1.4370 13 6 5.0233 -4.3003 1.4371 14 6 6.4107 -4.0877 0.8282 15 6 6.2650 -3.5829 -0.6088 16 1 5.7182 -4.3185 -1.1986 17 7 7.5934 -3.3787 -1.1917 18 6 8.2469 -4.4124 -1.7581 19 8 7.7341 -5.5147 -1.7850 20 6 9.5838 -4.2071 -2.3440 21 6 10.2859 -3.0177 -2.3916 22 7 11.4608 -3.2432 -3.0010 23 1 12.1465 -2.5766 -3.1634 24 6 11.5360 -4.5702 -3.3639 25 6 12.6613 -5.2096 -4.0570 26 7 13.7452 -4.4833 -4.3946 27 8 12.6151 -6.3951 -4.3268 28 6 10.3866 -5.1880 -2.9685 29 6 5.4995 -2.2587 -0.6091 30 1 -0.4851 0.8401 -0.0004 31 1 3.8646 -0.3621 0.0004 32 1 3.2693 -3.1267 1.8709 33 1 4.8049 -2.2401 2.0267 34 1 4.4765 -5.0360 0.8472 35 1 5.1274 -4.6597 2.4609 36 1 6.9562 -5.0312 0.8287 37 1 6.9574 -3.3519 1.4180 38 1 8.0028 -2.4995 -1.1700 39 1 9.9480 -2.0686 -2.0024 40 1 13.7820 -3.5382 -4.1793 41 1 14.4888 -4.9059 -4.8522 42 1 10.1369 -6.2296 -3.1068 43 1 6.0467 -1.5232 -0.0194 44 1 5.3957 -1.8991 -1.6329 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981523332.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:11 Heat of formation + Delta-G solvation = -64.199801 kcal Electronic energy + Delta-G solvation = -26078.749495 eV Core-core repulsion = 22222.768130 eV Total energy + Delta-G solvation = -3855.981365 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.60933 -40.80099 -39.93064 -39.06695 -36.27798 -34.93082 -34.76824 -33.25250 -32.41613 -31.15323 -30.28612 -29.38900 -25.44275 -24.73665 -24.09774 -23.18810 -22.13006 -21.30652 -21.19377 -20.58109 -20.06491 -19.42039 -18.02451 -17.42328 -17.29164 -16.76337 -16.41666 -16.38744 -15.95993 -15.69215 -15.35776 -15.10472 -15.06558 -14.87196 -14.68439 -14.57578 -14.41248 -14.31056 -13.68608 -13.49780 -13.32750 -12.98240 -12.84171 -12.31845 -12.12953 -11.99888 -11.77307 -11.62265 -11.54176 -11.48860 -11.39333 -10.90403 -10.85847 -10.85567 -10.25763 -9.94654 -9.41548 -9.27050 -7.97674 -5.31644 0.35500 0.78124 1.40734 1.46622 1.53958 1.94353 2.16452 2.17717 2.53461 2.54111 2.57687 3.32974 3.51069 3.81886 3.90769 3.92848 4.05740 4.07333 4.15392 4.28504 4.32937 4.42919 4.56496 4.61423 4.69129 4.78330 4.81114 4.88496 5.03077 5.18601 5.20407 5.24451 5.34605 5.40497 5.50546 5.53637 5.54949 5.67853 5.77675 5.82426 6.25901 6.26032 6.44427 6.73650 7.12958 7.17059 7.40548 7.87901 8.09692 9.24120 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.022229 B = 0.002323 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.331576 B =12048.589770 C =12838.017540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.989 5.989 2 C -0.072 4.072 3 Si 0.962 3.038 4 H -0.278 1.278 5 H -0.301 1.301 6 H -0.243 1.243 7 C -0.228 4.228 8 H 0.049 0.951 9 N -0.748 5.748 10 C 0.178 3.822 11 H 0.031 0.969 12 C -0.127 4.127 13 C -0.109 4.109 14 C -0.115 4.115 15 C 0.158 3.842 16 H 0.060 0.940 17 N -0.704 5.704 18 C 0.584 3.416 19 O -0.596 6.596 20 C -0.263 4.263 21 C 0.122 3.878 22 N -0.497 5.497 23 H 0.445 0.555 24 C -0.071 4.071 25 C 0.593 3.407 26 N -0.828 5.828 27 O -0.583 6.583 28 C -0.074 4.074 29 C -0.116 4.116 30 H 0.256 0.744 31 H 0.368 0.632 32 H 0.034 0.966 33 H 0.067 0.933 34 H 0.049 0.951 35 H 0.074 0.926 36 H 0.055 0.945 37 H 0.084 0.916 38 H 0.416 0.584 39 H 0.235 0.765 40 H 0.416 0.584 41 H 0.417 0.583 42 H 0.125 0.875 43 H 0.092 0.908 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.447 0.579 -4.499 34.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.639 5.639 2 C -0.263 4.263 3 Si 0.789 3.211 4 H -0.204 1.204 5 H -0.228 1.228 6 H -0.167 1.167 7 C -0.359 4.359 8 H 0.067 0.933 9 N -0.391 5.391 10 C 0.070 3.930 11 H 0.049 0.951 12 C -0.167 4.167 13 C -0.148 4.148 14 C -0.154 4.154 15 C 0.052 3.948 16 H 0.078 0.922 17 N -0.355 5.355 18 C 0.374 3.626 19 O -0.477 6.477 20 C -0.273 4.273 21 C -0.023 4.023 22 N -0.094 5.094 23 H 0.288 0.712 24 C -0.182 4.182 25 C 0.379 3.621 26 N -0.393 5.393 27 O -0.463 6.463 28 C -0.100 4.100 29 C -0.155 4.155 30 H 0.065 0.935 31 H 0.202 0.798 32 H 0.053 0.947 33 H 0.085 0.915 34 H 0.068 0.932 35 H 0.093 0.907 36 H 0.074 0.926 37 H 0.102 0.898 38 H 0.254 0.746 39 H 0.251 0.749 40 H 0.247 0.753 41 H 0.250 0.750 42 H 0.143 0.857 43 H 0.110 0.890 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 33.893 -0.947 -4.704 34.231 hybrid contribution 0.055 1.332 -0.174 1.344 sum 33.948 0.385 -4.877 34.299 Atomic orbital electron populations 1.69917 1.07411 1.26632 1.59968 1.25613 0.96196 1.01683 1.02807 0.85301 0.78811 0.78894 0.78088 1.20376 1.22812 1.16674 1.18992 0.82842 0.93159 1.40897 0.93303 1.42690 1.02203 1.03868 1.90338 1.20282 0.91291 0.86946 0.94486 0.95081 1.22078 0.99114 0.97078 0.98448 1.21419 0.95431 0.96735 1.01184 1.21807 0.97034 1.01423 0.95108 1.20688 0.82897 0.97004 0.94169 0.92161 1.45647 1.18350 1.12442 1.59082 1.17786 0.84505 0.83736 0.76558 1.90771 1.69517 1.26614 1.60816 1.19542 0.97025 0.95903 1.14788 1.23096 0.84606 0.99571 0.94989 1.41579 1.16647 1.08147 1.43043 0.71202 1.19684 0.98865 0.85716 1.13958 1.17146 0.82057 0.85451 0.77449 1.43456 1.19359 1.14401 1.62043 1.90901 1.81341 1.17177 1.56885 1.21066 0.92405 0.99354 0.97202 1.21903 0.94797 0.96737 1.02073 0.93505 0.79807 0.94684 0.91453 0.93216 0.90703 0.92632 0.89761 0.74639 0.74866 0.75314 0.75025 0.85666 0.88957 0.91043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.61 13.97 21.65 0.30 -63.31 16 2 C -0.07 -4.22 5.50 84.86 0.47 -3.76 16 3 Si 0.96 43.93 27.74 68.60 1.90 45.84 16 4 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 5 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 6 H -0.24 -9.57 6.52 99.48 0.65 -8.92 16 7 C -0.23 -12.87 10.41 84.03 0.87 -12.00 16 8 H 0.05 3.10 8.06 -2.91 -0.02 3.07 16 9 N -0.75 -33.21 4.93 -322.95 -1.59 -34.80 16 10 C 0.18 6.42 2.77 44.99 0.12 6.54 16 11 H 0.03 1.28 8.08 -2.39 -0.02 1.26 16 12 C -0.13 -4.16 5.50 30.60 0.17 -3.99 16 13 C -0.11 -2.94 5.92 30.60 0.18 -2.76 16 14 C -0.12 -2.71 5.49 30.59 0.17 -2.54 16 15 C 0.16 3.87 2.45 44.98 0.11 3.98 16 16 H 0.06 1.88 7.58 -2.39 -0.02 1.86 16 17 N -0.70 -13.04 5.07 -445.92 -2.26 -15.30 16 18 C 0.58 14.46 7.78 86.66 0.67 15.14 16 19 O -0.60 -21.34 16.58 -4.04 -0.07 -21.41 16 20 C -0.26 -4.76 6.13 -20.12 -0.12 -4.88 16 21 C 0.12 0.68 11.43 84.31 0.96 1.65 16 22 N -0.50 -1.69 5.91 -183.35 -1.08 -2.77 16 23 H 0.44 -2.81 8.14 -92.71 -0.75 -3.56 16 24 C -0.07 -1.01 6.99 40.01 0.28 -0.73 16 25 C 0.59 9.28 8.06 86.49 0.70 9.98 16 26 N -0.83 -3.23 8.87 -176.30 -1.56 -4.80 16 27 O -0.58 -15.70 17.69 -4.26 -0.08 -15.77 16 28 C -0.07 -1.63 10.37 22.58 0.23 -1.39 16 29 C -0.12 -2.97 4.85 30.58 0.15 -2.82 16 30 H 0.26 15.69 8.31 -92.70 -0.77 14.92 16 31 H 0.37 15.08 5.66 -92.71 -0.52 14.55 16 32 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.42 3.92 7.51 -92.70 -0.70 3.23 16 39 H 0.24 -1.11 7.44 -2.91 -0.02 -1.13 16 40 H 0.42 -1.86 7.91 -92.71 -0.73 -2.59 16 41 H 0.42 1.00 8.93 -92.71 -0.83 0.17 16 42 H 0.13 3.51 8.06 -2.91 -0.02 3.49 16 43 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -93.33 365.95 -1.97 -95.30 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: -2.51 Total: 14.59 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: 4.97 Total: 2.42 kcal Atomic # 7 Polarization: -114.78 SS G_CDS: -6.19 Total: -120.97 kcal Atomic # 8 Polarization: -37.04 SS G_CDS: -0.14 Total: -37.18 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 1.90 Total: 45.84 kcal Total: -93.33 -1.97 -95.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981523332.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.104 kcal (2) G-P(sol) polarization free energy of solvation -93.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds