Wall clock time and date at job start Tue Mar 31 2020 13:11:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.32217 * 120.51498 * 2 1 4 4 C 1.31911 * 121.14464 * 180.31199 * 3 2 1 5 5 N 1.31748 * 122.19431 * 359.70577 * 4 3 2 6 6 C 1.32746 * 120.87485 * 359.97438 * 5 4 3 7 7 O 1.35283 * 120.61731 * 179.97438 * 6 5 4 8 8 C 1.39768 * 120.50961 * 179.74207 * 2 1 3 9 9 C 1.47542 * 120.97809 * 359.97120 * 8 2 1 10 10 O 1.21587 * 120.00516 * 269.72827 * 9 8 2 11 11 N 1.34774 * 119.99941 * 89.72224 * 9 8 2 12 12 C 1.46498 * 120.00316 * 180.02562 * 11 9 8 13 13 H 1.09000 * 109.52128 * 35.08189 * 12 11 9 14 14 C 1.53045 * 109.49791 * 275.00328 * 12 11 9 15 15 C 1.53033 * 109.53858 * 178.68183 * 14 12 11 16 16 C 1.53190 * 109.31353 * 61.36350 * 15 14 12 17 17 N 1.46926 * 108.77649 * 305.36413 * 16 15 14 18 18 C 1.36932 * 120.63134 * 233.58366 * 17 16 15 19 19 H 1.08004 * 120.00137 * 150.44375 * 18 17 16 20 20 C 1.38812 * 120.00574 * 330.44325 * 18 17 16 21 21 N 1.31625 * 119.99349 * 344.28580 * 20 18 17 22 22 Si 1.86793 * 120.00499 * 164.28348 * 20 18 17 23 23 H 1.48494 * 109.47507 * 266.30354 * 22 20 18 24 24 H 1.48502 * 109.47255 * 26.30784 * 22 20 18 25 25 H 1.48503 * 109.47206 * 146.30389 * 22 20 18 26 26 C 1.46920 * 118.73843 * 53.85927 * 17 16 15 27 27 H 1.09008 * 109.58498 * 65.92698 * 26 17 16 28 28 C 1.52998 * 109.58794 * 186.35125 * 26 17 16 29 29 H 1.08998 * 109.46912 * 270.26209 * 1 2 3 30 30 H 1.08999 * 109.46599 * 30.25897 * 1 2 3 31 31 H 1.08998 * 109.47388 * 150.26347 * 1 2 3 32 32 H 1.08000 * 118.89824 * 179.68341 * 4 3 2 33 33 H 0.96692 * 113.99646 * 270.02234 * 7 6 5 34 34 H 0.97005 * 119.99742 * 0.02562 * 11 9 8 35 35 H 1.08996 * 109.45905 * 58.65352 * 14 12 11 36 36 H 1.09004 * 109.44363 * 298.69567 * 14 12 11 37 37 H 1.09002 * 109.50063 * 301.40978 * 15 14 12 38 38 H 1.09003 * 109.52696 * 181.33146 * 15 14 12 39 39 H 1.09004 * 109.58998 * 185.57465 * 16 15 14 40 40 H 1.09006 * 109.70632 * 65.22590 * 16 15 14 41 41 H 0.97006 * 119.99786 * 179.97438 * 21 20 18 42 42 H 1.09000 * 109.47222 * 60.00209 * 28 26 17 43 43 H 1.09006 * 109.47083 * 179.97438 * 28 26 17 44 44 H 1.08993 * 109.47135 * 300.00029 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1783 1.1390 0.0000 4 6 3.4974 1.1535 -0.0061 5 7 4.2115 0.0464 -0.0068 6 6 3.6234 -1.1436 -0.0008 7 8 4.3618 -2.2771 -0.0020 8 6 2.2166 -1.2041 0.0054 9 6 1.5123 -2.5006 0.0119 10 8 1.2269 -3.0323 1.0675 11 7 1.1851 -3.0956 -1.1523 12 6 0.4853 -4.3826 -1.1460 13 1 -0.2036 -4.4184 -0.3021 14 6 1.5045 -5.5176 -1.0219 15 6 0.7723 -6.8608 -0.9821 16 6 -0.0074 -7.0516 -2.2868 17 7 -0.8861 -5.8912 -2.4867 18 6 -2.2279 -6.0607 -2.7013 19 1 -2.9258 -5.2999 -2.3844 20 6 -2.6911 -7.2104 -3.3261 21 7 -1.8541 -7.9848 -3.9836 22 14 -4.5021 -7.6587 -3.2338 23 1 -4.7261 -8.5819 -2.0926 24 1 -5.3078 -6.4265 -3.0392 25 1 -4.9124 -8.3239 -4.4966 26 6 -0.2968 -4.5456 -2.4581 27 1 0.3773 -4.4239 -3.3061 28 6 -1.4087 -3.4971 -2.5285 29 1 -0.3633 0.0047 1.0276 30 1 -0.3632 0.8877 -0.5179 31 1 -0.3634 -0.8923 -0.5097 32 1 4.0088 2.1047 -0.0111 33 1 4.5719 -2.6086 -0.8857 34 1 1.4131 -2.6716 -1.9945 35 1 2.0799 -5.3903 -0.1050 36 1 2.1776 -5.4961 -1.8790 37 1 0.0806 -6.8734 -0.1398 38 1 1.4968 -7.6675 -0.8700 39 1 -0.6087 -7.9587 -2.2240 40 1 0.6881 -7.1316 -3.1224 41 1 -2.1777 -8.7885 -4.4200 42 1 -2.0768 -3.6181 -1.6758 43 1 -0.9694 -2.4997 -2.5067 44 1 -1.9720 -3.6263 -3.4526 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993722619.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:19 Heat of formation + Delta-G solvation = -32.826338 kcal Electronic energy + Delta-G solvation = -27901.668295 eV Core-core repulsion = 24047.047385 eV Total energy + Delta-G solvation = -3854.620910 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.54783 -40.87125 -39.19511 -38.87230 -35.93728 -35.34954 -34.28154 -33.47844 -32.99557 -30.95794 -29.70496 -27.93921 -26.91560 -26.17850 -24.03784 -23.80917 -22.33776 -21.85627 -21.14123 -20.04164 -19.22686 -18.88459 -18.22774 -17.60136 -17.24497 -16.76365 -16.16882 -15.80577 -15.73337 -15.55933 -15.31466 -15.20739 -14.85644 -14.49849 -14.38655 -14.27733 -13.90862 -13.72340 -13.33415 -13.27286 -13.11767 -12.81862 -12.70111 -12.52432 -12.47339 -12.34655 -11.99265 -11.81313 -11.77673 -11.63764 -11.48614 -11.23503 -10.99603 -10.68087 -10.52138 -10.51537 -10.10927 -8.64119 -7.84658 -5.30745 -0.55122 -0.27484 1.31705 1.47604 1.50628 1.57586 1.93034 2.17219 2.43243 2.54061 2.89242 3.12509 3.31335 3.45771 3.68549 3.77783 3.90445 4.02692 4.09940 4.21359 4.22122 4.37999 4.51366 4.53079 4.62810 4.64628 4.78441 4.88693 4.89143 4.95582 5.04960 5.14183 5.17505 5.19678 5.27825 5.44712 5.49616 5.59249 5.65800 5.72669 5.77909 6.32396 6.40427 6.43554 6.84407 7.05952 7.18046 7.88037 8.39205 9.22106 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.022803 B = 0.003390 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.593090 B = 8257.315669 C = 8997.413449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.230 3.770 3 N -0.532 5.532 4 C 0.340 3.660 5 N -0.556 5.556 6 C 0.399 3.601 7 O -0.480 6.480 8 C -0.265 4.265 9 C 0.586 3.414 10 O -0.565 6.565 11 N -0.692 5.692 12 C 0.147 3.853 13 H 0.062 0.938 14 C -0.109 4.109 15 C -0.130 4.130 16 C 0.176 3.824 17 N -0.600 5.600 18 C -0.252 4.252 19 H 0.074 0.926 20 C -0.047 4.047 21 N -0.933 5.933 22 Si 0.958 3.042 23 H -0.291 1.291 24 H -0.267 1.267 25 H -0.297 1.297 26 C 0.165 3.835 27 H 0.036 0.964 28 C -0.129 4.129 29 H 0.096 0.904 30 H 0.111 0.889 31 H 0.081 0.919 32 H 0.245 0.755 33 H 0.431 0.569 34 H 0.412 0.588 35 H 0.055 0.945 36 H 0.070 0.930 37 H 0.043 0.957 38 H 0.071 0.929 39 H 0.052 0.948 40 H 0.005 0.995 41 H 0.248 0.752 42 H 0.043 0.957 43 H 0.077 0.923 44 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.303 17.581 3.879 20.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.084 3.916 3 N -0.248 5.248 4 C 0.054 3.946 5 N -0.281 5.281 6 C 0.211 3.789 7 O -0.291 6.291 8 C -0.274 4.274 9 C 0.370 3.630 10 O -0.443 6.443 11 N -0.342 5.342 12 C 0.041 3.959 13 H 0.081 0.919 14 C -0.148 4.148 15 C -0.169 4.169 16 C 0.051 3.949 17 N -0.323 5.323 18 C -0.382 4.382 19 H 0.092 0.908 20 C -0.243 4.243 21 N -0.579 5.579 22 Si 0.787 3.213 23 H -0.219 1.219 24 H -0.191 1.191 25 H -0.224 1.224 26 C 0.058 3.942 27 H 0.053 0.947 28 C -0.187 4.187 29 H 0.114 0.886 30 H 0.130 0.870 31 H 0.099 0.901 32 H 0.260 0.740 33 H 0.295 0.705 34 H 0.249 0.751 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.062 0.938 38 H 0.090 0.910 39 H 0.070 0.930 40 H 0.023 0.977 41 H 0.057 0.943 42 H 0.062 0.938 43 H 0.096 0.904 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 10.492 17.877 5.088 21.343 hybrid contribution -1.001 -1.697 -0.837 2.140 sum 9.491 16.180 4.251 19.234 Atomic orbital electron populations 1.21011 0.85802 1.05516 1.04983 1.22101 0.98574 0.85738 0.85189 1.68422 1.10721 1.28810 1.16882 1.25814 0.86086 0.96997 0.85751 1.68175 1.42821 0.98803 1.18312 1.19492 0.85445 0.86440 0.87546 1.84647 1.72405 1.35840 1.36215 1.21649 0.95317 0.96253 1.14214 1.17693 0.77913 0.83438 0.83945 1.90825 1.55131 1.65848 1.32540 1.45884 1.58163 1.22020 1.08176 1.21502 0.93222 0.81563 0.99635 0.91930 1.21685 0.97526 0.94185 1.01414 1.22015 0.98865 0.97091 0.98972 1.20620 0.91355 0.90935 0.92026 1.44277 1.04680 1.00389 1.82993 1.19463 0.83648 1.04646 1.30484 0.90817 1.25742 1.00840 1.00153 0.97538 1.70167 1.35200 1.16126 1.36391 0.85387 0.81358 0.78203 0.76320 1.21861 1.19122 1.22382 1.20814 0.94221 0.86271 0.92869 0.94676 1.21750 0.98105 0.97385 1.01435 0.88582 0.86992 0.90063 0.73966 0.70454 0.75095 0.92644 0.91135 0.93781 0.91028 0.92982 0.97678 0.94297 0.93772 0.90438 0.93289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.92 9.85 71.24 0.70 -1.22 16 2 C 0.23 4.60 6.86 42.87 0.29 4.89 16 3 N -0.53 -9.66 10.36 -187.21 -1.94 -11.60 16 4 C 0.34 5.26 12.27 180.86 2.22 7.48 16 5 N -0.56 -11.01 10.45 -312.04 -3.26 -14.27 16 6 C 0.40 8.69 7.85 85.18 0.67 9.35 16 7 O -0.48 -9.73 13.10 -85.68 -1.12 -10.85 16 8 C -0.27 -6.03 5.67 -19.82 -0.11 -6.15 16 9 C 0.59 16.01 5.48 86.70 0.47 16.48 16 10 O -0.57 -20.84 16.77 -3.99 -0.07 -20.90 16 11 N -0.69 -16.75 4.60 -444.64 -2.04 -18.79 16 12 C 0.15 4.72 2.01 45.22 0.09 4.81 16 13 H 0.06 2.41 7.58 -2.39 -0.02 2.39 16 14 C -0.11 -3.53 5.46 30.62 0.17 -3.36 16 15 C -0.13 -4.86 6.08 30.67 0.19 -4.68 16 16 C 0.18 8.14 5.28 86.36 0.46 8.59 16 17 N -0.60 -27.98 2.98 -674.42 -2.01 -29.99 16 18 C -0.25 -13.02 8.57 84.03 0.72 -12.30 16 19 H 0.07 3.69 6.24 -2.91 -0.02 3.67 16 20 C -0.05 -2.54 4.93 84.86 0.42 -2.12 16 21 N -0.93 -53.33 11.23 21.65 0.24 -53.09 16 22 Si 0.96 43.80 29.58 68.60 2.03 45.83 16 23 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 24 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 25 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 26 C 0.17 5.97 3.05 45.12 0.14 6.11 16 27 H 0.04 1.26 8.14 -2.38 -0.02 1.24 16 28 C -0.13 -4.19 7.84 71.98 0.56 -3.63 16 29 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.08 1.43 7.18 -2.39 -0.02 1.41 16 32 H 0.24 1.56 8.06 -2.91 -0.02 1.54 16 33 H 0.43 4.26 9.06 -74.06 -0.67 3.59 16 34 H 0.41 7.54 8.59 -92.70 -0.80 6.74 16 35 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 37 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 39 H 0.05 2.77 6.13 -2.38 -0.01 2.75 16 40 H 0.01 0.25 8.14 -2.38 -0.02 0.23 16 41 H 0.25 13.87 8.31 -92.70 -0.77 13.09 16 42 H 0.04 1.53 7.44 -2.39 -0.02 1.51 16 43 H 0.08 1.86 7.82 -2.38 -0.02 1.84 16 44 H 0.05 1.75 7.62 -2.39 -0.02 1.73 16 Total: -1.00 -71.71 360.76 -1.60 -73.31 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -0.42 Total: 16.08 kcal Atomic # 6 Polarization: 17.28 SS G_CDS: 6.99 Total: 24.26 kcal Atomic # 7 Polarization: -118.72 SS G_CDS: -9.01 Total: -127.73 kcal Atomic # 8 Polarization: -30.56 SS G_CDS: -1.19 Total: -31.75 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -71.71 -1.60 -73.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993722619.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.486 kcal (2) G-P(sol) polarization free energy of solvation -71.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds