Wall clock time and date at job start Tue Mar 31 2020 12:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86804 * 120.00002 * 2 1 4 4 H 1.48494 * 109.46922 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46712 * 299.99726 * 3 2 1 6 6 H 1.48498 * 109.47261 * 59.99740 * 3 2 1 7 7 C 1.38812 * 119.99889 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99895 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99944 * 0.02562 * 7 2 1 10 10 C 1.46497 * 119.99794 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.47120 * 325.00483 * 10 9 7 12 12 C 1.52999 * 109.47051 * 85.00246 * 10 9 7 13 13 C 1.53002 * 109.47179 * 179.97438 * 12 10 9 14 14 C 1.53005 * 109.46840 * 300.00084 * 13 12 10 15 15 C 1.52999 * 109.47303 * 59.99992 * 14 13 12 16 16 H 1.08999 * 109.46965 * 59.99658 * 15 14 13 17 17 N 1.46499 * 109.47136 * 180.02562 * 15 14 13 18 18 C 1.34777 * 119.99665 * 275.27771 * 17 15 14 19 19 O 1.21603 * 120.00257 * 359.72088 * 18 17 15 20 20 C 1.47394 * 119.99480 * 179.72402 * 18 17 15 21 21 C 1.38201 * 126.46521 * 0.02562 * 20 18 17 22 22 N 1.34263 * 108.39811 * 179.97438 * 21 20 18 23 23 H 0.97004 * 125.39773 * 180.02562 * 22 21 20 24 24 C 1.37781 * 109.21739 * 359.97438 * 22 21 20 25 25 C 1.46806 * 125.85344 * 180.02562 * 24 22 21 26 26 N 1.34782 * 120.00109 * 0.02562 * 25 24 22 27 27 O 1.21680 * 120.00124 * 180.02562 * 25 24 22 28 28 C 1.36355 * 108.29829 * 359.74594 * 24 22 21 29 29 C 1.52992 * 109.47176 * 204.99989 * 10 9 7 30 30 H 0.97001 * 119.99930 * 0.02562 * 1 2 3 31 31 H 0.96997 * 119.99484 * 0.02562 * 9 7 2 32 32 H 1.09005 * 109.47368 * 299.99995 * 12 10 9 33 33 H 1.09000 * 109.47077 * 59.99600 * 12 10 9 34 34 H 1.08999 * 109.47056 * 60.00198 * 13 12 10 35 35 H 1.09000 * 109.46999 * 179.97438 * 13 12 10 36 36 H 1.09006 * 109.46786 * 299.99624 * 14 13 12 37 37 H 1.08999 * 109.46630 * 180.02562 * 14 13 12 38 38 H 0.97001 * 119.99790 * 94.99484 * 17 15 14 39 39 H 1.07997 * 125.80219 * 359.93686 * 21 20 18 40 40 H 0.97002 * 119.99199 * 359.97438 * 26 25 24 41 41 H 0.96998 * 120.00327 * 179.97438 * 26 25 24 42 42 H 1.08004 * 126.49475 * 180.24569 * 28 24 22 43 43 H 1.09009 * 109.47102 * 60.00236 * 29 10 9 44 44 H 1.08999 * 109.47499 * 300.00261 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9688 -3.5505 -0.5888 12 6 2.4218 -4.0356 1.4375 13 6 3.1863 -5.3609 1.4376 14 6 2.3085 -6.4560 0.8281 15 6 1.9447 -6.0772 -0.6089 16 1 2.8554 -5.9713 -1.1984 17 7 1.1038 -7.1254 -1.1922 18 6 1.6723 -8.2108 -1.7537 19 8 2.8833 -8.3176 -1.7805 20 6 0.8260 -9.2682 -2.3351 21 6 -0.5552 -9.2841 -2.3781 22 7 -0.9473 -10.4144 -2.9875 23 1 -1.8674 -10.6754 -3.1494 24 6 0.1643 -11.1445 -3.3476 25 6 0.1555 -12.4410 -4.0362 26 7 -1.0155 -13.0177 -4.3722 27 8 1.2053 -12.9950 -4.3038 28 6 1.2742 -10.4536 -2.9602 29 6 1.1809 -4.7521 -0.6091 30 1 -0.4850 0.8401 -0.0004 31 1 0.3556 -2.3880 -0.0002 32 1 3.0468 -3.2552 1.8719 33 1 1.5111 -4.1418 2.0270 34 1 4.0970 -5.2551 0.8482 35 1 3.4459 -5.6306 2.4614 36 1 1.3978 -6.5618 1.4177 37 1 2.8530 -7.4002 0.8286 38 1 0.1378 -7.0401 -1.1707 39 1 -1.2083 -8.5178 -1.9874 40 1 -1.8524 -12.5761 -4.1585 41 1 -1.0214 -13.8741 -4.8275 42 1 2.3012 -10.7565 -3.1016 43 1 0.9217 -4.4822 -1.6329 44 1 0.2702 -4.8584 -0.0197 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981523336.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:17 Heat of formation + Delta-G solvation = -35.497284 kcal Electronic energy + Delta-G solvation = -26006.037612 eV Core-core repulsion = 22151.300881 eV Total energy + Delta-G solvation = -3854.736731 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.96983 -39.73832 -39.14471 -37.73401 -34.62083 -34.32405 -33.32002 -31.73050 -31.10681 -30.24848 -28.90482 -27.70565 -24.05004 -23.63464 -23.38417 -21.87648 -20.93280 -20.62211 -20.03010 -19.56878 -19.07651 -17.50589 -17.07992 -16.53934 -16.26671 -15.90678 -15.70904 -14.87898 -14.63537 -14.40425 -14.33435 -14.04268 -13.88782 -13.71894 -13.54168 -13.44494 -13.08964 -12.71613 -12.61089 -12.09193 -12.02898 -10.98436 -10.90169 -10.88120 -10.76859 -10.69019 -10.31886 -10.31162 -10.25853 -10.14665 -10.04362 -9.69323 -9.56777 -9.50590 -8.95699 -8.86589 -8.74707 -6.95413 -5.76995 -3.05140 0.96104 1.57761 2.44372 2.85821 2.87737 3.30095 3.43662 3.47934 3.50089 3.51755 4.37055 4.42391 4.58850 4.62039 4.87265 5.03714 5.14133 5.35928 5.44932 5.52709 5.58705 5.64811 5.72273 5.80293 5.91568 5.98182 6.01082 6.06974 6.17689 6.18815 6.29464 6.34995 6.38774 6.56027 6.58665 6.64062 6.68867 6.76297 6.81189 6.99521 7.14902 7.61940 7.67722 7.72302 8.34630 8.42082 9.53349 10.10834 10.45516 11.45877 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.025707 B = 0.002155 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.955416 B =12992.657306 C =13548.308510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.016 4.016 3 Si 0.905 3.095 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.234 4.234 8 H 0.071 0.929 9 N -0.724 5.724 10 C 0.183 3.817 11 H 0.049 0.951 12 C -0.136 4.136 13 C -0.115 4.115 14 C -0.124 4.124 15 C 0.150 3.850 16 H 0.088 0.912 17 N -0.722 5.722 18 C 0.586 3.414 19 O -0.540 6.540 20 C -0.227 4.227 21 C 0.077 3.923 22 N -0.527 5.527 23 H 0.419 0.581 24 C -0.074 4.074 25 C 0.596 3.404 26 N -0.857 5.857 27 O -0.526 6.526 28 C -0.037 4.037 29 C -0.128 4.128 30 H 0.254 0.746 31 H 0.383 0.617 32 H 0.062 0.938 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.395 0.605 39 H 0.184 0.816 40 H 0.395 0.605 41 H 0.409 0.591 42 H 0.160 0.840 43 H 0.068 0.932 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.939 -24.784 -4.853 26.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.366 4.366 8 H 0.089 0.911 9 N -0.365 5.365 10 C 0.072 3.928 11 H 0.067 0.933 12 C -0.177 4.177 13 C -0.154 4.154 14 C -0.162 4.162 15 C 0.046 3.954 16 H 0.106 0.894 17 N -0.371 5.371 18 C 0.373 3.627 19 O -0.417 6.417 20 C -0.237 4.237 21 C -0.065 4.065 22 N -0.122 5.122 23 H 0.257 0.743 24 C -0.185 4.185 25 C 0.382 3.618 26 N -0.421 5.421 27 O -0.401 6.401 28 C -0.063 4.063 29 C -0.167 4.167 30 H 0.064 0.936 31 H 0.216 0.784 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.229 0.771 39 H 0.201 0.799 40 H 0.223 0.777 41 H 0.240 0.760 42 H 0.177 0.823 43 H 0.087 0.913 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.260 -25.023 -5.053 26.285 hybrid contribution -1.475 0.822 -0.032 1.689 sum -7.735 -24.201 -5.085 25.911 Atomic orbital electron populations 1.69670 1.05089 1.25460 1.58114 1.24736 0.95527 0.97677 1.03200 0.86131 0.78873 0.84186 0.77127 1.20515 1.21930 1.21950 1.19306 0.91083 0.84061 1.42111 0.91062 1.42408 1.05723 0.99745 1.88601 1.20105 0.94158 0.85502 0.93009 0.93311 1.22284 0.99686 0.95281 1.00416 1.21489 0.98579 0.95353 0.99951 1.21883 1.00046 0.98881 0.95430 1.21004 0.94518 0.85938 0.93957 0.89353 1.45979 1.10127 1.21062 1.59978 1.17352 0.87213 0.80861 0.77238 1.90790 1.14069 1.78354 1.58528 1.19799 0.92201 0.99440 1.12249 1.22533 0.95548 0.90174 0.98208 1.41668 1.08573 1.17000 1.44997 0.74291 1.19965 0.87023 0.97047 1.14424 1.17030 0.83998 0.83145 0.77652 1.43706 1.07923 1.26389 1.64042 1.90924 1.31378 1.63443 1.54398 1.21165 0.98461 0.91698 0.95010 1.22071 0.99294 0.93427 1.01935 0.93649 0.78383 0.91943 0.92719 0.92142 0.92557 0.92158 0.92079 0.77148 0.79890 0.77746 0.75973 0.82277 0.91326 0.91808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.80 13.06 55.49 0.72 -27.07 16 2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 3 Si 0.91 22.30 29.55 -169.99 -5.02 17.27 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 7 C -0.23 -6.41 9.93 -15.06 -0.15 -6.56 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.72 -17.59 5.12 -53.43 -0.27 -17.87 16 10 C 0.18 3.50 2.77 -67.94 -0.19 3.31 16 11 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 12 C -0.14 -2.37 5.50 -26.73 -0.15 -2.52 16 13 C -0.11 -1.66 5.92 -26.73 -0.16 -1.82 16 14 C -0.12 -1.67 5.49 -26.73 -0.15 -1.81 16 15 C 0.15 2.07 2.45 -67.96 -0.17 1.91 16 16 H 0.09 1.41 7.58 -51.93 -0.39 1.01 16 17 N -0.72 -8.21 5.07 -54.92 -0.28 -8.49 16 18 C 0.59 7.78 7.77 -12.53 -0.10 7.69 16 19 O -0.54 -9.46 16.58 5.27 0.09 -9.38 16 20 C -0.23 -2.34 6.13 -105.02 -0.64 -2.99 16 21 C 0.08 0.45 11.43 -16.50 -0.19 0.26 16 22 N -0.53 -2.33 5.91 -9.31 -0.05 -2.38 16 23 H 0.42 0.12 8.14 -40.82 -0.33 -0.21 16 24 C -0.07 -0.61 6.99 -82.41 -0.58 -1.19 16 25 C 0.60 5.12 8.06 -12.79 -0.10 5.02 16 26 N -0.86 -3.06 8.87 30.29 0.27 -2.79 16 27 O -0.53 -6.93 17.69 5.21 0.09 -6.84 16 28 C -0.04 -0.41 10.37 -39.09 -0.41 -0.82 16 29 C -0.13 -1.96 4.85 -26.76 -0.13 -2.09 16 30 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 31 H 0.38 9.80 7.80 -40.82 -0.32 9.48 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.39 3.23 7.51 -40.82 -0.31 2.92 16 39 H 0.18 0.41 7.44 -52.49 -0.39 0.02 16 40 H 0.40 0.07 7.91 -40.82 -0.32 -0.25 16 41 H 0.41 1.08 8.93 -40.82 -0.36 0.71 16 42 H 0.16 1.98 8.06 -52.48 -0.42 1.56 16 43 H 0.07 1.09 8.14 -51.92 -0.42 0.67 16 44 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 369.07 15.07 5.56 5.56 Total: -1.00 -37.52 369.07 -8.29 -45.81 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -6.20 Total: 8.33 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: -3.20 Total: -2.16 kcal Atomic # 7 Polarization: -58.99 SS G_CDS: 0.39 Total: -58.60 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: 0.18 Total: -16.21 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -37.52 -8.29 -45.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981523336.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.313 kcal (2) G-P(sol) polarization free energy of solvation -37.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds