Wall clock time and date at job start Tue Mar 31 2020 13:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.32220 * 120.51111 * 2 1 4 4 C 1.31906 * 121.14217 * 180.02562 * 3 2 1 5 5 N 1.31751 * 122.19835 * 359.97438 * 4 3 2 6 6 C 1.32744 * 120.86896 * 359.77168 * 5 4 3 7 7 O 1.35280 * 120.61509 * 180.24287 * 6 5 4 8 8 C 1.39769 * 120.51032 * 180.02562 * 2 1 3 9 9 C 1.47536 * 120.97978 * 359.95967 * 8 2 1 10 10 O 1.21589 * 119.99655 * 89.99916 * 9 8 2 11 11 N 1.34774 * 120.00011 * 270.00169 * 9 8 2 12 12 C 1.47484 * 127.03387 * 0.02562 * 11 9 8 13 13 C 1.54007 * 107.08285 * 154.50986 * 12 11 9 14 14 H 1.08993 * 110.32463 * 242.41201 * 13 12 11 15 15 N 1.46500 * 110.32427 * 120.20117 * 13 12 11 16 16 C 1.36930 * 120.00426 * 86.45147 * 15 13 12 17 17 H 1.08009 * 119.99883 * 0.02562 * 16 15 13 18 18 C 1.38813 * 120.00425 * 179.97438 * 16 15 13 19 19 N 1.31617 * 119.99564 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00276 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47196 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.47312 * 119.99674 * 20 18 16 23 23 H 1.48492 * 109.47331 * 240.00154 * 20 18 16 24 24 C 1.54611 * 105.04344 * 1.30849 * 13 12 11 25 25 C 1.52998 * 110.74013 * 140.18598 * 24 13 12 26 26 C 1.53002 * 110.73830 * 263.32628 * 24 13 12 27 27 C 1.48118 * 127.03156 * 179.97438 * 11 9 8 28 28 H 1.08993 * 109.47413 * 269.98065 * 1 2 3 29 29 H 1.09004 * 109.47130 * 29.97997 * 1 2 3 30 30 H 1.09003 * 109.47206 * 149.97236 * 1 2 3 31 31 H 1.08005 * 118.90044 * 180.02562 * 4 3 2 32 32 H 0.96706 * 113.99605 * 270.23949 * 7 6 5 33 33 H 1.09000 * 109.91322 * 35.14794 * 12 11 9 34 34 H 1.08997 * 109.91328 * 273.87427 * 12 11 9 35 35 H 0.97003 * 119.99805 * 266.45265 * 15 13 12 36 36 H 0.97003 * 119.99662 * 180.02562 * 19 18 16 37 37 H 1.09002 * 109.47598 * 59.99925 * 25 24 13 38 38 H 1.09000 * 109.47375 * 179.97438 * 25 24 13 39 39 H 1.09004 * 109.47203 * 299.99825 * 25 24 13 40 40 H 1.09005 * 109.46760 * 60.00772 * 26 24 13 41 41 H 1.08998 * 109.47298 * 179.97438 * 26 24 13 42 42 H 1.08990 * 109.47449 * 300.00356 * 26 24 13 43 43 H 1.08996 * 110.66106 * 100.89622 * 27 11 9 44 44 H 1.08999 * 110.80476 * 337.84373 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1782 1.1391 0.0000 4 6 3.4972 1.1536 -0.0005 5 7 4.2115 0.0466 -0.0005 6 6 3.6233 -1.1435 0.0045 7 8 4.3618 -2.2769 0.0094 8 6 2.2165 -1.2042 -0.0005 9 6 1.5123 -2.5006 -0.0002 10 8 1.2215 -3.0347 -1.0531 11 7 1.1914 -3.0929 1.1671 12 6 1.4664 -2.5870 2.5249 13 6 0.4105 -3.2050 3.4604 14 1 -0.2045 -2.4233 3.9059 15 7 1.0597 -4.0007 4.5052 16 6 1.4841 -3.3992 5.6597 17 1 1.3398 -2.3380 5.8004 18 6 2.0987 -4.1532 6.6500 19 7 2.2741 -5.4464 6.4788 20 14 2.6769 -3.3327 8.2253 21 1 2.3639 -1.8820 8.1716 22 1 1.9828 -3.9455 9.3863 23 1 4.1430 -3.5181 8.3708 24 6 -0.4497 -4.1123 2.5507 25 6 -0.8049 -5.4168 3.2669 26 6 -1.7162 -3.3822 2.0994 27 6 0.4893 -4.3844 1.3487 28 1 -0.3634 -0.0003 1.0276 29 1 -0.3633 0.8902 -0.5135 30 1 -0.3634 -0.8897 -0.5143 31 1 4.0087 2.1049 -0.0001 32 1 4.5796 -2.6082 -0.8727 33 1 1.3849 -1.5002 2.5398 34 1 2.4646 -2.8913 2.8393 35 1 1.1890 -4.9538 4.3790 36 1 2.7033 -5.9734 7.1709 37 1 -1.3675 -5.1923 4.1731 38 1 -1.4107 -6.0395 2.6085 39 1 0.1100 -5.9480 3.5295 40 1 -1.4404 -2.4863 1.5430 41 1 -2.3061 -4.0391 1.4602 42 1 -2.3042 -3.1008 2.9729 43 1 1.1983 -5.1774 1.5864 44 1 -0.0877 -4.6397 0.4599 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996178517.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:52 Heat of formation + Delta-G solvation = -3.420502 kcal Electronic energy + Delta-G solvation = -28304.118855 eV Core-core repulsion = 24450.773078 eV Total energy + Delta-G solvation = -3853.345777 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 320.164 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.57507 -39.87065 -38.07250 -37.82899 -34.42401 -34.10182 -33.24794 -32.00205 -30.85951 -28.99367 -27.84722 -26.95130 -26.57099 -24.76122 -23.86064 -23.02926 -21.78627 -19.80612 -19.10337 -18.75793 -18.25236 -17.40814 -17.04186 -16.39858 -15.94720 -15.41116 -15.22073 -14.68875 -14.43545 -14.17277 -13.90357 -13.66312 -13.46114 -13.36838 -13.07492 -12.91433 -12.68581 -12.55085 -12.26838 -12.08125 -11.82040 -11.73760 -11.47098 -11.40487 -10.99718 -10.95813 -10.65622 -10.56677 -10.53714 -10.23893 -9.99384 -9.86659 -9.70607 -9.61950 -9.56946 -9.05590 -8.47189 -7.11779 -5.88094 -3.18173 0.40449 0.68010 2.45512 3.00882 3.05659 3.37172 3.42873 3.43707 3.45301 3.73012 4.02299 4.35644 4.49773 4.72648 4.81048 4.95095 5.00945 5.08469 5.17507 5.29904 5.41439 5.42602 5.56289 5.57602 5.64725 5.71413 5.80289 5.89464 5.96971 6.02545 6.08423 6.21820 6.23568 6.28967 6.36131 6.41290 6.54782 6.59422 6.77407 6.89176 7.11616 7.60848 7.65423 7.75592 8.10097 8.30270 9.42438 9.95988 10.30809 11.34021 Molecular weight = 320.16amu Principal moments of inertia in cm(-1) A = 0.012074 B = 0.004652 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.528099 B = 6016.864275 C = 7119.206352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.226 3.774 3 N -0.526 5.526 4 C 0.332 3.668 5 N -0.541 5.541 6 C 0.400 3.600 7 O -0.465 6.465 8 C -0.238 4.238 9 C 0.593 3.407 10 O -0.545 6.545 11 N -0.595 5.595 12 C 0.075 3.925 13 C 0.178 3.822 14 H 0.066 0.934 15 N -0.713 5.713 16 C -0.247 4.247 17 H 0.071 0.929 18 C -0.007 4.007 19 N -0.928 5.928 20 Si 0.906 3.094 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C -0.088 4.088 25 C -0.125 4.125 26 C -0.129 4.129 27 C 0.117 3.883 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.206 0.794 32 H 0.412 0.588 33 H 0.054 0.946 34 H 0.081 0.919 35 H 0.389 0.611 36 H 0.256 0.744 37 H 0.065 0.935 38 H 0.045 0.955 39 H 0.067 0.933 40 H 0.050 0.950 41 H 0.053 0.947 42 H 0.059 0.941 43 H 0.076 0.924 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.959 8.356 -14.186 16.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.080 3.920 3 N -0.242 5.242 4 C 0.045 3.955 5 N -0.266 5.266 6 C 0.212 3.788 7 O -0.273 6.273 8 C -0.247 4.247 9 C 0.379 3.621 10 O -0.424 6.424 11 N -0.326 5.326 12 C -0.051 4.051 13 C 0.065 3.935 14 H 0.084 0.916 15 N -0.355 5.355 16 C -0.378 4.378 17 H 0.089 0.911 18 C -0.203 4.203 19 N -0.576 5.576 20 Si 0.737 3.263 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.218 1.218 24 C -0.090 4.090 25 C -0.183 4.183 26 C -0.187 4.187 27 C -0.004 4.004 28 H 0.113 0.887 29 H 0.110 0.890 30 H 0.103 0.897 31 H 0.222 0.778 32 H 0.273 0.727 33 H 0.072 0.928 34 H 0.099 0.901 35 H 0.226 0.774 36 H 0.066 0.934 37 H 0.084 0.916 38 H 0.064 0.936 39 H 0.086 0.914 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.095 0.905 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -3.581 9.018 -14.042 17.068 hybrid contribution 0.536 -0.646 0.535 0.996 sum -3.045 8.371 -13.507 16.180 Atomic orbital electron populations 1.20930 0.87002 1.04718 1.04520 1.21778 0.97747 0.85978 0.86534 1.68286 1.10207 1.29333 1.16414 1.24945 0.86266 0.96116 0.88176 1.68050 1.42624 0.98678 1.17279 1.19385 0.85532 0.85979 0.87911 1.84693 1.72437 1.35869 1.34334 1.21734 0.95053 0.96881 1.11048 1.17074 0.78739 0.83316 0.82991 1.90799 1.55726 1.65320 1.30537 1.48730 1.55931 1.22181 1.05772 1.23550 1.02937 0.98145 0.80487 1.21065 0.90923 0.93219 0.88247 0.91631 1.42628 1.69500 1.08156 1.15245 1.19262 1.31845 0.93119 0.93607 0.91110 1.24731 1.01289 0.95603 0.98713 1.69657 1.48396 1.04937 1.34593 0.86150 0.78220 0.78430 0.83549 1.20532 1.21762 1.21800 1.21928 0.94795 0.97343 0.94894 1.21596 1.02006 0.94950 0.99745 1.21717 0.96286 0.99749 1.00944 1.22611 0.94537 0.85064 0.98238 0.88679 0.89033 0.89688 0.77795 0.72729 0.92760 0.90113 0.77400 0.93389 0.91607 0.93618 0.91369 0.93113 0.92775 0.92183 0.90539 0.90217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.18 9.85 36.00 0.35 -0.83 16 2 C 0.23 2.91 6.86 -81.86 -0.56 2.35 16 3 N -0.53 -6.49 10.36 -10.52 -0.11 -6.60 16 4 C 0.33 3.78 12.27 -92.09 -1.13 2.65 16 5 N -0.54 -7.31 10.45 -14.32 -0.15 -7.46 16 6 C 0.40 5.75 7.85 -16.19 -0.13 5.63 16 7 O -0.47 -6.35 13.10 -17.53 -0.23 -6.58 16 8 C -0.24 -3.45 4.67 -104.56 -0.49 -3.94 16 9 C 0.59 9.40 5.58 -12.47 -0.07 9.33 16 10 O -0.54 -9.74 17.32 5.29 0.09 -9.65 16 11 N -0.60 -9.39 3.20 -170.99 -0.55 -9.94 16 12 C 0.07 1.29 6.54 -2.98 -0.02 1.27 16 13 C 0.18 3.19 3.10 -66.56 -0.21 2.99 16 14 H 0.07 1.19 7.83 -51.93 -0.41 0.78 16 15 N -0.71 -16.20 4.51 -52.10 -0.24 -16.43 16 16 C -0.25 -6.41 9.97 -15.06 -0.15 -6.56 16 17 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 18 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 19 N -0.93 -26.67 13.06 55.49 0.72 -25.95 16 20 Si 0.91 21.65 29.55 -169.99 -5.02 16.63 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 C -0.09 -1.31 0.93 -152.64 -0.14 -1.45 16 25 C -0.13 -1.92 7.82 37.16 0.29 -1.63 16 26 C -0.13 -1.61 8.49 37.16 0.32 -1.30 16 27 C 0.12 1.78 5.98 -2.13 -0.01 1.77 16 28 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.08 0.92 7.18 -51.93 -0.37 0.55 16 31 H 0.21 1.47 8.06 -52.48 -0.42 1.05 16 32 H 0.41 3.57 9.06 45.56 0.41 3.98 16 33 H 0.05 0.89 7.71 -51.93 -0.40 0.49 16 34 H 0.08 1.65 7.92 -51.93 -0.41 1.24 16 35 H 0.39 9.37 5.51 -40.82 -0.23 9.14 16 36 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.07 1.19 6.23 -51.93 -0.32 0.87 16 40 H 0.05 0.61 8.08 -51.93 -0.42 0.19 16 41 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.08 1.23 8.02 -51.93 -0.42 0.81 16 44 H 0.08 1.15 7.77 -51.93 -0.40 0.74 16 LS Contribution 366.64 15.07 5.53 5.53 Total: -1.00 -32.12 366.64 -7.47 -39.58 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: -5.47 Total: 10.86 kcal Atomic # 6 Polarization: 12.04 SS G_CDS: -2.04 Total: 10.00 kcal Atomic # 7 Polarization: -66.06 SS G_CDS: -0.32 Total: -66.38 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: -0.14 Total: -16.22 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.12 -7.47 -39.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996178517.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.164 kcal (2) G-P(sol) polarization free energy of solvation -32.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds