Wall clock time and date at job start Tue Mar 31 2020 13:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.32221 * 120.50776 * 2 1 4 4 C 1.31908 * 121.14571 * 180.02562 * 3 2 1 5 5 N 1.31752 * 122.19069 * 0.02562 * 4 3 2 6 6 C 1.32747 * 120.87827 * 0.02562 * 5 4 3 7 7 O 1.35270 * 120.61934 * 180.02562 * 6 5 4 8 8 C 1.39762 * 120.51364 * 179.72570 * 2 1 3 9 9 C 1.47536 * 120.97795 * 359.97438 * 8 2 1 10 10 O 1.21591 * 119.99781 * 90.00179 * 9 8 2 11 11 N 1.34770 * 120.00091 * 269.99688 * 9 8 2 12 12 C 1.46501 * 119.99911 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.49806 * 324.93643 * 12 11 9 14 14 C 1.53041 * 109.50018 * 85.00398 * 12 11 9 15 15 C 1.53041 * 109.53689 * 58.58382 * 14 12 11 16 16 C 1.53185 * 109.31241 * 61.36725 * 15 14 12 17 17 N 1.46921 * 108.78023 * 305.36590 * 16 15 14 18 18 C 1.36937 * 120.63586 * 233.58932 * 17 16 15 19 19 H 1.07997 * 120.00743 * 150.16323 * 18 17 16 20 20 C 1.38812 * 119.99503 * 330.16992 * 18 17 16 21 21 N 1.31627 * 120.00085 * 344.49115 * 20 18 17 22 22 Si 1.86794 * 120.00103 * 164.49812 * 20 18 17 23 23 H 1.48502 * 109.47464 * 59.99309 * 22 20 18 24 24 H 1.48507 * 109.47423 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.47061 * 299.99201 * 22 20 18 26 26 C 1.46933 * 118.73962 * 53.60354 * 17 16 15 27 27 H 1.09000 * 109.58431 * 66.18059 * 26 17 16 28 28 C 1.52990 * 109.58721 * 186.60828 * 26 17 16 29 29 H 1.08992 * 109.47107 * 89.99719 * 1 2 3 30 30 H 1.08993 * 109.47164 * 329.99754 * 1 2 3 31 31 H 1.09004 * 109.46822 * 210.00050 * 1 2 3 32 32 H 1.07992 * 118.90481 * 179.97438 * 4 3 2 33 33 H 0.96707 * 114.00408 * 90.00021 * 7 6 5 34 34 H 0.97001 * 120.00285 * 0.02562 * 11 9 8 35 35 H 1.08992 * 109.46531 * 178.60667 * 14 12 11 36 36 H 1.09010 * 109.45866 * 298.57954 * 14 12 11 37 37 H 1.09000 * 109.49682 * 181.32152 * 15 14 12 38 38 H 1.09002 * 109.50005 * 301.38475 * 15 14 12 39 39 H 1.09009 * 109.58676 * 65.15306 * 16 15 14 40 40 H 1.09005 * 109.58777 * 185.57391 * 16 15 14 41 41 H 0.96998 * 120.00081 * 180.02562 * 21 20 18 42 42 H 1.09008 * 109.47141 * 179.29230 * 28 26 17 43 43 H 1.08997 * 109.47371 * 299.28573 * 28 26 17 44 44 H 1.08998 * 109.47649 * 59.29334 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1782 1.1392 0.0000 4 6 3.4972 1.1539 -0.0005 5 7 4.2115 0.0467 -0.0015 6 6 3.6235 -1.1434 -0.0026 7 8 4.3619 -2.2767 -0.0031 8 6 2.2166 -1.2040 0.0058 9 6 1.5124 -2.5005 0.0125 10 8 1.2219 -3.0400 -1.0377 11 7 1.1913 -3.0868 1.1827 12 6 0.4916 -4.3739 1.1894 13 1 -0.2013 -4.4157 0.3490 14 6 1.5101 -5.5098 1.0687 15 6 2.5038 -5.4318 2.2300 16 6 1.7502 -5.5968 3.5535 17 7 0.6737 -4.5987 3.6124 18 6 0.5654 -3.7516 4.6828 19 1 0.1435 -2.7662 4.5512 20 6 0.9980 -4.1594 5.9372 21 7 1.2235 -5.4346 6.1731 22 14 1.2600 -2.8987 7.2903 23 1 -0.0176 -2.1927 7.5635 24 1 1.7194 -3.5852 8.5245 25 1 2.2863 -1.9158 6.8591 26 6 -0.2849 -4.5270 2.5011 27 1 -0.8776 -5.4412 2.4703 28 6 -1.2062 -3.3212 2.6955 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3633 0.8899 0.5138 31 1 -0.3633 -0.8900 0.5139 32 1 4.0086 2.1050 -0.0009 33 1 4.5763 -2.6070 0.8801 34 1 1.4228 -2.6563 2.0206 35 1 0.9911 -6.4677 1.0986 36 1 2.0472 -5.4171 0.1246 37 1 3.2428 -6.2268 2.1305 38 1 3.0059 -4.4644 2.2149 39 1 1.3234 -6.5983 3.6085 40 1 2.4366 -5.4436 4.3863 41 1 1.5254 -5.7196 7.0497 42 1 -1.9083 -3.2625 1.8637 43 1 -1.7577 -3.4321 3.6291 44 1 -0.6093 -2.4099 2.7321 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993722612.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:17 Heat of formation + Delta-G solvation = -6.938032 kcal Electronic energy + Delta-G solvation = -28728.506217 eV Core-core repulsion = 24875.007909 eV Total energy + Delta-G solvation = -3853.498309 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.52438 -39.63620 -37.91251 -37.62411 -34.37229 -34.04192 -32.63559 -32.11729 -31.58604 -29.57929 -28.72482 -26.47872 -25.29690 -24.99940 -23.01257 -22.27421 -21.07455 -20.66660 -19.06619 -18.86649 -18.22150 -17.71742 -16.61352 -16.44452 -15.63252 -15.28358 -14.97419 -14.58588 -14.38462 -14.28452 -13.97351 -13.58477 -13.41632 -13.14393 -13.11920 -13.01722 -12.78350 -12.64711 -12.23674 -11.96051 -11.41459 -11.36539 -11.34055 -11.06428 -10.80713 -10.74765 -10.62749 -10.53893 -10.22432 -10.12369 -9.86328 -9.76518 -9.63552 -9.49020 -9.40920 -8.70637 -8.56836 -6.77461 -5.91185 -3.37289 0.43685 0.70538 2.58615 3.06638 3.27456 3.33007 3.34148 3.35576 3.43594 3.76824 4.05591 4.35962 4.70033 4.77097 4.98836 5.12716 5.20649 5.23262 5.34934 5.45378 5.48203 5.50970 5.63610 5.69566 5.85124 5.99558 6.02570 6.11755 6.20827 6.30571 6.43327 6.51740 6.57316 6.62670 6.66616 6.83268 6.85251 6.96017 7.13931 7.26847 7.55735 7.67684 7.77244 7.78124 8.31700 8.36115 9.08025 9.70731 10.28021 11.16639 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012631 B = 0.005007 C = 0.004523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.305671 B = 5590.754629 C = 6189.447600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.226 3.774 3 N -0.527 5.527 4 C 0.332 3.668 5 N -0.543 5.543 6 C 0.399 3.601 7 O -0.468 6.468 8 C -0.244 4.244 9 C 0.572 3.428 10 O -0.533 6.533 11 N -0.690 5.690 12 C 0.133 3.867 13 H 0.079 0.921 14 C -0.122 4.122 15 C -0.138 4.138 16 C 0.171 3.829 17 N -0.585 5.585 18 C -0.260 4.260 19 H 0.069 0.931 20 C 0.009 3.991 21 N -0.898 5.898 22 Si 0.899 3.101 23 H -0.282 1.282 24 H -0.291 1.291 25 H -0.284 1.284 26 C 0.159 3.841 27 H 0.042 0.958 28 C -0.136 4.136 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.205 0.795 33 H 0.414 0.586 34 H 0.409 0.591 35 H 0.064 0.936 36 H 0.052 0.948 37 H 0.048 0.952 38 H 0.049 0.951 39 H 0.019 0.981 40 H 0.085 0.915 41 H 0.255 0.745 42 H 0.040 0.960 43 H 0.064 0.936 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.142 8.096 -9.441 12.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.080 3.920 3 N -0.243 5.243 4 C 0.044 3.956 5 N -0.268 5.268 6 C 0.211 3.789 7 O -0.276 6.276 8 C -0.254 4.254 9 C 0.355 3.645 10 O -0.410 6.410 11 N -0.340 5.340 12 C 0.027 3.973 13 H 0.097 0.903 14 C -0.161 4.161 15 C -0.177 4.177 16 C 0.045 3.955 17 N -0.309 5.309 18 C -0.390 4.390 19 H 0.087 0.913 20 C -0.191 4.191 21 N -0.541 5.541 22 Si 0.728 3.272 23 H -0.209 1.209 24 H -0.216 1.216 25 H -0.211 1.211 26 C 0.051 3.949 27 H 0.059 0.941 28 C -0.194 4.194 29 H 0.111 0.889 30 H 0.110 0.890 31 H 0.104 0.896 32 H 0.221 0.779 33 H 0.275 0.725 34 H 0.245 0.755 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.037 0.963 40 H 0.103 0.897 41 H 0.065 0.935 42 H 0.059 0.941 43 H 0.083 0.917 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.416 8.410 -10.572 13.583 hybrid contribution 0.215 -0.160 1.649 1.671 sum 1.631 8.251 -8.923 12.262 Atomic orbital electron populations 1.20924 0.86922 1.04865 1.04412 1.21807 0.97772 0.86003 0.86385 1.68282 1.10191 1.29442 1.16403 1.24931 0.86294 0.96089 0.88274 1.68042 1.42700 0.98700 1.17363 1.19377 0.85628 0.85907 0.87960 1.84653 1.72490 1.35883 1.34571 1.21851 0.95173 0.97219 1.11108 1.17528 0.78986 0.83272 0.84745 1.90795 1.54164 1.64436 1.31655 1.46041 1.57758 1.22472 1.07770 1.21643 0.93881 0.81662 1.00100 0.90345 1.21778 0.97852 0.97926 0.98498 1.22125 0.97722 1.00124 0.97766 1.20799 0.90132 0.91063 0.93464 1.44149 1.27419 1.40580 1.18752 1.19069 1.39560 0.94257 0.86072 0.91328 1.25101 1.01574 0.95369 0.97016 1.70009 1.48912 1.13152 1.22012 0.86446 0.78232 0.80864 0.81611 1.20858 1.21635 1.21098 1.20733 0.90169 0.96824 0.87132 0.94070 1.21791 0.98518 0.98122 1.00941 0.88858 0.88982 0.89577 0.77871 0.72500 0.75470 0.91708 0.92904 0.93289 0.93247 0.96277 0.89670 0.93499 0.94080 0.91650 0.92920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.21 9.86 36.00 0.35 -0.86 16 2 C 0.23 2.93 6.86 -81.86 -0.56 2.37 16 3 N -0.53 -6.53 10.36 -10.53 -0.11 -6.64 16 4 C 0.33 3.76 12.27 -92.09 -1.13 2.63 16 5 N -0.54 -7.25 10.45 -14.32 -0.15 -7.40 16 6 C 0.40 5.66 7.85 -16.18 -0.13 5.54 16 7 O -0.47 -6.27 13.10 -17.50 -0.23 -6.50 16 8 C -0.24 -3.51 5.67 -104.56 -0.59 -4.10 16 9 C 0.57 9.01 5.47 -12.47 -0.07 8.94 16 10 O -0.53 -10.09 16.77 5.29 0.09 -10.00 16 11 N -0.69 -10.51 3.47 -54.73 -0.19 -10.70 16 12 C 0.13 2.16 2.32 -67.81 -0.16 2.00 16 13 H 0.08 1.28 7.58 -51.93 -0.39 0.89 16 14 C -0.12 -2.00 5.58 -26.69 -0.15 -2.15 16 15 C -0.14 -2.38 5.93 -26.61 -0.16 -2.54 16 16 C 0.17 3.64 5.28 -3.72 -0.02 3.62 16 17 N -0.59 -12.50 2.64 -164.78 -0.44 -12.94 16 18 C -0.26 -6.16 8.58 -15.06 -0.13 -6.29 16 19 H 0.07 1.58 6.23 -52.49 -0.33 1.25 16 20 C 0.01 0.23 4.94 -17.43 -0.09 0.14 16 21 N -0.90 -24.12 11.23 55.49 0.62 -23.49 16 22 Si 0.90 20.13 29.58 -169.99 -5.03 15.10 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 24 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 26 C 0.16 2.88 3.20 -67.60 -0.22 2.66 16 27 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 28 C -0.14 -2.23 7.72 37.15 0.29 -1.94 16 29 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.09 0.95 7.17 -51.93 -0.37 0.58 16 32 H 0.20 1.46 8.06 -52.49 -0.42 1.03 16 33 H 0.41 3.88 9.06 45.56 0.41 4.30 16 34 H 0.41 6.45 7.75 -40.82 -0.32 6.13 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.05 0.88 8.14 -51.92 -0.42 0.46 16 37 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.05 0.83 7.53 -51.93 -0.39 0.44 16 39 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 40 H 0.09 2.06 6.15 -51.93 -0.32 1.74 16 41 H 0.25 6.75 8.31 -40.82 -0.34 6.41 16 42 H 0.04 0.57 8.14 -51.92 -0.42 0.15 16 43 H 0.06 1.18 7.67 -51.93 -0.40 0.78 16 44 H 0.05 0.84 6.37 -51.93 -0.33 0.51 16 LS Contribution 357.46 15.07 5.39 5.39 Total: -1.00 -30.15 357.46 -8.17 -38.33 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -5.38 Total: 8.83 kcal Atomic # 6 Polarization: 12.77 SS G_CDS: -2.75 Total: 10.02 kcal Atomic # 7 Polarization: -60.91 SS G_CDS: -0.26 Total: -61.17 kcal Atomic # 8 Polarization: -16.35 SS G_CDS: -0.14 Total: -16.49 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.03 Total: 15.10 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.15 -8.17 -38.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993722612.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.388 kcal (2) G-P(sol) polarization free energy of solvation -30.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds