Wall clock time and date at job start Tue Mar 31 2020 13:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.32217 * 120.51498 * 2 1 4 4 C 1.31911 * 121.14464 * 180.31199 * 3 2 1 5 5 N 1.31748 * 122.19431 * 359.70577 * 4 3 2 6 6 C 1.32746 * 120.87485 * 359.97438 * 5 4 3 7 7 O 1.35283 * 120.61731 * 179.97438 * 6 5 4 8 8 C 1.39768 * 120.50961 * 179.74207 * 2 1 3 9 9 C 1.47542 * 120.97809 * 359.97120 * 8 2 1 10 10 O 1.21587 * 120.00516 * 269.72827 * 9 8 2 11 11 N 1.34774 * 119.99941 * 89.72224 * 9 8 2 12 12 C 1.46498 * 120.00316 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.52128 * 35.08189 * 12 11 9 14 14 C 1.53045 * 109.49791 * 275.00328 * 12 11 9 15 15 C 1.53033 * 109.53858 * 178.68183 * 14 12 11 16 16 C 1.53190 * 109.31353 * 61.36350 * 15 14 12 17 17 N 1.46926 * 108.77649 * 305.36413 * 16 15 14 18 18 C 1.36932 * 120.63134 * 233.58366 * 17 16 15 19 19 H 1.08004 * 120.00137 * 150.44375 * 18 17 16 20 20 C 1.38812 * 120.00574 * 330.44325 * 18 17 16 21 21 N 1.31625 * 119.99349 * 344.28580 * 20 18 17 22 22 Si 1.86793 * 120.00499 * 164.28348 * 20 18 17 23 23 H 1.48494 * 109.47507 * 266.30354 * 22 20 18 24 24 H 1.48502 * 109.47255 * 26.30784 * 22 20 18 25 25 H 1.48503 * 109.47206 * 146.30389 * 22 20 18 26 26 C 1.46920 * 118.73843 * 53.85927 * 17 16 15 27 27 H 1.09008 * 109.58498 * 65.92698 * 26 17 16 28 28 C 1.52998 * 109.58794 * 186.35125 * 26 17 16 29 29 H 1.08998 * 109.46912 * 270.26209 * 1 2 3 30 30 H 1.08999 * 109.46599 * 30.25897 * 1 2 3 31 31 H 1.08998 * 109.47388 * 150.26347 * 1 2 3 32 32 H 1.08000 * 118.89824 * 179.68341 * 4 3 2 33 33 H 0.96692 * 113.99646 * 270.02234 * 7 6 5 34 34 H 0.97005 * 119.99742 * 0.02562 * 11 9 8 35 35 H 1.08996 * 109.45905 * 58.65352 * 14 12 11 36 36 H 1.09004 * 109.44363 * 298.69567 * 14 12 11 37 37 H 1.09002 * 109.50063 * 301.40978 * 15 14 12 38 38 H 1.09003 * 109.52696 * 181.33146 * 15 14 12 39 39 H 1.09004 * 109.58998 * 185.57465 * 16 15 14 40 40 H 1.09006 * 109.70632 * 65.22590 * 16 15 14 41 41 H 0.97006 * 119.99786 * 179.97438 * 21 20 18 42 42 H 1.09000 * 109.47222 * 60.00209 * 28 26 17 43 43 H 1.09006 * 109.47083 * 179.97438 * 28 26 17 44 44 H 1.08993 * 109.47135 * 300.00029 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1783 1.1390 0.0000 4 6 3.4974 1.1535 -0.0061 5 7 4.2115 0.0464 -0.0068 6 6 3.6234 -1.1436 -0.0008 7 8 4.3618 -2.2771 -0.0020 8 6 2.2166 -1.2041 0.0054 9 6 1.5123 -2.5006 0.0119 10 8 1.2269 -3.0323 1.0675 11 7 1.1851 -3.0956 -1.1523 12 6 0.4853 -4.3826 -1.1460 13 1 -0.2036 -4.4184 -0.3021 14 6 1.5045 -5.5176 -1.0219 15 6 0.7723 -6.8608 -0.9821 16 6 -0.0074 -7.0516 -2.2868 17 7 -0.8861 -5.8912 -2.4867 18 6 -2.2279 -6.0607 -2.7013 19 1 -2.9258 -5.2999 -2.3844 20 6 -2.6911 -7.2104 -3.3261 21 7 -1.8541 -7.9848 -3.9836 22 14 -4.5021 -7.6587 -3.2338 23 1 -4.7261 -8.5819 -2.0926 24 1 -5.3078 -6.4265 -3.0392 25 1 -4.9124 -8.3239 -4.4966 26 6 -0.2968 -4.5456 -2.4581 27 1 0.3773 -4.4239 -3.3061 28 6 -1.4087 -3.4971 -2.5285 29 1 -0.3633 0.0047 1.0276 30 1 -0.3632 0.8877 -0.5179 31 1 -0.3634 -0.8923 -0.5097 32 1 4.0088 2.1047 -0.0111 33 1 4.5719 -2.6086 -0.8857 34 1 1.4131 -2.6716 -1.9945 35 1 2.0799 -5.3903 -0.1050 36 1 2.1776 -5.4961 -1.8790 37 1 0.0806 -6.8734 -0.1398 38 1 1.4968 -7.6675 -0.8700 39 1 -0.6087 -7.9587 -2.2240 40 1 0.6881 -7.1316 -3.1224 41 1 -2.1777 -8.7885 -4.4200 42 1 -2.0768 -3.6181 -1.6758 43 1 -0.9694 -2.4997 -2.5067 44 1 -1.9720 -3.6263 -3.4526 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993722619.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:20 Heat of formation + Delta-G solvation = -7.586873 kcal Electronic energy + Delta-G solvation = -27900.573830 eV Core-core repulsion = 24047.047385 eV Total energy + Delta-G solvation = -3853.526445 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.68779 -39.63689 -38.09244 -37.65971 -34.54595 -34.38882 -32.74795 -32.21571 -31.63190 -29.48004 -28.77590 -26.46067 -25.38649 -24.93984 -23.17053 -22.36337 -20.78487 -20.62292 -19.57780 -19.24289 -18.37438 -17.67997 -16.73967 -16.48307 -15.89000 -15.39380 -14.98898 -14.61765 -14.42927 -14.33773 -13.82683 -13.72891 -13.64913 -13.39659 -13.16155 -12.93851 -12.83527 -12.62375 -12.37402 -11.80429 -11.62117 -11.56256 -11.19998 -10.97334 -10.83161 -10.69710 -10.63723 -10.38633 -10.23625 -10.12149 -10.08575 -9.80700 -9.74087 -9.64797 -9.44289 -8.83070 -8.51369 -6.74032 -5.85378 -3.30566 0.26340 0.54077 2.43008 2.89414 3.11295 3.24026 3.34185 3.42118 3.42227 3.61778 3.89287 4.41209 4.50968 4.61288 4.81869 4.97722 5.21652 5.25222 5.30487 5.34841 5.43848 5.51522 5.58330 5.69879 5.87576 5.88603 5.97988 6.12452 6.23655 6.30503 6.43991 6.45986 6.51239 6.61894 6.68366 6.76691 6.90076 6.95874 6.97305 7.33466 7.51248 7.60962 7.62087 7.76285 8.16485 8.38691 9.13848 9.76308 10.32494 11.23114 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.022803 B = 0.003390 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.593090 B = 8257.315669 C = 8997.413449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.228 3.772 3 N -0.526 5.526 4 C 0.333 3.667 5 N -0.543 5.543 6 C 0.398 3.602 7 O -0.466 6.466 8 C -0.247 4.247 9 C 0.574 3.426 10 O -0.519 6.519 11 N -0.709 5.709 12 C 0.129 3.871 13 H 0.089 0.911 14 C -0.117 4.117 15 C -0.140 4.140 16 C 0.169 3.831 17 N -0.581 5.581 18 C -0.255 4.255 19 H 0.071 0.929 20 C 0.006 3.994 21 N -0.901 5.901 22 Si 0.902 3.098 23 H -0.287 1.287 24 H -0.278 1.278 25 H -0.291 1.291 26 C 0.168 3.832 27 H 0.028 0.972 28 C -0.137 4.137 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.206 0.794 33 H 0.412 0.588 34 H 0.396 0.604 35 H 0.051 0.949 36 H 0.054 0.946 37 H 0.057 0.943 38 H 0.052 0.948 39 H 0.087 0.913 40 H 0.019 0.981 41 H 0.254 0.746 42 H 0.055 0.945 43 H 0.037 0.963 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.407 15.052 3.744 18.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.082 3.918 3 N -0.242 5.242 4 C 0.045 3.955 5 N -0.268 5.268 6 C 0.210 3.790 7 O -0.274 6.274 8 C -0.257 4.257 9 C 0.357 3.643 10 O -0.394 6.394 11 N -0.359 5.359 12 C 0.024 3.976 13 H 0.107 0.893 14 C -0.156 4.156 15 C -0.180 4.180 16 C 0.044 3.956 17 N -0.304 5.304 18 C -0.384 4.384 19 H 0.089 0.911 20 C -0.193 4.193 21 N -0.545 5.545 22 Si 0.732 3.268 23 H -0.214 1.214 24 H -0.203 1.203 25 H -0.218 1.218 26 C 0.060 3.940 27 H 0.046 0.954 28 C -0.195 4.195 29 H 0.114 0.886 30 H 0.111 0.889 31 H 0.105 0.895 32 H 0.222 0.778 33 H 0.273 0.727 34 H 0.229 0.771 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.106 0.894 40 H 0.038 0.962 41 H 0.064 0.936 42 H 0.074 0.926 43 H 0.056 0.944 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.573 15.300 4.983 18.723 hybrid contribution -0.804 -1.004 -0.807 1.519 sum 8.769 14.296 4.176 17.283 Atomic orbital electron populations 1.20957 0.86740 1.04893 1.04750 1.21855 0.97844 0.85936 0.86156 1.68307 1.10167 1.29420 1.16328 1.24969 0.86287 0.96100 0.88098 1.68053 1.42651 0.98687 1.17428 1.19386 0.85558 0.85936 0.88150 1.84697 1.72533 1.35865 1.34317 1.21872 0.95125 0.97195 1.11470 1.17514 0.78897 0.83159 0.84771 1.90843 1.53261 1.64439 1.30906 1.46188 1.58978 1.23309 1.07395 1.22009 0.93619 0.79932 1.02008 0.89319 1.21764 0.97651 0.95562 1.00598 1.22178 0.98994 0.94931 1.01868 1.20836 0.91982 0.92082 0.90708 1.44045 1.05056 0.98513 1.82822 1.19174 0.82212 1.04959 1.32072 0.91130 1.25091 0.97573 0.99688 0.96971 1.70032 1.33814 1.15770 1.34864 0.86283 0.85000 0.78432 0.77075 1.21410 1.20340 1.21790 1.20646 0.93443 0.88085 0.91835 0.95446 1.21827 0.98855 0.95808 1.02967 0.88645 0.88902 0.89480 0.77782 0.72722 0.77056 0.92995 0.92735 0.92452 0.92910 0.89433 0.96247 0.93608 0.92559 0.94425 0.91594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.09 9.85 36.01 0.35 -0.73 16 2 C 0.23 2.54 6.86 -81.86 -0.56 1.98 16 3 N -0.53 -5.53 10.36 -10.52 -0.11 -5.64 16 4 C 0.33 3.10 12.27 -92.09 -1.13 1.97 16 5 N -0.54 -6.08 10.45 -14.32 -0.15 -6.23 16 6 C 0.40 4.73 7.85 -16.18 -0.13 4.61 16 7 O -0.47 -5.16 13.10 -17.54 -0.23 -5.39 16 8 C -0.25 -3.05 5.67 -104.56 -0.59 -3.64 16 9 C 0.57 8.25 5.48 -12.47 -0.07 8.18 16 10 O -0.52 -9.71 16.77 5.29 0.09 -9.62 16 11 N -0.71 -9.26 4.60 -54.51 -0.25 -9.51 16 12 C 0.13 2.15 2.01 -67.59 -0.14 2.01 16 13 H 0.09 1.72 7.58 -51.93 -0.39 1.32 16 14 C -0.12 -1.97 5.46 -26.69 -0.15 -2.11 16 15 C -0.14 -2.63 6.08 -26.62 -0.16 -2.80 16 16 C 0.17 3.83 5.28 -3.71 -0.02 3.81 16 17 N -0.58 -13.45 2.98 -164.52 -0.49 -13.95 16 18 C -0.25 -6.51 8.57 -15.06 -0.13 -6.64 16 19 H 0.07 1.77 6.24 -52.48 -0.33 1.44 16 20 C 0.01 0.15 4.93 -17.43 -0.09 0.07 16 21 N -0.90 -25.04 11.23 55.49 0.62 -24.42 16 22 Si 0.90 20.97 29.58 -169.99 -5.03 15.95 16 23 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 C 0.17 3.12 3.05 -67.38 -0.21 2.91 16 27 H 0.03 0.52 8.14 -51.92 -0.42 0.10 16 28 C -0.14 -2.32 7.84 37.16 0.29 -2.03 16 29 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.09 0.86 7.18 -51.93 -0.37 0.49 16 32 H 0.21 1.08 8.06 -52.49 -0.42 0.65 16 33 H 0.41 2.47 9.06 45.56 0.41 2.89 16 34 H 0.40 4.18 8.59 -40.82 -0.35 3.83 16 35 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.09 2.24 6.13 -51.93 -0.32 1.93 16 40 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 42 H 0.06 1.00 7.44 -51.93 -0.39 0.62 16 43 H 0.04 0.50 7.82 -51.93 -0.41 0.09 16 44 H 0.07 1.22 7.62 -51.93 -0.40 0.82 16 LS Contribution 360.76 15.07 5.44 5.44 Total: -1.00 -32.62 360.76 -8.31 -40.92 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -5.48 Total: 4.84 kcal Atomic # 6 Polarization: 10.32 SS G_CDS: -2.72 Total: 7.60 kcal Atomic # 7 Polarization: -59.37 SS G_CDS: -0.38 Total: -59.74 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: -0.14 Total: -15.01 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.03 Total: 15.95 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.62 -8.31 -40.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993722619.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.336 kcal (2) G-P(sol) polarization free energy of solvation -32.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds