Wall clock time and date at job start Tue Mar 31 2020 13:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.32208 * 120.51393 * 2 1 4 4 C 1.31911 * 121.14450 * 180.02562 * 3 2 1 5 5 N 1.31746 * 122.19572 * 359.97438 * 4 3 2 6 6 C 1.32749 * 120.87228 * 359.77302 * 5 4 3 7 7 O 1.35278 * 120.61817 * 180.24472 * 6 5 4 8 8 C 1.39765 * 120.50345 * 180.02562 * 2 1 3 9 9 C 1.47534 * 120.98403 * 359.95044 * 8 2 1 10 10 O 1.21593 * 119.99920 * 90.00153 * 9 8 2 11 11 N 1.34774 * 120.00201 * 270.00042 * 9 8 2 12 12 C 1.46502 * 119.99794 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.50139 * 325.06539 * 12 11 9 14 14 C 1.53039 * 109.52467 * 85.15060 * 12 11 9 15 15 C 1.53033 * 109.53995 * 181.32894 * 14 12 11 16 16 C 1.53197 * 109.31444 * 298.63477 * 15 14 12 17 17 N 1.46925 * 108.77250 * 54.63513 * 16 15 14 18 18 C 1.36940 * 120.63400 * 126.37291 * 17 16 15 19 19 H 1.07997 * 120.00449 * 221.18503 * 18 17 16 20 20 C 1.38818 * 119.99560 * 41.17897 * 18 17 16 21 21 N 1.31620 * 119.99722 * 214.83791 * 20 18 17 22 22 Si 1.86798 * 120.00064 * 34.84267 * 20 18 17 23 23 H 1.48492 * 109.47139 * 84.62851 * 22 20 18 24 24 H 1.48507 * 109.46894 * 204.62664 * 22 20 18 25 25 H 1.48497 * 109.47017 * 324.62461 * 22 20 18 26 26 C 1.46931 * 118.74009 * 306.38857 * 17 16 15 27 27 H 1.08999 * 109.58603 * 293.68343 * 26 17 16 28 28 C 1.52999 * 109.58551 * 173.39733 * 26 17 16 29 29 H 1.09003 * 109.47068 * 269.97523 * 1 2 3 30 30 H 1.09001 * 109.47140 * 29.97311 * 1 2 3 31 31 H 1.09001 * 109.47669 * 149.97092 * 1 2 3 32 32 H 1.08003 * 118.90051 * 180.02562 * 4 3 2 33 33 H 0.96700 * 113.99972 * 270.23818 * 7 6 5 34 34 H 0.97001 * 119.99732 * 0.02562 * 11 9 8 35 35 H 1.09005 * 109.45942 * 61.30901 * 14 12 11 36 36 H 1.08994 * 109.45885 * 301.35383 * 14 12 11 37 37 H 1.09000 * 109.49985 * 178.68196 * 15 14 12 38 38 H 1.09003 * 109.49975 * 58.58608 * 15 14 12 39 39 H 1.08997 * 109.58968 * 174.42136 * 16 15 14 40 40 H 1.08994 * 109.58834 * 294.70726 * 16 15 14 41 41 H 0.96997 * 120.00052 * 179.97438 * 21 20 18 42 42 H 1.09001 * 109.47212 * 60.00551 * 28 26 17 43 43 H 1.09005 * 109.46761 * 179.97438 * 28 26 17 44 44 H 1.08996 * 109.47377 * 300.00064 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1783 1.1390 0.0000 4 6 3.4973 1.1535 -0.0005 5 7 4.2115 0.0464 -0.0005 6 6 3.6233 -1.1436 0.0045 7 8 4.3616 -2.2771 0.0094 8 6 2.2164 -1.2042 -0.0005 9 6 1.5122 -2.5006 0.0000 10 8 1.2212 -3.0348 -1.0528 11 7 1.1913 -3.0928 1.1674 12 6 0.4915 -4.3799 1.1678 13 1 -0.2000 -4.4183 0.3261 14 6 1.5097 -5.5157 1.0447 15 6 0.7768 -6.8587 1.0118 16 6 0.0007 -7.0447 2.3195 17 7 -0.8768 -5.8831 2.5178 18 6 -2.2182 -6.0511 2.7359 19 1 -2.9295 -5.3930 2.2592 20 6 -2.6637 -7.0676 3.5698 21 7 -3.7921 -7.6905 3.3031 22 14 -1.6620 -7.5512 5.0705 23 1 -2.0038 -6.6546 6.2037 24 1 -1.9708 -8.9560 5.4400 25 1 -0.2150 -7.4276 4.7604 26 6 -0.2878 -4.5376 2.4773 27 1 0.3863 -4.4082 3.3240 28 6 -1.3998 -3.4888 2.5419 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3633 0.8902 -0.5134 31 1 -0.3634 -0.8897 -0.5143 32 1 4.0088 2.1047 -0.0001 33 1 4.5795 -2.6084 -0.8726 34 1 1.4231 -2.6664 2.0072 35 1 2.1856 -5.4917 1.8996 36 1 2.0825 -5.3919 0.1257 37 1 1.5010 -7.6658 0.9006 38 1 0.0826 -6.8739 0.1715 39 1 -0.6011 -7.9516 2.2615 40 1 0.7003 -7.1230 3.1516 41 1 -4.1033 -8.4010 3.8855 42 1 -1.9610 -3.6108 3.4684 43 1 -0.9608 -2.4915 2.5122 44 1 -2.0698 -3.6167 1.6918 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993722607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:13 Heat of formation + Delta-G solvation = -5.154935 kcal Electronic energy + Delta-G solvation = -27942.453877 eV Core-core repulsion = 24089.032889 eV Total energy + Delta-G solvation = -3853.420988 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.71529 -39.70737 -38.12102 -37.80632 -34.54898 -34.44466 -32.84653 -32.29059 -31.70284 -29.98844 -28.89808 -26.56374 -25.42561 -24.83770 -23.19457 -22.51787 -20.90194 -20.59785 -19.76815 -19.26347 -18.39448 -17.77572 -16.73277 -16.50921 -16.04192 -15.43865 -15.01239 -14.63897 -14.48857 -14.41314 -14.19061 -13.72117 -13.68180 -13.47611 -13.19663 -13.08416 -12.90568 -12.55802 -12.38912 -11.99729 -11.93101 -11.60538 -11.44790 -11.22761 -10.80133 -10.72417 -10.63391 -10.46451 -10.41504 -10.25717 -9.98092 -9.81772 -9.73517 -9.70075 -9.54886 -8.89059 -8.40318 -6.79924 -6.13291 -3.45139 0.22959 0.51535 2.37525 2.87517 3.03411 3.30048 3.36607 3.47593 3.52033 3.59909 3.86793 4.40567 4.53121 4.58757 4.79421 4.88354 4.95874 5.20123 5.23627 5.30576 5.34537 5.39709 5.56784 5.57420 5.73821 5.85843 5.87812 6.03036 6.17849 6.27123 6.28977 6.38680 6.43544 6.47898 6.51602 6.55977 6.81310 6.86809 6.92599 6.96314 7.05296 7.48106 7.59535 7.97250 8.11232 8.36674 8.93264 9.65776 10.13215 11.01800 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.022199 B = 0.003512 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.015219 B = 7970.438321 C = 8469.195016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.229 3.771 3 N -0.526 5.526 4 C 0.333 3.667 5 N -0.543 5.543 6 C 0.398 3.602 7 O -0.469 6.469 8 C -0.248 4.248 9 C 0.577 3.423 10 O -0.529 6.529 11 N -0.702 5.702 12 C 0.131 3.869 13 H 0.092 0.908 14 C -0.117 4.117 15 C -0.134 4.134 16 C 0.141 3.859 17 N -0.589 5.589 18 C -0.279 4.279 19 H 0.078 0.922 20 C 0.053 3.947 21 N -0.877 5.877 22 Si 0.843 3.157 23 H -0.288 1.288 24 H -0.297 1.297 25 H -0.260 1.260 26 C 0.163 3.837 27 H 0.029 0.971 28 C -0.134 4.134 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.206 0.794 33 H 0.415 0.585 34 H 0.398 0.602 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.025 0.975 41 H 0.264 0.736 42 H 0.067 0.933 43 H 0.037 0.963 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.615 14.643 -5.917 20.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.083 3.917 3 N -0.242 5.242 4 C 0.046 3.954 5 N -0.269 5.269 6 C 0.210 3.790 7 O -0.277 6.277 8 C -0.257 4.257 9 C 0.360 3.640 10 O -0.405 6.405 11 N -0.351 5.351 12 C 0.026 3.974 13 H 0.110 0.890 14 C -0.156 4.156 15 C -0.173 4.173 16 C 0.015 3.985 17 N -0.313 5.313 18 C -0.406 4.406 19 H 0.095 0.905 20 C -0.150 4.150 21 N -0.515 5.515 22 Si 0.670 3.330 23 H -0.215 1.215 24 H -0.223 1.223 25 H -0.185 1.185 26 C 0.056 3.944 27 H 0.047 0.953 28 C -0.192 4.192 29 H 0.115 0.885 30 H 0.111 0.889 31 H 0.107 0.893 32 H 0.222 0.778 33 H 0.276 0.724 34 H 0.232 0.768 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.043 0.957 41 H 0.074 0.926 42 H 0.086 0.914 43 H 0.056 0.944 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 13.662 14.912 -6.038 21.106 hybrid contribution 0.543 -1.008 0.958 1.493 sum 14.205 13.904 -5.080 20.516 Atomic orbital electron populations 1.20974 0.86676 1.05145 1.04699 1.21867 0.97885 0.85920 0.86027 1.68313 1.10153 1.29447 1.16295 1.24974 0.86299 0.96105 0.88025 1.68060 1.42679 0.98700 1.17418 1.19397 0.85557 0.85956 0.88101 1.84632 1.72481 1.35895 1.34720 1.21897 0.95053 0.97217 1.11576 1.17490 0.78688 0.83158 0.84702 1.90844 1.53917 1.64696 1.31091 1.46114 1.58306 1.23042 1.07628 1.21838 0.93563 0.80108 1.01933 0.88961 1.21757 0.97660 0.95203 1.00981 1.22036 0.98982 0.95384 1.00949 1.21353 0.92770 0.91325 0.93024 1.44270 1.05562 0.98542 1.82957 1.18558 0.80687 1.17173 1.24219 0.90492 1.25559 0.94965 0.96756 0.97720 1.70077 1.23903 1.21215 1.36351 0.87378 0.82396 0.76629 0.86609 1.21513 1.22346 1.18497 1.20707 0.93694 0.88029 0.92007 0.95306 1.21788 0.98563 0.95365 1.03455 0.88522 0.88930 0.89329 0.77783 0.72428 0.76833 0.92581 0.92684 0.92624 0.91664 0.91287 0.95690 0.92613 0.91439 0.94425 0.92238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.08 9.85 36.00 0.35 -0.73 16 2 C 0.23 2.48 6.86 -81.86 -0.56 1.92 16 3 N -0.53 -5.41 10.36 -10.53 -0.11 -5.52 16 4 C 0.33 3.02 12.27 -92.10 -1.13 1.89 16 5 N -0.54 -5.90 10.45 -14.32 -0.15 -6.05 16 6 C 0.40 4.56 7.85 -16.18 -0.13 4.43 16 7 O -0.47 -4.91 13.10 -17.53 -0.23 -5.14 16 8 C -0.25 -2.95 5.67 -104.56 -0.59 -3.55 16 9 C 0.58 7.99 5.48 -12.47 -0.07 7.92 16 10 O -0.53 -9.10 16.77 5.28 0.09 -9.01 16 11 N -0.70 -9.40 4.58 -54.73 -0.25 -9.65 16 12 C 0.13 2.13 1.99 -67.81 -0.14 2.00 16 13 H 0.09 1.74 7.58 -51.93 -0.39 1.35 16 14 C -0.12 -1.89 5.46 -26.69 -0.15 -2.03 16 15 C -0.13 -2.34 6.08 -26.61 -0.16 -2.50 16 16 C 0.14 2.92 4.59 -3.71 -0.02 2.90 16 17 N -0.59 -13.09 2.47 -164.77 -0.41 -13.49 16 18 C -0.28 -7.26 8.42 -15.06 -0.13 -7.38 16 19 H 0.08 2.15 6.83 -52.49 -0.36 1.79 16 20 C 0.05 1.45 4.82 -17.43 -0.08 1.37 16 21 N -0.88 -25.52 13.97 55.49 0.78 -24.75 16 22 Si 0.84 20.64 27.39 -169.99 -4.66 15.98 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.30 -7.40 7.11 56.52 0.40 -7.00 16 25 H -0.26 -6.10 5.24 56.52 0.30 -5.80 16 26 C 0.16 2.96 3.03 -67.59 -0.21 2.76 16 27 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 28 C -0.13 -2.30 7.95 37.16 0.30 -2.00 16 29 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.09 0.93 7.18 -51.93 -0.37 0.56 16 32 H 0.21 1.04 8.06 -52.48 -0.42 0.61 16 33 H 0.41 2.63 9.06 45.56 0.41 3.04 16 34 H 0.40 4.62 8.59 -40.82 -0.35 4.27 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.07 1.56 7.01 -51.93 -0.36 1.20 16 40 H 0.03 0.52 6.71 -51.93 -0.35 0.17 16 41 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 42 H 0.07 1.26 7.68 -51.93 -0.40 0.87 16 43 H 0.04 0.51 7.80 -51.93 -0.41 0.10 16 44 H 0.06 1.10 7.42 -51.93 -0.39 0.71 16 LS Contribution 358.10 15.07 5.40 5.40 Total: -1.00 -32.43 358.10 -7.83 -40.27 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -5.59 Total: 4.95 kcal Atomic # 6 Polarization: 9.71 SS G_CDS: -2.71 Total: 7.00 kcal Atomic # 7 Polarization: -59.32 SS G_CDS: -0.14 Total: -59.46 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: -0.14 Total: -14.14 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -4.66 Total: 15.98 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.43 -7.83 -40.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993722607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.114 kcal (2) G-P(sol) polarization free energy of solvation -32.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds