Wall clock time and date at job start Tue Mar 31 2020 13:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.32208 * 120.51393 * 2 1 4 4 C 1.31911 * 121.14450 * 180.02562 * 3 2 1 5 5 N 1.31746 * 122.19572 * 359.97438 * 4 3 2 6 6 C 1.32749 * 120.87228 * 359.77302 * 5 4 3 7 7 O 1.35278 * 120.61817 * 180.24472 * 6 5 4 8 8 C 1.39765 * 120.50345 * 180.02562 * 2 1 3 9 9 C 1.47534 * 120.98403 * 359.95044 * 8 2 1 10 10 O 1.21593 * 119.99920 * 90.00153 * 9 8 2 11 11 N 1.34774 * 120.00201 * 270.00042 * 9 8 2 12 12 C 1.46502 * 119.99794 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.50139 * 325.06539 * 12 11 9 14 14 C 1.53039 * 109.52467 * 85.15060 * 12 11 9 15 15 C 1.53033 * 109.53995 * 181.32894 * 14 12 11 16 16 C 1.53197 * 109.31444 * 298.63477 * 15 14 12 17 17 N 1.46925 * 108.77250 * 54.63513 * 16 15 14 18 18 C 1.36940 * 120.63400 * 126.37291 * 17 16 15 19 19 H 1.07997 * 120.00449 * 221.18503 * 18 17 16 20 20 C 1.38818 * 119.99560 * 41.17897 * 18 17 16 21 21 N 1.31620 * 119.99722 * 214.83791 * 20 18 17 22 22 Si 1.86798 * 120.00064 * 34.84267 * 20 18 17 23 23 H 1.48492 * 109.47139 * 84.62851 * 22 20 18 24 24 H 1.48507 * 109.46894 * 204.62664 * 22 20 18 25 25 H 1.48497 * 109.47017 * 324.62461 * 22 20 18 26 26 C 1.46931 * 118.74009 * 306.38857 * 17 16 15 27 27 H 1.08999 * 109.58603 * 293.68343 * 26 17 16 28 28 C 1.52999 * 109.58551 * 173.39733 * 26 17 16 29 29 H 1.09003 * 109.47068 * 269.97523 * 1 2 3 30 30 H 1.09001 * 109.47140 * 29.97311 * 1 2 3 31 31 H 1.09001 * 109.47669 * 149.97092 * 1 2 3 32 32 H 1.08003 * 118.90051 * 180.02562 * 4 3 2 33 33 H 0.96700 * 113.99972 * 270.23818 * 7 6 5 34 34 H 0.97001 * 119.99732 * 0.02562 * 11 9 8 35 35 H 1.09005 * 109.45942 * 61.30901 * 14 12 11 36 36 H 1.08994 * 109.45885 * 301.35383 * 14 12 11 37 37 H 1.09000 * 109.49985 * 178.68196 * 15 14 12 38 38 H 1.09003 * 109.49975 * 58.58608 * 15 14 12 39 39 H 1.08997 * 109.58968 * 174.42136 * 16 15 14 40 40 H 1.08994 * 109.58834 * 294.70726 * 16 15 14 41 41 H 0.96997 * 120.00052 * 179.97438 * 21 20 18 42 42 H 1.09001 * 109.47212 * 60.00551 * 28 26 17 43 43 H 1.09005 * 109.46761 * 179.97438 * 28 26 17 44 44 H 1.08996 * 109.47377 * 300.00064 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1783 1.1390 0.0000 4 6 3.4973 1.1535 -0.0005 5 7 4.2115 0.0464 -0.0005 6 6 3.6233 -1.1436 0.0045 7 8 4.3616 -2.2771 0.0094 8 6 2.2164 -1.2042 -0.0005 9 6 1.5122 -2.5006 0.0000 10 8 1.2212 -3.0348 -1.0528 11 7 1.1913 -3.0928 1.1674 12 6 0.4915 -4.3799 1.1678 13 1 -0.2000 -4.4183 0.3261 14 6 1.5097 -5.5157 1.0447 15 6 0.7768 -6.8587 1.0118 16 6 0.0007 -7.0447 2.3195 17 7 -0.8768 -5.8831 2.5178 18 6 -2.2182 -6.0511 2.7359 19 1 -2.9295 -5.3930 2.2592 20 6 -2.6637 -7.0676 3.5698 21 7 -3.7921 -7.6905 3.3031 22 14 -1.6620 -7.5512 5.0705 23 1 -2.0038 -6.6546 6.2037 24 1 -1.9708 -8.9560 5.4400 25 1 -0.2150 -7.4276 4.7604 26 6 -0.2878 -4.5376 2.4773 27 1 0.3863 -4.4082 3.3240 28 6 -1.3998 -3.4888 2.5419 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3633 0.8902 -0.5134 31 1 -0.3634 -0.8897 -0.5143 32 1 4.0088 2.1047 -0.0001 33 1 4.5795 -2.6084 -0.8726 34 1 1.4231 -2.6664 2.0072 35 1 2.1856 -5.4917 1.8996 36 1 2.0825 -5.3919 0.1257 37 1 1.5010 -7.6658 0.9006 38 1 0.0826 -6.8739 0.1715 39 1 -0.6011 -7.9516 2.2615 40 1 0.7003 -7.1230 3.1516 41 1 -4.1033 -8.4010 3.8855 42 1 -1.9610 -3.6108 3.4684 43 1 -0.9608 -2.4915 2.5122 44 1 -2.0698 -3.6167 1.6918 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993722607.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:13 Heat of formation + Delta-G solvation = -30.668623 kcal Electronic energy + Delta-G solvation = -27943.560234 eV Core-core repulsion = 24089.032889 eV Total energy + Delta-G solvation = -3854.527344 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.54764 -40.90754 -39.29091 -38.84822 -35.92922 -35.34039 -34.43427 -33.51986 -33.12213 -31.44326 -29.73996 -28.00664 -26.76660 -26.20696 -24.10270 -23.86727 -22.36112 -21.83350 -21.29761 -20.02629 -19.21022 -18.97994 -18.28907 -17.63680 -17.25746 -16.73378 -16.26188 -16.08324 -15.71894 -15.60450 -15.31337 -15.23065 -14.91223 -14.67338 -14.43500 -14.34700 -13.88741 -13.76175 -13.70561 -13.41061 -13.13970 -13.00011 -12.72838 -12.63112 -12.47117 -12.37869 -12.03807 -11.86091 -11.75711 -11.54835 -11.49020 -11.31771 -11.05602 -10.65818 -10.54620 -10.48035 -10.11115 -8.65141 -8.23438 -5.50990 -0.55932 -0.27779 1.30475 1.40140 1.47671 1.55242 1.95015 2.13312 2.48851 2.49829 2.88970 2.96815 3.11954 3.35413 3.55266 3.77087 3.86467 3.97481 4.08730 4.14370 4.21756 4.29750 4.43505 4.55251 4.57906 4.61748 4.73568 4.76391 4.88585 4.93839 5.00285 5.08252 5.10560 5.16585 5.20078 5.24880 5.36565 5.49189 5.59427 5.65471 5.95655 6.28278 6.28800 6.38725 6.84114 6.99813 7.05728 7.66660 8.16083 8.96201 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.022199 B = 0.003512 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.015219 B = 7970.438321 C = 8469.195016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.230 3.770 3 N -0.533 5.533 4 C 0.340 3.660 5 N -0.556 5.556 6 C 0.400 3.600 7 O -0.478 6.478 8 C -0.264 4.264 9 C 0.587 3.413 10 O -0.565 6.565 11 N -0.692 5.692 12 C 0.146 3.854 13 H 0.063 0.937 14 C -0.111 4.111 15 C -0.125 4.125 16 C 0.137 3.863 17 N -0.603 5.603 18 C -0.260 4.260 19 H 0.045 0.955 20 C 0.002 3.998 21 N -0.928 5.928 22 Si 0.904 3.096 23 H -0.292 1.292 24 H -0.304 1.304 25 H -0.240 1.240 26 C 0.160 3.840 27 H 0.048 0.952 28 C -0.127 4.127 29 H 0.110 0.890 30 H 0.105 0.895 31 H 0.072 0.928 32 H 0.244 0.756 33 H 0.430 0.570 34 H 0.411 0.589 35 H 0.071 0.929 36 H 0.060 0.940 37 H 0.082 0.918 38 H 0.046 0.954 39 H 0.043 0.957 40 H 0.035 0.965 41 H 0.263 0.737 42 H 0.048 0.952 43 H 0.077 0.923 44 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.549 16.542 -5.369 24.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.084 3.916 3 N -0.249 5.249 4 C 0.054 3.946 5 N -0.281 5.281 6 C 0.211 3.789 7 O -0.289 6.289 8 C -0.274 4.274 9 C 0.372 3.628 10 O -0.444 6.444 11 N -0.341 5.341 12 C 0.040 3.960 13 H 0.081 0.919 14 C -0.149 4.149 15 C -0.165 4.165 16 C 0.012 3.988 17 N -0.328 5.328 18 C -0.390 4.390 19 H 0.063 0.937 20 C -0.198 4.198 21 N -0.569 5.569 22 Si 0.730 3.270 23 H -0.219 1.219 24 H -0.232 1.232 25 H -0.164 1.164 26 C 0.054 3.946 27 H 0.065 0.935 28 C -0.185 4.185 29 H 0.129 0.871 30 H 0.124 0.876 31 H 0.090 0.910 32 H 0.260 0.740 33 H 0.294 0.706 34 H 0.247 0.753 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.101 0.899 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.053 0.947 41 H 0.072 0.928 42 H 0.067 0.933 43 H 0.096 0.904 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 16.657 16.844 -5.486 24.317 hybrid contribution -0.339 -1.486 0.684 1.671 sum 16.318 15.358 -4.802 22.918 Atomic orbital electron populations 1.21010 0.85909 1.04975 1.05511 1.22084 0.98521 0.85808 0.85200 1.68419 1.10746 1.28868 1.16882 1.25803 0.86064 0.97022 0.85756 1.68183 1.42835 0.98827 1.18250 1.19492 0.85426 0.86473 0.87462 1.84580 1.72306 1.35767 1.36227 1.21672 0.95270 0.96264 1.14148 1.17661 0.77821 0.83451 0.83904 1.90829 1.55342 1.65865 1.32386 1.45888 1.57809 1.22043 1.08370 1.21389 0.93316 0.81816 0.99512 0.91853 1.21701 0.97410 0.93894 1.01930 1.21919 0.98954 0.97415 0.98208 1.21376 0.92506 0.89842 0.95054 1.44387 1.04552 1.00711 1.83135 1.18429 0.82247 1.15633 1.22665 0.93695 1.26051 0.96108 0.97521 1.00070 1.70173 1.26382 1.22789 1.37598 0.86408 0.82074 0.75555 0.82927 1.21920 1.23160 1.16364 1.20872 0.94265 0.85989 0.93502 0.93455 1.21711 0.97963 0.97356 1.01422 0.87134 0.87606 0.90961 0.74030 0.70591 0.75330 0.90988 0.92110 0.89906 0.93481 0.93828 0.94683 0.92845 0.93327 0.90449 0.94419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.95 9.85 71.23 0.70 -1.24 16 2 C 0.23 4.50 6.86 42.87 0.29 4.80 16 3 N -0.53 -9.51 10.36 -187.22 -1.94 -11.45 16 4 C 0.34 5.10 12.27 180.86 2.22 7.32 16 5 N -0.56 -10.57 10.45 -312.04 -3.26 -13.83 16 6 C 0.40 8.27 7.85 85.19 0.67 8.94 16 7 O -0.48 -8.95 13.10 -85.63 -1.12 -10.07 16 8 C -0.26 -5.79 5.67 -19.83 -0.11 -5.90 16 9 C 0.59 15.42 5.48 86.70 0.48 15.90 16 10 O -0.57 -19.15 16.77 -4.01 -0.07 -19.21 16 11 N -0.69 -17.07 4.58 -445.32 -2.04 -19.11 16 12 C 0.15 4.55 1.99 45.07 0.09 4.64 16 13 H 0.06 2.40 7.58 -2.39 -0.02 2.38 16 14 C -0.11 -3.30 5.46 30.62 0.17 -3.14 16 15 C -0.13 -4.19 6.08 30.67 0.19 -4.00 16 16 C 0.14 5.54 4.59 86.36 0.40 5.93 16 17 N -0.60 -26.58 2.47 -675.21 -1.67 -28.24 16 18 C -0.26 -13.89 8.42 84.03 0.71 -13.19 16 19 H 0.05 2.65 6.83 -2.91 -0.02 2.63 16 20 C 0.00 0.09 4.82 84.86 0.41 0.50 16 21 N -0.93 -55.94 13.97 21.65 0.30 -55.63 16 22 Si 0.90 43.06 27.39 68.60 1.88 44.93 16 23 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 24 H -0.30 -14.80 7.11 99.48 0.71 -14.09 16 25 H -0.24 -10.48 5.24 99.48 0.52 -9.96 16 26 C 0.16 5.59 3.03 44.98 0.14 5.73 16 27 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 28 C -0.13 -4.27 7.95 71.98 0.57 -3.69 16 29 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.07 1.46 7.18 -2.39 -0.02 1.44 16 32 H 0.24 1.47 8.06 -2.91 -0.02 1.45 16 33 H 0.43 4.65 9.06 -74.06 -0.67 3.98 16 34 H 0.41 8.28 8.59 -92.71 -0.80 7.49 16 35 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 36 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 38 H 0.05 1.73 8.14 -2.39 -0.02 1.72 16 39 H 0.04 1.97 7.01 -2.39 -0.02 1.95 16 40 H 0.04 1.36 6.71 -2.39 -0.02 1.35 16 41 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 42 H 0.05 1.81 7.68 -2.39 -0.02 1.79 16 43 H 0.08 1.93 7.80 -2.38 -0.02 1.92 16 44 H 0.04 1.41 7.42 -2.39 -0.02 1.39 16 Total: -1.00 -71.50 358.10 -1.61 -73.11 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -0.60 Total: 16.92 kcal Atomic # 6 Polarization: 15.68 SS G_CDS: 6.91 Total: 22.59 kcal Atomic # 7 Polarization: -119.66 SS G_CDS: -8.60 Total: -128.27 kcal Atomic # 8 Polarization: -28.10 SS G_CDS: -1.19 Total: -29.29 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 1.88 Total: 44.93 kcal Total: -71.50 -1.61 -73.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993722607.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.443 kcal (2) G-P(sol) polarization free energy of solvation -71.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds