Wall clock time and date at job start Tue Mar 31 2020 12:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86804 * 120.00002 * 2 1 4 4 H 1.48494 * 109.46922 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46712 * 299.99726 * 3 2 1 6 6 H 1.48498 * 109.47261 * 59.99740 * 3 2 1 7 7 C 1.38812 * 119.99889 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99895 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99944 * 0.02562 * 7 2 1 10 10 C 1.46497 * 119.99794 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.47120 * 325.00483 * 10 9 7 12 12 C 1.52999 * 109.47051 * 85.00246 * 10 9 7 13 13 C 1.53002 * 109.47179 * 179.97438 * 12 10 9 14 14 C 1.53005 * 109.46840 * 300.00084 * 13 12 10 15 15 C 1.52999 * 109.47303 * 59.99992 * 14 13 12 16 16 H 1.08999 * 109.46965 * 59.99658 * 15 14 13 17 17 N 1.46499 * 109.47136 * 180.02562 * 15 14 13 18 18 C 1.34777 * 119.99665 * 275.27771 * 17 15 14 19 19 O 1.21603 * 120.00257 * 359.72088 * 18 17 15 20 20 C 1.47394 * 119.99480 * 179.72402 * 18 17 15 21 21 C 1.38201 * 126.46521 * 0.02562 * 20 18 17 22 22 N 1.34263 * 108.39811 * 179.97438 * 21 20 18 23 23 H 0.97004 * 125.39773 * 180.02562 * 22 21 20 24 24 C 1.37781 * 109.21739 * 359.97438 * 22 21 20 25 25 C 1.46806 * 125.85344 * 180.02562 * 24 22 21 26 26 N 1.34782 * 120.00109 * 0.02562 * 25 24 22 27 27 O 1.21680 * 120.00124 * 180.02562 * 25 24 22 28 28 C 1.36355 * 108.29829 * 359.74594 * 24 22 21 29 29 C 1.52992 * 109.47176 * 204.99989 * 10 9 7 30 30 H 0.97001 * 119.99930 * 0.02562 * 1 2 3 31 31 H 0.96997 * 119.99484 * 0.02562 * 9 7 2 32 32 H 1.09005 * 109.47368 * 299.99995 * 12 10 9 33 33 H 1.09000 * 109.47077 * 59.99600 * 12 10 9 34 34 H 1.08999 * 109.47056 * 60.00198 * 13 12 10 35 35 H 1.09000 * 109.46999 * 179.97438 * 13 12 10 36 36 H 1.09006 * 109.46786 * 299.99624 * 14 13 12 37 37 H 1.08999 * 109.46630 * 180.02562 * 14 13 12 38 38 H 0.97001 * 119.99790 * 94.99484 * 17 15 14 39 39 H 1.07997 * 125.80219 * 359.93686 * 21 20 18 40 40 H 0.97002 * 119.99199 * 359.97438 * 26 25 24 41 41 H 0.96998 * 120.00327 * 179.97438 * 26 25 24 42 42 H 1.08004 * 126.49475 * 180.24569 * 28 24 22 43 43 H 1.09009 * 109.47102 * 60.00236 * 29 10 9 44 44 H 1.08999 * 109.47499 * 300.00261 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9688 -3.5505 -0.5888 12 6 2.4218 -4.0356 1.4375 13 6 3.1863 -5.3609 1.4376 14 6 2.3085 -6.4560 0.8281 15 6 1.9447 -6.0772 -0.6089 16 1 2.8554 -5.9713 -1.1984 17 7 1.1038 -7.1254 -1.1922 18 6 1.6723 -8.2108 -1.7537 19 8 2.8833 -8.3176 -1.7805 20 6 0.8260 -9.2682 -2.3351 21 6 -0.5552 -9.2841 -2.3781 22 7 -0.9473 -10.4144 -2.9875 23 1 -1.8674 -10.6754 -3.1494 24 6 0.1643 -11.1445 -3.3476 25 6 0.1555 -12.4410 -4.0362 26 7 -1.0155 -13.0177 -4.3722 27 8 1.2053 -12.9950 -4.3038 28 6 1.2742 -10.4536 -2.9602 29 6 1.1809 -4.7521 -0.6091 30 1 -0.4850 0.8401 -0.0004 31 1 0.3556 -2.3880 -0.0002 32 1 3.0468 -3.2552 1.8719 33 1 1.5111 -4.1418 2.0270 34 1 4.0970 -5.2551 0.8482 35 1 3.4459 -5.6306 2.4614 36 1 1.3978 -6.5618 1.4177 37 1 2.8530 -7.4002 0.8286 38 1 0.1378 -7.0401 -1.1707 39 1 -1.2083 -8.5178 -1.9874 40 1 -1.8524 -12.5761 -4.1585 41 1 -1.0214 -13.8741 -4.8275 42 1 2.3012 -10.7565 -3.1016 43 1 0.9217 -4.4822 -1.6329 44 1 0.2702 -4.8584 -0.0197 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981523336.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:17 Heat of formation + Delta-G solvation = -66.971594 kcal Electronic energy + Delta-G solvation = -26007.402440 eV Core-core repulsion = 22151.300881 eV Total energy + Delta-G solvation = -3856.101559 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.60849 -40.78536 -39.91903 -39.01512 -36.17907 -34.92423 -34.75954 -32.93398 -32.40390 -31.12983 -30.05456 -29.19613 -25.70398 -24.77341 -24.10130 -23.14470 -22.18195 -21.30499 -21.14305 -20.42539 -20.02041 -19.06589 -18.00849 -17.43891 -17.27422 -16.77920 -16.41937 -16.32263 -15.92330 -15.67514 -15.36945 -15.11115 -15.00456 -14.96272 -14.67799 -14.54476 -14.37552 -14.08151 -13.55376 -13.39197 -13.30779 -12.88835 -12.82215 -12.21557 -12.09453 -11.98566 -11.94179 -11.60832 -11.53784 -11.46961 -11.33829 -10.88706 -10.85084 -10.83086 -10.25508 -9.94152 -9.41687 -8.96402 -7.92136 -5.18969 0.35497 0.77877 1.48426 1.49160 1.58707 1.94329 2.16616 2.18448 2.53469 2.57384 2.59823 3.41425 3.69016 3.83181 3.92882 3.93144 4.07710 4.09628 4.21114 4.33584 4.36771 4.48877 4.59064 4.63358 4.71481 4.79251 4.82451 4.88691 5.07735 5.19395 5.22554 5.27040 5.34831 5.41016 5.50842 5.53958 5.55814 5.59270 5.71220 5.78196 6.25837 6.31543 6.44398 6.73163 7.17320 7.37893 7.39637 8.14000 8.38169 9.31304 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.025707 B = 0.002155 C = 0.002066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.955416 B =12992.657306 C =13548.308510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.075 4.075 3 Si 0.966 3.034 4 H -0.270 1.270 5 H -0.294 1.294 6 H -0.294 1.294 7 C -0.234 4.234 8 H 0.070 0.930 9 N -0.734 5.734 10 C 0.175 3.825 11 H 0.032 0.968 12 C -0.125 4.125 13 C -0.108 4.108 14 C -0.116 4.116 15 C 0.160 3.840 16 H 0.062 0.938 17 N -0.706 5.706 18 C 0.585 3.415 19 O -0.595 6.595 20 C -0.263 4.263 21 C 0.120 3.880 22 N -0.497 5.497 23 H 0.445 0.555 24 C -0.071 4.071 25 C 0.593 3.407 26 N -0.828 5.828 27 O -0.583 6.583 28 C -0.073 4.073 29 C -0.112 4.112 30 H 0.250 0.750 31 H 0.375 0.625 32 H 0.039 0.961 33 H 0.057 0.943 34 H 0.053 0.947 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.056 0.944 38 H 0.415 0.585 39 H 0.233 0.767 40 H 0.416 0.584 41 H 0.417 0.583 42 H 0.127 0.873 43 H 0.063 0.937 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.663 -25.747 -4.549 28.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.267 4.267 3 Si 0.796 3.204 4 H -0.195 1.195 5 H -0.221 1.221 6 H -0.221 1.221 7 C -0.366 4.366 8 H 0.088 0.912 9 N -0.374 5.374 10 C 0.067 3.933 11 H 0.050 0.950 12 C -0.166 4.166 13 C -0.146 4.146 14 C -0.154 4.154 15 C 0.054 3.946 16 H 0.081 0.919 17 N -0.356 5.356 18 C 0.375 3.625 19 O -0.477 6.477 20 C -0.273 4.273 21 C -0.024 4.024 22 N -0.094 5.094 23 H 0.288 0.712 24 C -0.182 4.182 25 C 0.380 3.620 26 N -0.392 5.392 27 O -0.462 6.462 28 C -0.099 4.099 29 C -0.151 4.151 30 H 0.059 0.941 31 H 0.207 0.793 32 H 0.058 0.942 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.075 0.925 38 H 0.252 0.748 39 H 0.249 0.751 40 H 0.247 0.753 41 H 0.250 0.750 42 H 0.145 0.855 43 H 0.081 0.919 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.084 -26.040 -4.759 27.987 hybrid contribution -0.669 1.042 -0.152 1.248 sum -9.753 -24.998 -4.912 27.279 Atomic orbital electron populations 1.69797 1.06299 1.25794 1.59913 1.25460 0.96390 1.00704 1.04183 0.85170 0.78212 0.80384 0.76620 1.19464 1.22129 1.22111 1.19608 0.91273 0.85379 1.40347 0.91166 1.42555 1.05481 1.00695 1.88646 1.20315 0.93890 0.84896 0.94246 0.94951 1.22088 0.99695 0.96183 0.98594 1.21420 0.98088 0.93970 1.01159 1.21807 1.00535 0.98024 0.95057 1.20698 0.93752 0.85973 0.94168 0.91939 1.45693 1.10896 1.19836 1.59215 1.17778 0.86842 0.81388 0.76527 1.90760 1.16609 1.79551 1.60748 1.19551 0.94086 0.98851 1.14788 1.23075 0.93992 0.90306 0.95041 1.41577 1.08967 1.15776 1.43083 0.71205 1.19700 0.87426 0.96983 1.14084 1.17128 0.84383 0.83130 0.77401 1.43455 1.07315 1.26290 1.62188 1.90901 1.33662 1.64843 1.56843 1.21066 0.98245 0.93393 0.97227 1.21841 0.99154 0.92587 1.01488 0.94102 0.79274 0.94221 0.92451 0.92770 0.90714 0.90265 0.92481 0.74799 0.75108 0.75322 0.74999 0.85519 0.91864 0.90009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.89 13.06 21.65 0.28 -57.61 16 2 C -0.08 -4.27 5.50 84.86 0.47 -3.80 16 3 Si 0.97 46.09 29.55 68.60 2.03 48.11 16 4 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 5 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 6 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 7 C -0.23 -12.86 9.93 84.03 0.83 -12.02 16 8 H 0.07 3.79 7.83 -2.91 -0.02 3.77 16 9 N -0.73 -35.74 5.12 -322.96 -1.65 -37.39 16 10 C 0.18 6.68 2.77 44.99 0.12 6.80 16 11 H 0.03 1.34 8.08 -2.39 -0.02 1.32 16 12 C -0.13 -4.28 5.50 30.59 0.17 -4.12 16 13 C -0.11 -2.98 5.92 30.60 0.18 -2.80 16 14 C -0.12 -2.92 5.49 30.60 0.17 -2.75 16 15 C 0.16 4.24 2.45 44.97 0.11 4.35 16 16 H 0.06 2.03 7.58 -2.39 -0.02 2.01 16 17 N -0.71 -14.71 5.07 -445.93 -2.26 -16.97 16 18 C 0.58 15.36 7.77 86.65 0.67 16.04 16 19 O -0.60 -21.87 16.58 -4.04 -0.07 -21.94 16 20 C -0.26 -5.14 6.13 -20.12 -0.12 -5.26 16 21 C 0.12 0.89 11.43 84.31 0.96 1.85 16 22 N -0.50 -2.36 5.91 -183.36 -1.08 -3.44 16 23 H 0.44 -2.22 8.14 -92.71 -0.75 -2.97 16 24 C -0.07 -1.07 6.99 40.01 0.28 -0.79 16 25 C 0.59 9.69 8.06 86.48 0.70 10.38 16 26 N -0.83 -3.79 8.87 -176.29 -1.56 -5.35 16 27 O -0.58 -15.96 17.69 -4.29 -0.08 -16.04 16 28 C -0.07 -1.67 10.37 22.59 0.23 -1.44 16 29 C -0.11 -3.27 4.85 30.57 0.15 -3.12 16 30 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 31 H 0.38 19.21 7.80 -92.71 -0.72 18.49 16 32 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 33 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.08 1.73 8.14 -2.38 -0.02 1.72 16 37 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.41 5.20 7.51 -92.71 -0.70 4.50 16 39 H 0.23 -0.54 7.44 -2.91 -0.02 -0.56 16 40 H 0.42 -1.53 7.91 -92.71 -0.73 -2.26 16 41 H 0.42 1.23 8.93 -92.71 -0.83 0.40 16 42 H 0.13 3.63 8.06 -2.91 -0.02 3.61 16 43 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 44 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 Total: -1.00 -87.25 369.07 -2.11 -89.36 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: -2.65 Total: 17.94 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: 4.93 Total: 3.33 kcal Atomic # 7 Polarization: -114.48 SS G_CDS: -6.28 Total: -120.76 kcal Atomic # 8 Polarization: -37.83 SS G_CDS: -0.14 Total: -37.98 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.11 kcal Total: -87.25 -2.11 -89.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981523336.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.391 kcal (2) G-P(sol) polarization free energy of solvation -87.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds