Wall clock time and date at job start Tue Mar 31 2020 13:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.32221 * 120.50776 * 2 1 4 4 C 1.31908 * 121.14571 * 180.02562 * 3 2 1 5 5 N 1.31752 * 122.19069 * 0.02562 * 4 3 2 6 6 C 1.32747 * 120.87827 * 0.02562 * 5 4 3 7 7 O 1.35270 * 120.61934 * 180.02562 * 6 5 4 8 8 C 1.39762 * 120.51364 * 179.72570 * 2 1 3 9 9 C 1.47536 * 120.97795 * 359.97438 * 8 2 1 10 10 O 1.21591 * 119.99781 * 90.00179 * 9 8 2 11 11 N 1.34770 * 120.00091 * 269.99688 * 9 8 2 12 12 C 1.46501 * 119.99911 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.49806 * 324.93643 * 12 11 9 14 14 C 1.53041 * 109.50018 * 85.00398 * 12 11 9 15 15 C 1.53041 * 109.53689 * 58.58382 * 14 12 11 16 16 C 1.53185 * 109.31241 * 61.36725 * 15 14 12 17 17 N 1.46921 * 108.78023 * 305.36590 * 16 15 14 18 18 C 1.36937 * 120.63586 * 233.58932 * 17 16 15 19 19 H 1.07997 * 120.00743 * 150.16323 * 18 17 16 20 20 C 1.38812 * 119.99503 * 330.16992 * 18 17 16 21 21 N 1.31627 * 120.00085 * 344.49115 * 20 18 17 22 22 Si 1.86794 * 120.00103 * 164.49812 * 20 18 17 23 23 H 1.48502 * 109.47464 * 59.99309 * 22 20 18 24 24 H 1.48507 * 109.47423 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.47061 * 299.99201 * 22 20 18 26 26 C 1.46933 * 118.73962 * 53.60354 * 17 16 15 27 27 H 1.09000 * 109.58431 * 66.18059 * 26 17 16 28 28 C 1.52990 * 109.58721 * 186.60828 * 26 17 16 29 29 H 1.08992 * 109.47107 * 89.99719 * 1 2 3 30 30 H 1.08993 * 109.47164 * 329.99754 * 1 2 3 31 31 H 1.09004 * 109.46822 * 210.00050 * 1 2 3 32 32 H 1.07992 * 118.90481 * 179.97438 * 4 3 2 33 33 H 0.96707 * 114.00408 * 90.00021 * 7 6 5 34 34 H 0.97001 * 120.00285 * 0.02562 * 11 9 8 35 35 H 1.08992 * 109.46531 * 178.60667 * 14 12 11 36 36 H 1.09010 * 109.45866 * 298.57954 * 14 12 11 37 37 H 1.09000 * 109.49682 * 181.32152 * 15 14 12 38 38 H 1.09002 * 109.50005 * 301.38475 * 15 14 12 39 39 H 1.09009 * 109.58676 * 65.15306 * 16 15 14 40 40 H 1.09005 * 109.58777 * 185.57391 * 16 15 14 41 41 H 0.96998 * 120.00081 * 180.02562 * 21 20 18 42 42 H 1.09008 * 109.47141 * 179.29230 * 28 26 17 43 43 H 1.08997 * 109.47371 * 299.28573 * 28 26 17 44 44 H 1.08998 * 109.47649 * 59.29334 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1782 1.1392 0.0000 4 6 3.4972 1.1539 -0.0005 5 7 4.2115 0.0467 -0.0015 6 6 3.6235 -1.1434 -0.0026 7 8 4.3619 -2.2767 -0.0031 8 6 2.2166 -1.2040 0.0058 9 6 1.5124 -2.5005 0.0125 10 8 1.2219 -3.0400 -1.0377 11 7 1.1913 -3.0868 1.1827 12 6 0.4916 -4.3739 1.1894 13 1 -0.2013 -4.4157 0.3490 14 6 1.5101 -5.5098 1.0687 15 6 2.5038 -5.4318 2.2300 16 6 1.7502 -5.5968 3.5535 17 7 0.6737 -4.5987 3.6124 18 6 0.5654 -3.7516 4.6828 19 1 0.1435 -2.7662 4.5512 20 6 0.9980 -4.1594 5.9372 21 7 1.2235 -5.4346 6.1731 22 14 1.2600 -2.8987 7.2903 23 1 -0.0176 -2.1927 7.5635 24 1 1.7194 -3.5852 8.5245 25 1 2.2863 -1.9158 6.8591 26 6 -0.2849 -4.5270 2.5011 27 1 -0.8776 -5.4412 2.4703 28 6 -1.2062 -3.3212 2.6955 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3633 0.8899 0.5138 31 1 -0.3633 -0.8900 0.5139 32 1 4.0086 2.1050 -0.0009 33 1 4.5763 -2.6070 0.8801 34 1 1.4228 -2.6563 2.0206 35 1 0.9911 -6.4677 1.0986 36 1 2.0472 -5.4171 0.1246 37 1 3.2428 -6.2268 2.1305 38 1 3.0059 -4.4644 2.2149 39 1 1.3234 -6.5983 3.6085 40 1 2.4366 -5.4436 4.3863 41 1 1.5254 -5.7196 7.0497 42 1 -1.9083 -3.2625 1.8637 43 1 -1.7577 -3.4321 3.6291 44 1 -0.6093 -2.4099 2.7321 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993722612.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:16 Heat of formation + Delta-G solvation = -28.731459 kcal Electronic energy + Delta-G solvation = -28729.451251 eV Core-core repulsion = 24875.007909 eV Total energy + Delta-G solvation = -3854.443343 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.53111 -40.94142 -39.12344 -38.85752 -35.63003 -35.33439 -34.06777 -33.47794 -32.91421 -31.08777 -29.69815 -27.92984 -26.85984 -26.20889 -23.99960 -23.78072 -22.45718 -22.09972 -20.33619 -20.03678 -19.22684 -18.92128 -18.26973 -17.48169 -17.11139 -16.65327 -16.19492 -15.91946 -15.69755 -15.59542 -15.32226 -14.98796 -14.59818 -14.56407 -14.40001 -14.21079 -13.89331 -13.71574 -13.55506 -13.11927 -12.96447 -12.86163 -12.68705 -12.46421 -12.43055 -12.34656 -12.16860 -11.94471 -11.65661 -11.47981 -11.37193 -11.07380 -10.99324 -10.65949 -10.51352 -10.47738 -10.00915 -8.58938 -7.81019 -5.27309 -0.53619 -0.26846 1.37213 1.49629 1.51884 1.56562 2.06271 2.19375 2.46286 2.53841 2.90732 3.13950 3.35565 3.56955 3.61147 3.78749 4.00726 4.07630 4.10501 4.22075 4.23553 4.41262 4.55163 4.59466 4.64691 4.69110 4.78381 4.89902 4.98064 5.01511 5.04980 5.14422 5.17413 5.24718 5.37064 5.48286 5.55214 5.60010 5.66161 5.75943 5.81826 6.26982 6.45368 6.50433 6.84343 7.10187 7.21409 7.91288 8.44358 9.25233 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012631 B = 0.005007 C = 0.004523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.305671 B = 5590.754629 C = 6189.447600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.227 3.773 3 N -0.532 5.532 4 C 0.336 3.664 5 N -0.557 5.557 6 C 0.393 3.607 7 O -0.479 6.479 8 C -0.265 4.265 9 C 0.585 3.415 10 O -0.566 6.566 11 N -0.682 5.682 12 C 0.143 3.857 13 H 0.085 0.915 14 C -0.117 4.117 15 C -0.124 4.124 16 C 0.179 3.821 17 N -0.595 5.595 18 C -0.246 4.246 19 H 0.080 0.920 20 C -0.046 4.046 21 N -0.934 5.934 22 Si 0.953 3.047 23 H -0.278 1.278 24 H -0.304 1.304 25 H -0.278 1.278 26 C 0.156 3.844 27 H 0.033 0.967 28 C -0.129 4.129 29 H 0.102 0.898 30 H 0.108 0.892 31 H 0.081 0.919 32 H 0.244 0.756 33 H 0.427 0.573 34 H 0.408 0.592 35 H 0.067 0.933 36 H 0.055 0.945 37 H 0.062 0.938 38 H 0.055 0.945 39 H -0.006 1.006 40 H 0.054 0.946 41 H 0.246 0.754 42 H 0.068 0.932 43 H 0.046 0.954 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.033 10.201 -10.608 14.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.080 3.920 3 N -0.248 5.248 4 C 0.050 3.950 5 N -0.283 5.283 6 C 0.206 3.794 7 O -0.290 6.290 8 C -0.274 4.274 9 C 0.369 3.631 10 O -0.445 6.445 11 N -0.331 5.331 12 C 0.037 3.963 13 H 0.103 0.897 14 C -0.155 4.155 15 C -0.163 4.163 16 C 0.053 3.947 17 N -0.319 5.319 18 C -0.376 4.376 19 H 0.097 0.903 20 C -0.241 4.241 21 N -0.580 5.580 22 Si 0.783 3.217 23 H -0.204 1.204 24 H -0.231 1.231 25 H -0.205 1.205 26 C 0.050 3.950 27 H 0.051 0.949 28 C -0.186 4.186 29 H 0.120 0.880 30 H 0.127 0.873 31 H 0.099 0.901 32 H 0.260 0.740 33 H 0.291 0.709 34 H 0.245 0.755 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.074 0.926 39 H 0.012 0.988 40 H 0.072 0.928 41 H 0.055 0.945 42 H 0.087 0.913 43 H 0.065 0.935 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 1.303 10.541 -11.747 15.837 hybrid contribution 0.234 -0.787 1.954 2.120 sum 1.537 9.754 -9.793 13.906 Atomic orbital electron populations 1.21000 0.85478 1.05414 1.05128 1.22173 0.98826 0.85708 0.85253 1.68405 1.10654 1.28913 1.16861 1.25794 0.86200 0.96954 0.86059 1.68145 1.42991 0.98855 1.18268 1.19539 0.85728 0.86387 0.87780 1.84609 1.72459 1.35959 1.35976 1.21751 0.95307 0.96855 1.13532 1.17594 0.78149 0.83400 0.83988 1.90778 1.55559 1.65479 1.32664 1.45928 1.57464 1.21974 1.07754 1.21437 0.93834 0.82144 0.98893 0.89656 1.21728 0.97624 0.98231 0.97933 1.21937 0.97706 1.00994 0.95665 1.20578 0.89822 0.89804 0.94511 1.44322 1.28414 1.40077 1.19041 1.19410 1.37125 0.94760 0.86301 0.90272 1.25721 1.02853 0.96493 0.99065 1.70163 1.51257 1.14775 1.21805 0.85559 0.78137 0.78968 0.79017 1.20429 1.23120 1.20459 1.20861 0.90039 0.97376 0.86756 0.94941 1.21719 0.98481 0.97293 1.01133 0.87956 0.87316 0.90065 0.74002 0.70867 0.75521 0.91413 0.92593 0.91981 0.92583 0.98836 0.92789 0.94519 0.91305 0.93518 0.92407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.12 9.86 71.24 0.70 -1.42 16 2 C 0.23 5.37 6.86 42.87 0.29 5.67 16 3 N -0.53 -11.76 10.36 -187.22 -1.94 -13.70 16 4 C 0.34 6.68 12.27 180.86 2.22 8.90 16 5 N -0.56 -13.73 10.45 -312.06 -3.26 -16.99 16 6 C 0.39 10.56 7.85 85.19 0.67 11.23 16 7 O -0.48 -12.25 13.10 -85.55 -1.12 -13.37 16 8 C -0.27 -7.17 5.67 -19.83 -0.11 -7.28 16 9 C 0.58 17.46 5.47 86.70 0.47 17.94 16 10 O -0.57 -20.56 16.77 -4.00 -0.07 -20.63 16 11 N -0.68 -19.59 3.47 -445.33 -1.54 -21.14 16 12 C 0.14 4.41 2.32 45.07 0.10 4.52 16 13 H 0.09 2.60 7.58 -2.39 -0.02 2.58 16 14 C -0.12 -3.66 5.58 30.62 0.17 -3.49 16 15 C -0.12 -4.17 5.93 30.67 0.18 -3.99 16 16 C 0.18 7.70 5.28 86.36 0.46 8.16 16 17 N -0.59 -25.26 2.64 -675.24 -1.78 -27.05 16 18 C -0.25 -11.53 8.58 84.03 0.72 -10.81 16 19 H 0.08 3.51 6.23 -2.91 -0.02 3.50 16 20 C -0.05 -2.32 4.94 84.86 0.42 -1.90 16 21 N -0.93 -51.59 11.23 21.65 0.24 -51.35 16 22 Si 0.95 41.58 29.58 68.60 2.03 43.61 16 23 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 24 H -0.30 -13.86 7.11 99.48 0.71 -13.16 16 25 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 26 C 0.16 5.48 3.20 44.97 0.14 5.63 16 27 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 28 C -0.13 -3.97 7.72 71.98 0.56 -3.42 16 29 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.08 1.60 7.17 -2.38 -0.02 1.59 16 32 H 0.24 2.56 8.06 -2.91 -0.02 2.53 16 33 H 0.43 7.53 9.06 -74.05 -0.67 6.86 16 34 H 0.41 12.15 7.75 -92.71 -0.72 11.43 16 35 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 37 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.06 1.81 7.53 -2.39 -0.02 1.79 16 39 H -0.01 -0.31 8.14 -2.38 -0.02 -0.33 16 40 H 0.05 2.68 6.15 -2.38 -0.01 2.67 16 41 H 0.25 13.48 8.31 -92.71 -0.77 12.71 16 42 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 43 H 0.05 1.61 7.67 -2.39 -0.02 1.60 16 44 H 0.06 1.71 6.37 -2.39 -0.02 1.70 16 Total: -1.00 -64.73 357.46 -0.78 -65.51 By element: Atomic # 1 Polarization: 25.71 SS G_CDS: -0.34 Total: 25.38 kcal Atomic # 6 Polarization: 22.74 SS G_CDS: 7.00 Total: 29.74 kcal Atomic # 7 Polarization: -121.95 SS G_CDS: -8.29 Total: -130.23 kcal Atomic # 8 Polarization: -32.82 SS G_CDS: -1.19 Total: -34.00 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.61 kcal Total: -64.73 -0.78 -65.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993722612.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.781 kcal (2) G-P(sol) polarization free energy of solvation -64.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds